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Chlorine in PDB 4m75: Crystal Structure of LSM1-7 Complex

Protein crystallography data

The structure of Crystal Structure of LSM1-7 Complex, PDB code: 4m75 was solved by L.Zhou, J.Hang, Y.Zhou, R.Wan, G.Lu, C.Yan, Y.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.66 / 2.95
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 66.672, 67.835, 98.235, 93.14, 108.21, 116.30
R / Rfree (%) 26.6 / 29.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of LSM1-7 Complex (pdb code 4m75). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of LSM1-7 Complex, PDB code: 4m75:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4m75

Go back to Chlorine Binding Sites List in 4m75
Chlorine binding site 1 out of 2 in the Crystal Structure of LSM1-7 Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of LSM1-7 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl101

b:0.9
occ:1.00
CA B:MSE1 3.4 66.8 1.0
CB B:PHE4 3.5 43.3 1.0
O B:GLN34 3.7 57.4 1.0
N B:MSE1 3.8 65.7 1.0
N B:PHE4 4.0 41.9 1.0
C B:MSE1 4.1 67.9 1.0
CG B:MSE1 4.4 67.3 1.0
CA B:PHE4 4.4 43.3 1.0
CA B:GLN34 4.4 61.4 1.0
CB B:GLN34 4.4 62.9 1.0
C B:GLN34 4.5 57.1 1.0
CB B:MSE1 4.5 68.4 1.0
N B:LEU2 4.6 49.6 1.0
CG B:PHE4 4.6 43.3 1.0
O B:MSE1 4.8 69.1 1.0
N B:PHE3 4.8 49.6 1.0

Chlorine binding site 2 out of 2 in 4m75

Go back to Chlorine Binding Sites List in 4m75
Chlorine binding site 2 out of 2 in the Crystal Structure of LSM1-7 Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of LSM1-7 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl101

b:0.1
occ:1.00
OD1 C:ASN38 3.9 37.7 1.0
NH2 C:ARG69 4.0 35.5 1.0
CG B:LEU36 4.2 41.5 1.0
ND1 C:HIS36 4.2 56.1 1.0
O B:GLN34 4.3 57.4 1.0
CB B:LEU36 4.4 36.6 1.0
ND2 C:ASN38 4.5 41.2 1.0
O B:PHE35 4.5 46.4 1.0
CG C:HIS36 4.6 55.0 1.0
CG C:ASN38 4.6 40.2 1.0
CE1 C:HIS36 4.6 57.1 1.0
C B:PHE35 4.7 48.4 1.0
CZ C:ARG69 4.8 34.7 1.0
CB C:HIS36 4.9 54.0 1.0
OD2 C:ASP34 4.9 60.3 1.0
CD1 B:LEU36 5.0 41.4 1.0

Reference:

L.Zhou, J.Hang, Y.Zhou, R.Wan, G.Lu, P.Yin, C.Yan, Y.Shi. Crystal Structures of the Lsm Complex Bound to the 3' End Sequence of U6 Small Nuclear Rna. Nature V. 506 116 2014.
ISSN: ISSN 0028-0836
PubMed: 24240276
DOI: 10.1038/NATURE12803
Page generated: Sat Dec 12 10:54:50 2020

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