Atomistry » Chlorine » PDB 4lhj-4lqm » 4lq6
Atomistry »
  Chlorine »
    PDB 4lhj-4lqm »
      4lq6 »

Chlorine in PDB 4lq6: Crystal Structure of RV3717 Reveals A Novel Amidase From M. Tuberculosis

Protein crystallography data

The structure of Crystal Structure of RV3717 Reveals A Novel Amidase From M. Tuberculosis, PDB code: 4lq6 was solved by A.Kumar, S.Kumar, D.Kumar, A.Mishra, R.P.Dewangan, P.Shrivastava, S.Ramachandran, B.Taneja, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.09 / 1.68
Space group I 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.350, 103.780, 129.970, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 18.4

Other elements in 4lq6:

The structure of Crystal Structure of RV3717 Reveals A Novel Amidase From M. Tuberculosis also contains other interesting chemical elements:

Platinum (Pt) 9 atoms
Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of RV3717 Reveals A Novel Amidase From M. Tuberculosis (pdb code 4lq6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of RV3717 Reveals A Novel Amidase From M. Tuberculosis, PDB code: 4lq6:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4lq6

Go back to Chlorine Binding Sites List in 4lq6
Chlorine binding site 1 out of 4 in the Crystal Structure of RV3717 Reveals A Novel Amidase From M. Tuberculosis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of RV3717 Reveals A Novel Amidase From M. Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:74.5
occ:1.00
NH1 A:ARG137 3.2 26.2 1.0
NH2 A:ARG137 3.8 29.9 1.0
O A:HOH493 4.0 53.1 1.0
CZ A:ARG137 4.0 39.1 1.0
O A:HOH543 4.0 47.3 1.0
CD1 A:LEU156 4.1 22.0 1.0
NE A:ARG134 4.6 40.6 1.0
O A:HOH491 4.8 51.2 1.0
CD A:ARG134 5.0 26.9 1.0

Chlorine binding site 2 out of 4 in 4lq6

Go back to Chlorine Binding Sites List in 4lq6
Chlorine binding site 2 out of 4 in the Crystal Structure of RV3717 Reveals A Novel Amidase From M. Tuberculosis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of RV3717 Reveals A Novel Amidase From M. Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:52.4
occ:1.00
N A:ALA123 3.2 19.2 1.0
O A:HOH467 3.4 32.2 1.0
CB A:ASN122 3.8 20.2 1.0
CB A:ALA123 3.8 21.1 1.0
CA A:ASN122 3.8 17.9 1.0
C A:ASN122 4.0 21.0 1.0
CA A:ALA123 4.1 19.3 1.0
O A:HOH481 4.7 48.1 1.0
CG A:ASN122 5.0 20.2 1.0

Chlorine binding site 3 out of 4 in 4lq6

Go back to Chlorine Binding Sites List in 4lq6
Chlorine binding site 3 out of 4 in the Crystal Structure of RV3717 Reveals A Novel Amidase From M. Tuberculosis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of RV3717 Reveals A Novel Amidase From M. Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:48.0
occ:1.00
PT A:PT309 2.3 50.5 0.2
O A:HOH420 2.4 25.6 1.0
CL A:CL306 2.7 34.5 1.0
O A:HOH458 2.7 28.7 1.0
N A:GLY164 3.0 16.4 1.0
N A:ALA163 3.5 14.5 1.0
CA A:GLY164 3.7 16.4 1.0
C A:LEU162 3.9 16.3 1.0
CB A:LEU162 3.9 13.4 1.0
C A:ALA163 4.0 17.6 1.0
CB A:VAL82 4.1 17.4 1.0
CA A:LEU162 4.1 13.2 1.0
CG1 A:VAL82 4.1 18.8 1.0
CA A:ALA163 4.1 15.0 1.0
O A:HOH453 4.2 23.7 1.0
CB A:ALA163 4.4 16.9 1.0
O A:HOH492 4.6 31.9 1.0
O A:LEU162 4.6 14.9 1.0
O A:HOH438 4.7 46.1 1.0
CG2 A:VAL82 4.7 16.8 1.0
O A:HOH487 4.7 42.0 1.0
N A:LEU165 4.7 14.1 1.0
CD1 A:LEU174 4.7 17.3 1.0
O A:HOH524 4.7 54.8 1.0
C A:GLY164 4.8 19.5 1.0
CD2 A:LEU162 4.8 20.5 1.0
CG A:LEU162 4.8 17.2 1.0
O A:HOH417 5.0 20.9 1.0

Chlorine binding site 4 out of 4 in 4lq6

Go back to Chlorine Binding Sites List in 4lq6
Chlorine binding site 4 out of 4 in the Crystal Structure of RV3717 Reveals A Novel Amidase From M. Tuberculosis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of RV3717 Reveals A Novel Amidase From M. Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:34.5
occ:1.00
PT A:PT309 2.0 50.5 0.2
CL A:CL305 2.7 48.0 1.0
NZ A:LYS31 3.0 38.2 1.0
N A:ALA163 3.2 14.5 1.0
CE A:LYS31 3.4 39.9 1.0
O A:HOH438 3.4 46.1 1.0
CD A:LYS31 3.4 39.1 1.0
O A:HOH524 3.5 54.8 1.0
CA A:LEU162 3.9 13.2 1.0
CB A:ALA163 3.9 16.9 1.0
C A:LEU162 4.0 16.3 1.0
CA A:ALA163 4.1 15.0 1.0
CG2 A:VAL82 4.2 16.8 1.0
O A:HOH525 4.2 40.0 1.0
CD2 A:LEU162 4.3 20.5 1.0
O A:ASP161 4.3 18.2 1.0
CG1 A:VAL82 4.4 18.8 1.0
CB A:VAL82 4.4 17.4 1.0
CB A:LEU162 4.5 13.4 1.0
CG A:LYS31 4.5 30.0 1.0
O A:HOH540 4.5 52.3 1.0
N A:GLY164 4.6 16.4 1.0
O A:HOH420 4.8 25.6 1.0
C A:ALA163 4.9 17.6 1.0

Reference:

A.Kumar, S.Kumar, D.Kumar, A.Mishra, R.P.Dewangan, P.Shrivastava, S.Ramachandran, B.Taneja. The Structure of RV3717 Reveals A Novel Amidase From Mycobacterium Tuberculosis. Acta Crystallogr.,Sect.D V. 69 2543 2013.
ISSN: ISSN 0907-4449
PubMed: 24311595
DOI: 10.1107/S0907444913026371
Page generated: Sat Dec 12 10:53:28 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy