Atomistry » Chlorine » PDB 4lxd-4m54 » 4m3k
Atomistry »
  Chlorine »
    PDB 4lxd-4m54 »
      4m3k »

Chlorine in PDB 4m3k: Structure of A Single Domain Camelid Antibody Fragment Cab-H7S in Complex with the Blap Beta-Lactamase From Bacillus Licheniformis

Enzymatic activity of Structure of A Single Domain Camelid Antibody Fragment Cab-H7S in Complex with the Blap Beta-Lactamase From Bacillus Licheniformis

All present enzymatic activity of Structure of A Single Domain Camelid Antibody Fragment Cab-H7S in Complex with the Blap Beta-Lactamase From Bacillus Licheniformis:
3.5.2.6;

Protein crystallography data

The structure of Structure of A Single Domain Camelid Antibody Fragment Cab-H7S in Complex with the Blap Beta-Lactamase From Bacillus Licheniformis, PDB code: 4m3k was solved by C.Pain, F.Kerff, R.Herman, E.Sauvage, S.Preumont, P.Charlier, M.Dumoulin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.90 / 1.48
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.818, 42.940, 74.818, 90.00, 105.29, 90.00
R / Rfree (%) 16.1 / 19.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of A Single Domain Camelid Antibody Fragment Cab-H7S in Complex with the Blap Beta-Lactamase From Bacillus Licheniformis (pdb code 4m3k). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of A Single Domain Camelid Antibody Fragment Cab-H7S in Complex with the Blap Beta-Lactamase From Bacillus Licheniformis, PDB code: 4m3k:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4m3k

Go back to Chlorine Binding Sites List in 4m3k
Chlorine binding site 1 out of 2 in the Structure of A Single Domain Camelid Antibody Fragment Cab-H7S in Complex with the Blap Beta-Lactamase From Bacillus Licheniformis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A Single Domain Camelid Antibody Fragment Cab-H7S in Complex with the Blap Beta-Lactamase From Bacillus Licheniformis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:19.3
occ:1.00
 OH B:TYR37 2.9 17.7 1.0
O A:HOH502 3.0 14.4 1.0
O A:HOH593 3.3 26.9 1.0
NH1 B:ARG45 3.3 15.3 1.0
NZ A:LYS140 3.5 13.5 1.0
ND2 A:ASN136 3.5 12.7 1.0
CZ B:TYR37 3.5 16.1 1.0
NH2 B:ARG45 3.5 16.0 1.0
CE2 B:TYR37 3.5 16.5 1.0
CE A:LYS140 3.8 13.2 1.0
CZ B:ARG45 3.9 14.4 1.0
CG A:ASN136 3.9 11.7 1.0
O A:HOH504 3.9 14.7 1.0
CB A:ASN136 4.0 11.5 1.0
CG A:PHE165 4.3 14.2 1.0
CB A:PHE165 4.3 13.6 1.0
CD1 A:PHE165 4.3 13.1 1.0
CE1 B:TYR37 4.7 15.5 1.0
CD2 B:TYR37 4.7 16.0 1.0
CG1 A:VAL103 4.8 13.7 1.0
OD1 A:ASN136 4.8 12.5 1.0
O A:GLU166 4.9 16.1 1.0
CD2 A:PHE165 4.9 16.5 1.0
CE1 A:PHE165 4.9 13.3 1.0

Chlorine binding site 2 out of 2 in 4m3k

Go back to Chlorine Binding Sites List in 4m3k
Chlorine binding site 2 out of 2 in the Structure of A Single Domain Camelid Antibody Fragment Cab-H7S in Complex with the Blap Beta-Lactamase From Bacillus Licheniformis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of A Single Domain Camelid Antibody Fragment Cab-H7S in Complex with the Blap Beta-Lactamase From Bacillus Licheniformis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:17.7
occ:1.00
 OG B:SER53 3.0 17.8 1.0
N B:SER53 3.4 15.8 1.0
CB B:ASN52 3.5 15.1 1.0
CB B:SER53 3.6 17.6 1.0
CA B:THR32 3.7 15.4 1.0
CA A:GLY143 3.8 13.9 1.0
O B:THR32 3.8 17.0 1.0
CB B:THR32 3.8 15.1 1.0
C B:THR32 3.9 15.4 1.0
CG B:ASN52 4.0 15.5 1.0
CA B:SER53 4.1 16.7 1.0
CG2 B:THR32 4.2 16.1 1.0
ND2 B:ASN52 4.3 15.9 1.0
C B:ASN52 4.3 15.4 1.0
CA B:ASN52 4.4 14.6 1.0
O B:HOH334 4.5 24.1 1.0
N A:GLY143 4.7 13.0 1.0
OD1 B:ASN52 4.7 15.8 1.0
O A:GLY143 4.7 15.4 1.0
O A:HOH551 4.8 26.2 1.0
N B:VAL54 4.8 18.0 1.0
O B:ILE31 4.8 16.9 1.0
C A:GLY143 4.8 13.5 1.0
N B:THR33 4.8 15.0 1.0
C B:SER53 4.9 17.5 1.0
OG A:SER147 4.9 18.1 1.0

Reference:

C.Pain, A.Cosolo, S.Preumont, N.Scarafone, D.Thorn, R.Herman, H.Spiegel, E.Pardon, A.Matagne, P.Charlier, J.Steyaert, C.Damblon, F.Kerff, G.Esposito, M.Dumoulin. Probing the Mechanism of Aggregation of Polyq Model Proteins with Camelid Heavy-Chain Antibody Fragments To Be Published.
Page generated: Sun Jul 21 19:32:09 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy