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Chlorine in PDB 4ln5: Crystal Structure of A Trap Periplasmic Solute Binding Protein From Burkholderia Ambifaria (BAMB_6123), Target Efi-510059, with Bound Glycerol and Chloride Ion

Protein crystallography data

The structure of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Burkholderia Ambifaria (BAMB_6123), Target Efi-510059, with Bound Glycerol and Chloride Ion, PDB code: 4ln5 was solved by M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, M.Stead, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.67 / 2.10
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 96.098, 97.340, 58.115, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 22

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Burkholderia Ambifaria (BAMB_6123), Target Efi-510059, with Bound Glycerol and Chloride Ion (pdb code 4ln5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Burkholderia Ambifaria (BAMB_6123), Target Efi-510059, with Bound Glycerol and Chloride Ion, PDB code: 4ln5:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4ln5

Go back to Chlorine Binding Sites List in 4ln5
Chlorine binding site 1 out of 2 in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Burkholderia Ambifaria (BAMB_6123), Target Efi-510059, with Bound Glycerol and Chloride Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Burkholderia Ambifaria (BAMB_6123), Target Efi-510059, with Bound Glycerol and Chloride Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:21.3
occ:1.00
O A:HOH559 3.0 27.2 1.0
O A:HOH504 3.1 14.3 1.0
N A:PHE192 3.1 19.2 1.0
N A:GLU73 3.2 23.3 1.0
O A:HOH612 3.5 22.3 1.0
CG A:GLU73 3.5 18.7 1.0
CB A:PHE192 3.7 13.0 1.0
CB A:SER72 3.7 14.4 1.0
CA A:PRO191 3.8 21.5 1.0
CA A:SER72 3.8 17.6 1.0
C A:PRO191 3.9 17.9 1.0
CB A:GLU73 4.0 17.6 1.0
C A:SER72 4.0 16.8 1.0
CA A:PHE192 4.0 14.8 1.0
CB A:PRO191 4.1 23.9 1.0
CG1 A:VAL34 4.1 11.3 1.0
CA A:GLU73 4.2 19.0 1.0
OG A:SER72 4.7 24.2 1.0
CD A:GLU73 4.7 20.9 1.0
O A:HOH594 4.7 20.0 1.0
N A:ALA193 4.9 22.9 1.0
O A:HOH574 5.0 24.9 1.0

Chlorine binding site 2 out of 2 in 4ln5

Go back to Chlorine Binding Sites List in 4ln5
Chlorine binding site 2 out of 2 in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Burkholderia Ambifaria (BAMB_6123), Target Efi-510059, with Bound Glycerol and Chloride Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Burkholderia Ambifaria (BAMB_6123), Target Efi-510059, with Bound Glycerol and Chloride Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:29.6
occ:1.00
NH1 A:ARG169 3.2 16.4 1.0
ND2 A:ASN209 3.4 12.3 1.0
NH2 A:ARG149 3.5 16.1 1.0
CD1 A:PHE192 3.5 30.8 1.0
NH2 A:ARG169 3.6 14.7 1.0
CG A:GLN171 3.6 15.2 1.0
C3 A:GOL403 3.7 18.7 1.0
NE2 A:GLN171 3.7 13.1 1.0
CD A:GLN171 3.8 18.2 1.0
CZ A:ARG169 3.8 15.8 1.0
NH1 A:ARG149 3.9 17.4 1.0
CZ A:ARG149 4.2 26.2 1.0
CE1 A:PHE192 4.2 32.9 1.0
C1 A:GOL403 4.2 25.9 1.0
CG A:PHE192 4.5 23.4 1.0
O A:HOH524 4.5 16.7 1.0
C2 A:GOL403 4.5 23.1 1.0
O A:HOH559 4.5 27.2 1.0
CG A:ASN209 4.6 15.4 1.0
CB A:PHE192 4.6 13.0 1.0
OE1 A:GLN171 4.6 17.4 1.0
O3 A:GOL403 4.6 24.9 1.0
OD1 A:ASN209 5.0 12.4 1.0

Reference:

M.W.Vetting, R.Toro, R.Bhosle, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Sojitra, M.Stead, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of A Trap Periplasmic Solute Binding Protein From Burkholderia Ambifaria (BAMB_6123), Target Efi-510059, with Bound Glycerol and Chloride Ion To Be Published.
Page generated: Sat Dec 12 10:53:13 2020

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