Chlorine in PDB 4lq4: Crystal Structure of Mutant Ribosomal Protein L1 From Methanococcus Jannaschii with Deletion of 8 Residues From C-Terminus

The structure of Crystal Structure of Mutant Ribosomal Protein L1 From Methanococcus Jannaschii with Deletion of 8 Residues From C-Terminus, PDB code: 4lq4 was solved by A.G.Gabdulkhakov, S.V.Tishchenko, A.A.Shkliaeva, M.B.Garber, S.V.Nikonov, A.V.Sarskikh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.86 / 1.75
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	33.868, 105.255, 38.526, 90.00, 104.01, 90.00
R / Rfree (%)	16.4 / 22

The binding sites of Chlorine atom in the Crystal Structure of Mutant Ribosomal Protein L1 From Methanococcus Jannaschii with Deletion of 8 Residues From C-Terminus (pdb code 4lq4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Mutant Ribosomal Protein L1 From Methanococcus Jannaschii with Deletion of 8 Residues From C-Terminus, PDB code: 4lq4:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Crystal Structure of Mutant Ribosomal Protein L1 From Methanococcus Jannaschii with Deletion of 8 Residues From C-Terminus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Mutant Ribosomal Protein L1 From Methanococcus Jannaschii with Deletion of 8 Residues From C-Terminus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:48.9 occ:1.00 N A:VAL49 2.8 13.4 1.0 O A:HOH570 3.1 31.5 1.0 CA A:VAL48 3.6 16.3 0.5 CA A:VAL48 3.6 16.0 0.5 C A:VAL48 3.7 13.7 1.0 CB A:VAL49 3.7 14.4 1.0 CA A:VAL49 3.8 11.1 1.0 O A:HOH586 3.8 31.8 1.0 CG2 A:VAL49 3.9 14.6 1.0 CG2 A:VAL48 4.0 19.7 0.5 O A:VAL49 4.2 12.5 1.0 O A:GLU47 4.2 17.0 1.0 CG1 A:VAL48 4.2 18.3 0.5 CB A:VAL48 4.3 17.5 0.5 O A:HOH540 4.4 26.6 1.0 C A:VAL49 4.5 10.3 1.0 CB A:VAL48 4.5 16.6 0.5 N A:VAL48 4.7 16.1 1.0 C A:GLU47 4.8 18.1 1.0 O A:VAL48 4.9 12.4 1.0

Chlorine binding site 2 out of 3 in the Crystal Structure of Mutant Ribosomal Protein L1 From Methanococcus Jannaschii with Deletion of 8 Residues From C-Terminus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Mutant Ribosomal Protein L1 From Methanococcus Jannaschii with Deletion of 8 Residues From C-Terminus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl304 b:44.7 occ:1.00 NZ A:LYS128 3.0 16.8 1.0 CD A:ARG126 3.5 21.8 1.0 CE A:LYS128 3.6 16.6 1.0 O A:HOH516 3.6 27.1 1.0 CG A:ARG126 3.8 19.5 1.0 O A:ALA99 3.8 16.1 1.0 CB A:ARG126 3.8 19.6 1.0 CA A:LYS100 3.9 17.1 1.0 C A:ALA99 3.9 14.1 1.0 CD A:LYS128 3.9 16.3 1.0 N A:LYS100 4.0 15.5 1.0 NE A:ARG126 4.2 23.1 1.0 CB A:ALA99 4.4 11.8 1.0 CB A:LYS100 4.6 18.0 1.0 CA A:ALA99 4.8 13.3 1.0 C A:LYS100 5.0 16.5 1.0

Chlorine binding site 3 out of 3 in the Crystal Structure of Mutant Ribosomal Protein L1 From Methanococcus Jannaschii with Deletion of 8 Residues From C-Terminus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Mutant Ribosomal Protein L1 From Methanococcus Jannaschii with Deletion of 8 Residues From C-Terminus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl305 b:43.9 occ:1.00 O A:HOH536 2.7 24.8 1.0 O A:HOH584 3.1 26.5 1.0 O A:HOH451 3.1 19.5 1.0 N A:GLU172 3.1 14.1 1.0 N A:ASP171 3.2 12.1 1.0 CG A:GLU172 3.4 21.5 1.0 CB A:THR170 3.5 13.2 1.0 CB A:ASP171 3.6 13.8 1.0 CA A:ASP171 3.7 10.7 1.0 CB A:GLU172 3.8 16.6 1.0 OG1 A:THR170 3.9 14.8 1.0 C A:ASP171 3.9 12.4 1.0 C A:THR170 4.0 13.5 1.0 O A:HOH553 4.0 37.7 1.0 CA A:GLU172 4.0 13.8 1.0 CA A:THR170 4.2 11.5 1.0 CG A:ASP171 4.5 15.1 1.0 CD A:GLU172 4.5 27.1 1.0 O A:HOH510 4.5 27.5 1.0 OE2 A:GLU172 4.6 32.6 1.0 CG2 A:THR170 4.6 16.1 1.0 O A:HOH607 4.6 28.7 1.0 O A:HOH448 4.9 23.4 1.0 O A:THR170 4.9 12.5 1.0

A.V.Sarskikh, A.G.Gabdulkhakov, O.S.Kostareva, A.A.Shkliaeva, S.V.Tishchenko. Crystal Structure of A Mutant of Archaeal Ribosomal Protein L1 From Methanococcus Jannaschii Crystallography Reports V. 59 394 2014.
ISSN: ISSN 1063-7745
DOI: 10.1134/S1063774514030158