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Chlorine in PDB 4lqj: Two Minutes Iron Loaded Frog M Ferritin

Enzymatic activity of Two Minutes Iron Loaded Frog M Ferritin

All present enzymatic activity of Two Minutes Iron Loaded Frog M Ferritin:
1.16.3.1;

Protein crystallography data

The structure of Two Minutes Iron Loaded Frog M Ferritin, PDB code: 4lqj was solved by S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.14 / 1.20
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 184.548, 184.548, 184.548, 90.00, 90.00, 90.00
R / Rfree (%) 13.6 / 14.5

Other elements in 4lqj:

The structure of Two Minutes Iron Loaded Frog M Ferritin also contains other interesting chemical elements:

Magnesium (Mg) 10 atoms
Iron (Fe) 3 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Chlorine atom in the Two Minutes Iron Loaded Frog M Ferritin (pdb code 4lqj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the Two Minutes Iron Loaded Frog M Ferritin, PDB code: 4lqj:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 12 in 4lqj

Go back to Chlorine Binding Sites List in 4lqj
Chlorine binding site 1 out of 12 in the Two Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Two Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl214

b:13.2
occ:1.00
 O A:HOH536 3.0 30.9 1.0
O A:HOH455 3.1 25.9 1.0
O A:HOH591 3.2 31.2 1.0
N A:TYR8 3.3 7.0 1.0
N A:ASN7 3.4 7.0 1.0
O A:TYR8 3.5 8.1 1.0
CD A:ARG5 3.5 8.4 1.0
NE A:ARG5 3.6 8.2 1.0
CG A:ARG5 3.6 7.8 1.0
O A:HOH395 3.8 20.6 1.0
C A:GLN6 4.0 6.7 1.0
CA A:GLN6 4.0 6.8 1.0
N A:GLN6 4.1 6.8 1.0
C A:TYR8 4.1 7.4 1.0
CA A:ASN7 4.1 7.1 1.0
CA A:TYR8 4.1 7.1 1.0
C A:ASN7 4.2 7.2 1.0
O A:HOH490 4.3 28.7 1.0
C A:ARG5 4.3 7.1 1.0
CB A:TYR8 4.4 7.3 1.0
CB A:ARG5 4.5 7.8 1.0
O A:ARG5 4.5 8.0 1.0
O A:GLN6 4.8 7.0 1.0
CZ A:ARG5 4.8 8.3 1.0
CA A:ARG5 5.0 7.2 1.0

Chlorine binding site 2 out of 12 in 4lqj

Go back to Chlorine Binding Sites List in 4lqj
Chlorine binding site 2 out of 12 in the Two Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Two Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl215

b:10.5
occ:0.20
 FE A:FE2203 1.6 15.2 0.1
NE2 A:HIS169 3.2 8.8 0.4
NE2 A:HIS169 3.2 10.7 0.6
CE1 A:HIS169 3.3 13.8 0.4
CD2 A:LEU165 3.9 12.0 1.0
CE1 A:HIS169 4.0 13.5 0.6
CD2 A:HIS169 4.2 10.5 0.6
CD2 A:HIS169 4.4 12.6 0.4
ND1 A:HIS169 4.5 11.5 0.4

Chlorine binding site 3 out of 12 in 4lqj

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Chlorine binding site 3 out of 12 in the Two Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Two Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl216

b:10.1
occ:0.60
 O A:HOH368 3.0 13.2 1.0
O A:HOH597 3.1 26.4 1.0
O A:HOH417 3.2 23.2 1.0
O A:HOH469 3.3 23.8 1.0
ND2 A:ASN17 3.3 7.0 1.0
CB A:ASN17 3.7 6.5 1.0
CA A:ALA14 4.0 7.3 1.0
O A:HOH568 4.0 32.8 1.0
CG A:ASN17 4.0 6.6 1.0
CB A:VAL77 4.0 9.0 1.0
CB A:ALA14 4.2 8.2 1.0
O A:ALA14 4.2 7.3 1.0
CG2 A:VAL77 4.3 10.3 1.0
CG1 A:VAL77 4.4 10.4 1.0
C A:ALA14 4.6 7.3 1.0
O A:HOH320 4.7 10.8 1.0
O A:HOH525 4.9 30.5 1.0
O A:HOH622 5.0 35.8 1.0

Chlorine binding site 4 out of 12 in 4lqj

Go back to Chlorine Binding Sites List in 4lqj
Chlorine binding site 4 out of 12 in the Two Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Two Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl217

b:17.9
occ:0.80
 O A:HOH489 2.8 24.7 1.0
OG1 A:THR105 3.1 9.6 1.0
O A:HOH326 3.1 11.7 1.0
CG A:GLN101 3.5 9.6 0.5
CA A:LEU102 3.6 8.1 1.0
O A:GLN101 3.6 8.7 1.0
N A:LEU102 3.7 8.1 1.0
C A:GLN101 3.7 8.0 1.0
CB A:THR105 3.8 8.9 1.0
O A:HOH432 4.0 18.9 1.0
CB A:GLN101 4.2 10.0 0.5
CB A:GLN101 4.2 9.5 0.5
CB A:LEU102 4.4 8.3 1.0
CG2 A:THR105 4.4 9.9 1.0
CD1 A:LEU102 4.5 10.7 1.0
CA A:GLN101 4.6 9.8 0.5
CA A:GLN101 4.6 9.4 0.5
O A:HOH501 4.6 26.0 1.0
O A:HOH584 4.7 31.2 1.0
O A:HOH387 4.7 17.1 1.0
O A:HOH404 4.7 20.5 1.0
C A:LEU102 4.7 7.7 1.0
O A:LEU102 4.9 7.9 1.0
O A:HOH436 4.9 20.1 1.0

Chlorine binding site 5 out of 12 in 4lqj

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Chlorine binding site 5 out of 12 in the Two Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Two Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl218

b:15.0
occ:0.60
 O A:HOH381 3.0 17.5 1.0
O A:HOH387 3.1 17.1 1.0
O A:HOH436 3.1 20.1 1.0
O A:HOH580 3.3 36.5 1.0
CG A:GLU85 3.5 16.0 0.3
CB A:GLU85 3.7 15.7 0.3
CD A:ARG86 3.7 10.6 1.0
CZ3 A:TRP89 3.8 8.7 1.0
CB A:GLU85 4.0 18.0 0.5
CG A:ARG86 4.0 9.9 1.0
CH2 A:TRP89 4.3 8.8 1.0
CB A:ALA98 4.4 7.8 1.0
O A:HOH326 4.4 11.7 1.0
O A:HOH625 4.8 37.3 1.0
CE3 A:TRP89 4.8 8.1 1.0
CG A:GLU85 4.9 18.4 0.5
CD A:GLU85 4.9 16.2 0.3
CB A:ARG86 4.9 9.0 1.0
CA A:GLU85 5.0 15.6 0.3

Chlorine binding site 6 out of 12 in 4lqj

Go back to Chlorine Binding Sites List in 4lqj
Chlorine binding site 6 out of 12 in the Two Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Two Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl219

b:15.5
occ:0.60
 O A:HOH470 3.0 29.4 1.0
N A:ASP87 3.1 9.0 1.0
O A:HOH558 3.2 30.2 1.0
N A:GLU88 3.7 9.1 1.0
CA A:ARG86 3.7 9.1 1.0
CB A:ARG86 3.8 9.0 1.0
C A:ARG86 3.9 8.7 1.0
CA A:ASP87 4.0 9.3 1.0
CB A:ASP87 4.0 10.4 1.0
O A:GLU88 4.1 9.5 1.0
CG A:GLU88 4.1 12.6 1.0
CG A:ARG86 4.2 9.9 1.0
O A:HOH480 4.2 27.7 1.0
C A:ASP87 4.3 9.7 1.0
OE2 A:GLU88 4.5 16.5 0.8
NE A:ARG86 4.6 12.2 1.0
CG A:ASP87 4.6 11.2 1.0
OD2 A:ASP87 4.6 14.5 1.0
CA A:GLU88 4.7 9.1 1.0
C A:GLU88 4.8 8.5 1.0
CB A:GLU88 4.8 10.5 1.0
CD A:GLU88 4.8 12.6 0.8
O A:HOH513 4.9 26.1 1.0

Chlorine binding site 7 out of 12 in 4lqj

Go back to Chlorine Binding Sites List in 4lqj
Chlorine binding site 7 out of 12 in the Two Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Two Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl220

b:14.7
occ:0.70
 O A:HOH403 3.0 19.6 1.0
NE2 A:GLN108 3.2 11.2 1.0
O A:HOH494 4.0 30.1 1.0
CD A:GLN108 4.1 10.6 1.0
OE1 A:GLN108 4.1 12.9 1.0
CD1 A:LEU111 4.2 9.0 1.0
CB A:LEU111 4.2 7.9 1.0
OD1 A:ASP112 4.7 11.0 1.0
CG A:LEU111 4.8 8.4 1.0

Chlorine binding site 8 out of 12 in 4lqj

Go back to Chlorine Binding Sites List in 4lqj
Chlorine binding site 8 out of 12 in the Two Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Two Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl221

b:13.9
occ:0.70
 NZ A:LYS82 2.8 9.2 0.5
NZ A:LYS82 3.1 10.0 0.5
CE A:LYS82 3.4 9.2 0.5
O A:HOH532 3.5 30.0 1.0
CE A:LYS82 3.6 9.9 0.5
O A:HOH463 3.8 21.7 1.0
O A:HOH418 4.8 22.8 1.0
CD A:LYS82 4.9 9.0 0.5

Chlorine binding site 9 out of 12 in 4lqj

Go back to Chlorine Binding Sites List in 4lqj
Chlorine binding site 9 out of 12 in the Two Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Two Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl222

b:12.3
occ:0.15
 CE1 A:HIS169 3.6 13.5 0.6
FE A:FE2203 3.6 15.2 0.1
NE2 A:HIS169 4.2 8.8 0.4
ND1 A:HIS169 4.5 12.9 0.6
NE2 A:HIS169 4.5 10.7 0.6
CD2 A:HIS169 4.6 12.6 0.4
O A:HOH495 4.7 31.4 1.0

Chlorine binding site 10 out of 12 in 4lqj

Go back to Chlorine Binding Sites List in 4lqj
Chlorine binding site 10 out of 12 in the Two Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Two Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl223

b:12.7
occ:0.70
 O A:HOH539 3.1 24.5 1.0
N A:GLU136 3.2 10.9 1.0
C A:GLU132 3.3 9.3 1.0
N A:TYR133 3.4 8.5 1.0
N A:GLU135 3.4 9.2 1.0
O A:SER131 3.5 11.3 1.0
O A:GLU132 3.6 10.8 1.0
CB A:GLU135 3.7 10.8 1.0
C A:TYR133 3.7 8.7 1.0
C A:SER131 3.8 9.4 1.0
CA A:GLU135 3.8 9.8 1.0
CA A:GLU132 3.8 9.6 1.0
N A:LEU134 3.9 8.4 1.0
CA A:TYR133 3.9 8.3 1.0
N A:GLU132 3.9 9.1 1.0
CB A:GLU136 3.9 13.9 1.0
C A:GLU135 3.9 9.8 1.0
O A:HOH551 4.0 30.3 1.0
O A:HOH518 4.0 26.6 1.0
O A:TYR133 4.0 9.6 1.0
CG A:GLU136 4.1 12.0 0.5
O A:GLU130 4.1 11.2 1.0
CA A:GLU136 4.1 10.2 1.0
C A:LEU134 4.4 8.9 1.0
CG A:GLU135 4.4 11.3 1.0
CA A:LEU134 4.7 8.8 1.0
CA A:SER131 4.8 11.9 0.5
CA A:SER131 4.8 10.4 0.5
C A:GLU130 4.8 9.3 1.0

Reference:

S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli. Crystallographic Snapshots of Iron in Frog M Ferritin To Be Published.
Page generated: Sat Dec 12 10:53:30 2020

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