Chlorine in PDB 4lk6: Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution
Protein crystallography data
The structure of Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution, PDB code: 4lk6
was solved by
R.U.Kadam,
A.Stocker,
J.L.Reymond,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.92 /
2.86
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
89.068,
150.829,
185.817,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
23.5 /
27.1
|
Other elements in 4lk6:
The structure of Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution also contains other interesting chemical elements:
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Chlorine atom in the Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution
(pdb code 4lk6). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 24 binding sites of Chlorine where determined in the
Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution, PDB code: 4lk6:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 24 in 4lk6
Go back to
Chlorine Binding Sites List in 4lk6
Chlorine binding site 1 out
of 24 in the Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl902
b:61.6
occ:1.00
|
CLB
|
A:LRD902
|
0.0
|
61.6
|
1.0
|
CBG
|
A:LRD902
|
1.7
|
62.5
|
1.0
|
CBF
|
A:LRD902
|
2.7
|
61.7
|
1.0
|
CBB
|
A:LRD902
|
2.7
|
63.8
|
1.0
|
OBH
|
A:LRD902
|
3.0
|
63.2
|
1.0
|
CBC
|
A:LRD902
|
4.0
|
61.8
|
1.0
|
CBE
|
A:LRD902
|
4.0
|
61.6
|
1.0
|
O
|
A:HOH1018
|
4.4
|
72.0
|
1.0
|
CBD
|
A:LRD902
|
4.5
|
61.6
|
1.0
|
|
Chlorine binding site 2 out
of 24 in 4lk6
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Chlorine Binding Sites List in 4lk6
Chlorine binding site 2 out
of 24 in the Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl902
b:42.7
occ:1.00
|
CLA
|
A:LRD902
|
0.0
|
42.7
|
1.0
|
CAO
|
A:LRD902
|
1.7
|
52.6
|
1.0
|
CAP
|
A:LRD902
|
2.7
|
51.6
|
1.0
|
CAN
|
A:LRD902
|
2.7
|
60.8
|
1.0
|
O1
|
A:LRD902
|
3.0
|
53.9
|
1.0
|
CG
|
A:PRO38
|
3.3
|
42.3
|
1.0
|
CE2
|
A:TYR36
|
4.0
|
43.1
|
1.0
|
CAM
|
A:LRD902
|
4.0
|
60.3
|
1.0
|
CAQ
|
A:LRD902
|
4.0
|
54.4
|
1.0
|
CD
|
A:PRO38
|
4.0
|
44.9
|
1.0
|
C1
|
A:GAL903
|
4.2
|
55.7
|
1.0
|
CB
|
A:PRO38
|
4.3
|
41.7
|
1.0
|
O2
|
A:GAL903
|
4.4
|
58.4
|
1.0
|
CAR
|
A:LRD902
|
4.6
|
56.8
|
1.0
|
OH
|
A:TYR36
|
4.6
|
36.9
|
1.0
|
C2
|
A:GAL903
|
4.6
|
51.2
|
1.0
|
CE1
|
A:HIS50
|
4.7
|
46.4
|
1.0
|
CZ
|
A:TYR36
|
4.8
|
42.2
|
1.0
|
N
|
A:PRO38
|
4.8
|
44.0
|
1.0
|
CD2
|
A:TYR36
|
4.8
|
42.8
|
1.0
|
CA
|
A:PRO38
|
4.9
|
43.5
|
1.0
|
|
Chlorine binding site 3 out
of 24 in 4lk6
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Chlorine Binding Sites List in 4lk6
Chlorine binding site 3 out
of 24 in the Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl902
b:98.0
occ:1.00
|
CLB
|
B:LRD902
|
0.0
|
98.0
|
1.0
|
CBG
|
B:LRD902
|
1.7
|
92.9
|
1.0
|
CBB
|
B:LRD902
|
2.7
|
94.4
|
1.0
|
CBF
|
B:LRD902
|
2.7
|
82.5
|
1.0
|
OBH
|
B:LRD902
|
3.0
|
88.9
|
1.0
|
NE2
|
B:GLN53
|
3.9
|
68.9
|
1.0
|
CBC
|
B:LRD902
|
4.0
|
87.0
|
1.0
|
CBE
|
B:LRD902
|
4.0
|
78.0
|
1.0
|
CBD
|
B:LRD902
|
4.5
|
78.7
|
1.0
|
CAR
|
B:LRD902
|
4.7
|
67.6
|
1.0
|
CD
|
B:GLN53
|
4.9
|
66.8
|
1.0
|
|
Chlorine binding site 4 out
of 24 in 4lk6
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Chlorine Binding Sites List in 4lk6
Chlorine binding site 4 out
of 24 in the Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl902
b:62.9
occ:1.00
|
CLA
|
B:LRD902
|
0.0
|
62.9
|
1.0
|
CAO
|
B:LRD902
|
1.7
|
62.7
|
1.0
|
CAP
|
B:LRD902
|
2.7
|
60.4
|
1.0
|
CAN
|
B:LRD902
|
2.7
|
66.7
|
1.0
|
O1
|
B:LRD902
|
3.0
|
58.5
|
1.0
|
CG
|
B:PRO38
|
3.2
|
51.3
|
1.0
|
CE2
|
B:TYR36
|
3.9
|
53.5
|
1.0
|
OH
|
B:TYR36
|
4.0
|
46.3
|
1.0
|
CAQ
|
B:LRD902
|
4.0
|
63.4
|
1.0
|
CAM
|
B:LRD902
|
4.0
|
68.9
|
1.0
|
CD
|
B:PRO38
|
4.0
|
48.9
|
1.0
|
CE1
|
B:HIS50
|
4.3
|
57.2
|
1.0
|
C1
|
B:GAL903
|
4.3
|
62.1
|
1.0
|
CZ
|
B:TYR36
|
4.4
|
51.9
|
1.0
|
CB
|
B:PRO38
|
4.4
|
48.9
|
1.0
|
CAR
|
B:LRD902
|
4.5
|
67.6
|
1.0
|
ND1
|
B:HIS50
|
4.6
|
56.6
|
1.0
|
O2
|
B:GAL903
|
4.8
|
64.1
|
1.0
|
CD2
|
B:TYR36
|
4.9
|
53.9
|
1.0
|
C2
|
B:GAL903
|
5.0
|
60.3
|
1.0
|
|
Chlorine binding site 5 out
of 24 in 4lk6
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Chlorine Binding Sites List in 4lk6
Chlorine binding site 5 out
of 24 in the Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl902
b:53.5
occ:1.00
|
CLB
|
C:LRD902
|
0.0
|
53.5
|
1.0
|
CBG
|
C:LRD902
|
1.7
|
52.4
|
1.0
|
CBB
|
C:LRD902
|
2.7
|
53.4
|
1.0
|
CBF
|
C:LRD902
|
2.7
|
51.0
|
1.0
|
OBH
|
C:LRD902
|
3.0
|
56.3
|
1.0
|
CAU
|
D:LRD902
|
4.0
|
48.7
|
1.0
|
CBC
|
C:LRD902
|
4.0
|
51.5
|
1.0
|
CBE
|
C:LRD902
|
4.0
|
51.9
|
1.0
|
CBD
|
C:LRD902
|
4.5
|
51.5
|
1.0
|
CAZ
|
D:LRD902
|
4.6
|
52.4
|
1.0
|
CAV
|
D:LRD902
|
4.9
|
50.1
|
1.0
|
|
Chlorine binding site 6 out
of 24 in 4lk6
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Chlorine Binding Sites List in 4lk6
Chlorine binding site 6 out
of 24 in the Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl902
b:60.1
occ:1.00
|
CLA
|
C:LRD902
|
0.0
|
60.1
|
1.0
|
CAO
|
C:LRD902
|
1.7
|
48.6
|
1.0
|
CAP
|
C:LRD902
|
2.7
|
44.7
|
1.0
|
CAN
|
C:LRD902
|
2.7
|
51.9
|
1.0
|
O1
|
C:LRD902
|
3.0
|
47.6
|
1.0
|
CG
|
C:PRO38
|
3.9
|
53.1
|
1.0
|
CAQ
|
C:LRD902
|
4.0
|
45.7
|
1.0
|
CAM
|
C:LRD902
|
4.0
|
51.2
|
1.0
|
O
|
C:HOH1011
|
4.1
|
49.5
|
1.0
|
C1
|
C:GAL903
|
4.2
|
46.9
|
1.0
|
CD
|
C:PRO38
|
4.4
|
51.1
|
1.0
|
O2
|
C:GAL903
|
4.5
|
46.4
|
1.0
|
CAR
|
C:LRD902
|
4.5
|
49.0
|
1.0
|
O
|
C:HOH1012
|
4.6
|
44.5
|
1.0
|
CB
|
C:PRO38
|
4.8
|
54.0
|
1.0
|
C2
|
C:GAL903
|
4.9
|
45.6
|
1.0
|
N
|
C:PRO38
|
5.0
|
48.6
|
1.0
|
|
Chlorine binding site 7 out
of 24 in 4lk6
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Chlorine Binding Sites List in 4lk6
Chlorine binding site 7 out
of 24 in the Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl902
b:64.3
occ:1.00
|
CLB
|
D:LRD902
|
0.0
|
64.3
|
1.0
|
CBG
|
D:LRD902
|
1.7
|
54.6
|
1.0
|
CBB
|
D:LRD902
|
2.7
|
57.3
|
1.0
|
CBF
|
D:LRD902
|
2.7
|
50.0
|
1.0
|
OBH
|
D:LRD902
|
3.0
|
60.7
|
1.0
|
O
|
C:GLU49
|
3.8
|
50.6
|
1.0
|
CBC
|
D:LRD902
|
4.0
|
53.0
|
1.0
|
CBE
|
D:LRD902
|
4.0
|
52.5
|
1.0
|
OBK
|
C:LRD902
|
4.1
|
54.6
|
1.0
|
CD
|
C:PRO51
|
4.3
|
52.7
|
1.0
|
CBD
|
D:LRD902
|
4.5
|
53.9
|
1.0
|
CG
|
C:PRO51
|
4.6
|
51.0
|
1.0
|
OBL
|
C:LRD902
|
4.7
|
49.1
|
1.0
|
CB
|
C:PRO51
|
4.8
|
47.7
|
1.0
|
C
|
C:GLU49
|
4.9
|
49.5
|
1.0
|
N
|
C:PRO51
|
5.0
|
52.2
|
1.0
|
|
Chlorine binding site 8 out
of 24 in 4lk6
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Chlorine Binding Sites List in 4lk6
Chlorine binding site 8 out
of 24 in the Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl902
b:51.9
occ:1.00
|
CLA
|
D:LRD902
|
0.0
|
51.9
|
1.0
|
CAO
|
D:LRD902
|
1.7
|
45.7
|
1.0
|
CAP
|
D:LRD902
|
2.7
|
42.7
|
1.0
|
CAN
|
D:LRD902
|
2.7
|
49.2
|
1.0
|
O1
|
D:LRD902
|
3.0
|
43.7
|
1.0
|
O
|
D:HOH1019
|
3.3
|
47.0
|
1.0
|
CG
|
D:PRO38
|
3.4
|
42.5
|
1.0
|
CD
|
D:PRO38
|
3.9
|
42.1
|
1.0
|
CAQ
|
D:LRD902
|
4.0
|
45.5
|
1.0
|
CAM
|
D:LRD902
|
4.0
|
49.8
|
1.0
|
CB
|
D:PRO38
|
4.1
|
42.7
|
1.0
|
N
|
D:PRO38
|
4.2
|
42.4
|
1.0
|
CA
|
D:PRO38
|
4.2
|
42.3
|
1.0
|
C1
|
D:GAL903
|
4.3
|
44.8
|
1.0
|
CAR
|
D:LRD902
|
4.5
|
47.8
|
1.0
|
O2
|
D:GAL903
|
4.7
|
45.4
|
1.0
|
C2
|
D:GAL903
|
4.9
|
45.0
|
1.0
|
C
|
D:GLY37
|
4.9
|
43.7
|
1.0
|
CE2
|
D:TYR36
|
5.0
|
39.4
|
1.0
|
|
Chlorine binding site 9 out
of 24 in 4lk6
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Chlorine Binding Sites List in 4lk6
Chlorine binding site 9 out
of 24 in the Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl902
b:72.0
occ:1.00
|
CLB
|
E:LRD902
|
0.0
|
72.0
|
1.0
|
CBG
|
E:LRD902
|
1.7
|
56.3
|
1.0
|
CBB
|
E:LRD902
|
2.7
|
53.1
|
1.0
|
CBF
|
E:LRD902
|
2.7
|
52.4
|
1.0
|
OBH
|
E:LRD902
|
3.0
|
59.3
|
1.0
|
O
|
E:HOH1001
|
3.1
|
48.9
|
1.0
|
CBC
|
E:LRD902
|
4.0
|
51.7
|
1.0
|
CBE
|
E:LRD902
|
4.0
|
55.2
|
1.0
|
CBD
|
E:LRD902
|
4.5
|
56.7
|
1.0
|
|
Chlorine binding site 10 out
of 24 in 4lk6
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Chlorine Binding Sites List in 4lk6
Chlorine binding site 10 out
of 24 in the Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of Pseudomonas Aeruginosa Lectin Leca Complexed with Chlorophenol Red-B-D-Galactopyranoside at 2.86 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl902
b:60.6
occ:1.00
|
CLA
|
E:LRD902
|
0.0
|
60.6
|
1.0
|
CAO
|
E:LRD902
|
1.7
|
52.6
|
1.0
|
CAP
|
E:LRD902
|
2.7
|
50.4
|
1.0
|
CAN
|
E:LRD902
|
2.7
|
50.8
|
1.0
|
O
|
E:HOH1030
|
2.9
|
50.4
|
1.0
|
O1
|
E:LRD902
|
3.0
|
52.8
|
1.0
|
CE1
|
E:HIS50
|
3.2
|
51.8
|
1.0
|
ND1
|
E:HIS50
|
3.3
|
52.0
|
1.0
|
O
|
E:HOH1029
|
3.4
|
45.9
|
1.0
|
OH
|
E:TYR36
|
3.7
|
48.6
|
1.0
|
CE2
|
E:TYR36
|
3.7
|
49.0
|
1.0
|
CAQ
|
E:LRD902
|
4.0
|
50.3
|
1.0
|
CAM
|
E:LRD902
|
4.0
|
49.6
|
1.0
|
CG
|
E:PRO38
|
4.1
|
50.0
|
1.0
|
CZ
|
E:TYR36
|
4.2
|
48.6
|
1.0
|
C1
|
E:GAL903
|
4.3
|
52.2
|
1.0
|
NE2
|
E:HIS50
|
4.3
|
51.5
|
1.0
|
CG
|
E:HIS50
|
4.4
|
50.4
|
1.0
|
CAR
|
E:LRD902
|
4.5
|
50.2
|
1.0
|
OBK
|
E:LRD902
|
4.6
|
50.6
|
1.0
|
CD2
|
E:TYR36
|
4.8
|
47.9
|
1.0
|
O5
|
E:GAL903
|
4.8
|
51.6
|
1.0
|
CD
|
E:PRO38
|
4.9
|
47.4
|
1.0
|
CD2
|
E:HIS50
|
5.0
|
52.0
|
1.0
|
|
Reference:
R.U.Kadam,
D.Garg,
J.Schwartz,
R.Visini,
M.Sattler,
A.Stocker,
T.Darbre,
J.L.Reymond.
Ch-Pi "T-Shape" Interaction with Histidine Explains Binding of Aromatic Galactosides to Pseudomonas Aeruginosa Lectin Leca Acs Chem.Biol. V. 8 1925 2013.
ISSN: ISSN 1554-8929
PubMed: 23869965
DOI: 10.1021/CB400303W
Page generated: Sun Jul 21 18:59:24 2024
|