Chlorine in PDB 4mcj: Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution
Protein crystallography data
The structure of Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution, PDB code: 4mcj
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.28 /
2.40
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
323.850,
65.629,
102.710,
90.00,
90.48,
90.00
|
R / Rfree (%)
|
18.5 /
21.2
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution
(pdb code 4mcj). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the
Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution, PDB code: 4mcj:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Chlorine binding site 1 out
of 9 in 4mcj
Go back to
Chlorine Binding Sites List in 4mcj
Chlorine binding site 1 out
of 9 in the Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:57.2
occ:1.00
|
CE
|
A:MSE54
|
3.2
|
93.8
|
1.0
|
O
|
A:PRO81
|
3.6
|
30.6
|
1.0
|
N
|
A:ARG83
|
3.8
|
33.6
|
1.0
|
NE2
|
A:GLN97
|
4.1
|
28.1
|
1.0
|
CG2
|
A:ILE52
|
4.1
|
34.6
|
1.0
|
CG
|
A:ARG83
|
4.2
|
28.5
|
1.0
|
CA
|
A:ARG82
|
4.2
|
26.0
|
1.0
|
CD1
|
A:ILE52
|
4.2
|
38.9
|
1.0
|
O
|
A:HOH350
|
4.4
|
43.6
|
1.0
|
CD
|
A:GLN97
|
4.4
|
31.4
|
1.0
|
CB
|
A:ARG83
|
4.4
|
36.2
|
1.0
|
CG
|
A:LEU87
|
4.5
|
36.7
|
1.0
|
OE1
|
A:GLN97
|
4.5
|
35.3
|
1.0
|
C
|
A:ARG82
|
4.5
|
33.4
|
1.0
|
C
|
A:PRO81
|
4.6
|
30.1
|
1.0
|
CD2
|
A:LEU87
|
4.6
|
37.3
|
1.0
|
CA
|
A:ARG83
|
4.7
|
36.0
|
1.0
|
O
|
A:HOH316
|
4.8
|
35.5
|
1.0
|
N
|
A:ARG82
|
4.9
|
25.5
|
1.0
|
CD
|
A:ARG83
|
4.9
|
29.1
|
1.0
|
CD1
|
A:LEU87
|
5.0
|
35.8
|
1.0
|
O
|
A:ARG83
|
5.0
|
41.2
|
1.0
|
|
Chlorine binding site 2 out
of 9 in 4mcj
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Chlorine Binding Sites List in 4mcj
Chlorine binding site 2 out
of 9 in the Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl201
b:64.9
occ:1.00
|
CE
|
B:MSE54
|
3.1
|
79.6
|
1.0
|
O
|
B:PRO81
|
3.5
|
29.3
|
1.0
|
N
|
B:ARG83
|
3.6
|
34.8
|
1.0
|
NE2
|
B:GLN97
|
3.9
|
34.3
|
1.0
|
CG
|
B:ARG83
|
4.1
|
38.0
|
1.0
|
CD
|
B:GLN97
|
4.2
|
39.7
|
1.0
|
OE1
|
B:GLN97
|
4.2
|
33.1
|
1.0
|
CB
|
B:ARG83
|
4.2
|
36.1
|
1.0
|
CA
|
B:ARG82
|
4.2
|
27.5
|
1.0
|
CD2
|
B:LEU87
|
4.3
|
40.0
|
1.0
|
CD1
|
B:ILE52
|
4.4
|
42.3
|
1.0
|
CG2
|
B:ILE52
|
4.4
|
37.8
|
1.0
|
CG
|
B:LEU87
|
4.4
|
38.0
|
1.0
|
C
|
B:ARG82
|
4.5
|
35.1
|
1.0
|
CA
|
B:ARG83
|
4.5
|
36.3
|
1.0
|
C
|
B:PRO81
|
4.5
|
29.8
|
1.0
|
CD
|
B:ARG83
|
4.7
|
38.1
|
1.0
|
NE
|
B:ARG83
|
4.8
|
36.7
|
1.0
|
N
|
B:ARG82
|
4.9
|
26.9
|
1.0
|
CG
|
B:GLN97
|
5.0
|
25.9
|
1.0
|
SE
|
B:MSE54
|
5.0
|
84.0
|
0.8
|
O
|
B:ARG83
|
5.0
|
38.0
|
1.0
|
|
Chlorine binding site 3 out
of 9 in 4mcj
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Chlorine Binding Sites List in 4mcj
Chlorine binding site 3 out
of 9 in the Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl201
b:61.9
occ:1.00
|
CE
|
C:MSE54
|
3.2
|
81.1
|
1.0
|
O
|
C:PRO81
|
3.5
|
29.5
|
1.0
|
N
|
C:ARG83
|
3.9
|
37.5
|
1.0
|
NE2
|
C:GLN97
|
4.0
|
26.2
|
1.0
|
CD1
|
C:ILE52
|
4.1
|
46.1
|
1.0
|
CG2
|
C:ILE52
|
4.2
|
41.4
|
1.0
|
CA
|
C:ARG82
|
4.2
|
31.0
|
1.0
|
CG
|
C:ARG83
|
4.3
|
28.0
|
1.0
|
CD
|
C:GLN97
|
4.3
|
29.9
|
1.0
|
OE1
|
C:GLN97
|
4.4
|
28.5
|
1.0
|
CG
|
C:LEU87
|
4.4
|
40.0
|
1.0
|
CD2
|
C:LEU87
|
4.4
|
41.0
|
1.0
|
CB
|
C:ARG83
|
4.5
|
32.2
|
1.0
|
C
|
C:PRO81
|
4.5
|
30.1
|
1.0
|
C
|
C:ARG82
|
4.6
|
37.9
|
1.0
|
CA
|
C:ARG83
|
4.8
|
38.4
|
1.0
|
N
|
C:ARG82
|
4.8
|
29.8
|
1.0
|
CD
|
C:ARG83
|
4.9
|
22.2
|
1.0
|
SE
|
C:MSE54
|
5.0
|
86.1
|
0.8
|
CD1
|
C:LEU87
|
5.0
|
39.1
|
1.0
|
|
Chlorine binding site 4 out
of 9 in 4mcj
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Chlorine Binding Sites List in 4mcj
Chlorine binding site 4 out
of 9 in the Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl201
b:61.6
occ:1.00
|
CE
|
D:MSE54
|
3.2
|
78.9
|
1.0
|
O
|
D:PRO81
|
3.6
|
26.1
|
1.0
|
N
|
D:ARG83
|
3.8
|
33.4
|
1.0
|
NE2
|
D:GLN97
|
4.0
|
26.1
|
1.0
|
CG
|
D:ARG83
|
4.1
|
34.0
|
1.0
|
CD
|
D:GLN97
|
4.2
|
31.8
|
1.0
|
CD2
|
D:LEU87
|
4.3
|
35.4
|
1.0
|
CG
|
D:LEU87
|
4.3
|
37.3
|
1.0
|
OE1
|
D:GLN97
|
4.3
|
32.3
|
1.0
|
CB
|
D:ARG83
|
4.3
|
34.4
|
1.0
|
CG2
|
D:ILE52
|
4.3
|
38.1
|
1.0
|
CD1
|
D:ILE52
|
4.4
|
38.0
|
1.0
|
CA
|
D:ARG82
|
4.4
|
25.9
|
1.0
|
CD
|
D:ARG83
|
4.6
|
29.9
|
1.0
|
C
|
D:PRO81
|
4.7
|
27.4
|
1.0
|
C
|
D:ARG82
|
4.7
|
34.1
|
1.0
|
CA
|
D:ARG83
|
4.7
|
34.8
|
1.0
|
NE
|
D:ARG83
|
4.8
|
33.2
|
1.0
|
CD1
|
D:LEU87
|
4.9
|
36.8
|
1.0
|
CG
|
D:GLN97
|
5.0
|
25.8
|
1.0
|
|
Chlorine binding site 5 out
of 9 in 4mcj
Go back to
Chlorine Binding Sites List in 4mcj
Chlorine binding site 5 out
of 9 in the Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl201
b:65.8
occ:1.00
|
N
|
F:ARG83
|
3.5
|
34.0
|
1.0
|
O
|
F:PRO81
|
3.6
|
29.6
|
1.0
|
CG
|
F:ARG83
|
4.1
|
34.8
|
1.0
|
CG2
|
F:ILE52
|
4.1
|
38.6
|
1.0
|
CA
|
F:ARG82
|
4.1
|
29.7
|
1.0
|
CB
|
F:ARG83
|
4.2
|
36.2
|
1.0
|
NE2
|
F:GLN97
|
4.3
|
27.2
|
1.0
|
C
|
F:ARG82
|
4.4
|
37.3
|
1.0
|
CA
|
F:ARG83
|
4.4
|
36.0
|
1.0
|
CD2
|
F:LEU87
|
4.5
|
37.8
|
1.0
|
CG
|
F:LEU87
|
4.5
|
39.2
|
1.0
|
SE
|
F:MSE54
|
4.5
|
67.3
|
0.8
|
C
|
F:PRO81
|
4.6
|
32.1
|
1.0
|
CD
|
F:GLN97
|
4.6
|
29.6
|
1.0
|
OE1
|
F:GLN97
|
4.6
|
30.4
|
1.0
|
CD
|
F:ARG83
|
4.7
|
32.6
|
1.0
|
O
|
F:ARG83
|
4.7
|
40.8
|
1.0
|
N
|
F:ARG82
|
4.8
|
29.4
|
1.0
|
O
|
F:LYS85
|
4.9
|
55.5
|
1.0
|
NE
|
F:ARG83
|
5.0
|
38.8
|
1.0
|
CG
|
F:ARG82
|
5.0
|
27.5
|
1.0
|
|
Chlorine binding site 6 out
of 9 in 4mcj
Go back to
Chlorine Binding Sites List in 4mcj
Chlorine binding site 6 out
of 9 in the Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cl201
b:61.6
occ:1.00
|
CE
|
G:MSE54
|
3.0
|
83.6
|
1.0
|
N
|
G:ARG83
|
3.6
|
37.0
|
1.0
|
O
|
G:PRO81
|
3.7
|
36.3
|
1.0
|
CG
|
G:ARG83
|
4.0
|
37.9
|
1.0
|
CB
|
G:ARG83
|
4.1
|
34.7
|
1.0
|
NE2
|
G:GLN97
|
4.3
|
27.5
|
1.0
|
CA
|
G:ARG82
|
4.3
|
34.3
|
1.0
|
CG2
|
G:ILE52
|
4.3
|
43.4
|
1.0
|
CG
|
G:LEU87
|
4.4
|
36.0
|
1.0
|
CD2
|
G:LEU87
|
4.4
|
34.9
|
1.0
|
CD1
|
G:ILE52
|
4.5
|
42.3
|
1.0
|
CA
|
G:ARG83
|
4.5
|
38.1
|
1.0
|
C
|
G:ARG82
|
4.5
|
40.0
|
1.0
|
CD
|
G:GLN97
|
4.5
|
37.4
|
1.0
|
OE1
|
G:GLN97
|
4.5
|
35.8
|
1.0
|
CD
|
G:ARG83
|
4.6
|
34.9
|
1.0
|
C
|
G:PRO81
|
4.7
|
36.4
|
1.0
|
O
|
G:ARG83
|
4.8
|
43.6
|
1.0
|
NE
|
G:ARG83
|
4.8
|
36.0
|
1.0
|
O
|
G:LYS85
|
4.9
|
52.9
|
1.0
|
SE
|
G:MSE54
|
4.9
|
88.0
|
0.8
|
N
|
G:LEU87
|
5.0
|
38.4
|
1.0
|
N
|
G:ARG82
|
5.0
|
34.3
|
1.0
|
|
Chlorine binding site 7 out
of 9 in 4mcj
Go back to
Chlorine Binding Sites List in 4mcj
Chlorine binding site 7 out
of 9 in the Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cl201
b:61.0
occ:1.00
|
CE
|
H:MSE54
|
3.1
|
80.0
|
1.0
|
O
|
H:PRO81
|
3.7
|
31.8
|
1.0
|
N
|
H:ARG83
|
3.9
|
36.7
|
1.0
|
CG2
|
H:ILE52
|
4.1
|
42.4
|
1.0
|
NE2
|
H:GLN97
|
4.1
|
32.5
|
1.0
|
CD1
|
H:ILE52
|
4.3
|
48.0
|
1.0
|
CA
|
H:ARG82
|
4.3
|
31.3
|
1.0
|
CG
|
H:ARG83
|
4.3
|
35.9
|
1.0
|
CD
|
H:GLN97
|
4.4
|
39.6
|
1.0
|
CG
|
H:LEU87
|
4.4
|
40.8
|
1.0
|
CD2
|
H:LEU87
|
4.5
|
43.6
|
1.0
|
OE1
|
H:GLN97
|
4.5
|
35.1
|
1.0
|
CB
|
H:ARG83
|
4.5
|
37.2
|
1.0
|
C
|
H:ARG82
|
4.7
|
38.1
|
1.0
|
C
|
H:PRO81
|
4.7
|
32.4
|
1.0
|
CA
|
H:ARG83
|
4.8
|
38.7
|
1.0
|
CD
|
H:ARG83
|
4.9
|
34.9
|
1.0
|
SE
|
H:MSE54
|
4.9
|
84.4
|
0.8
|
CD1
|
H:LEU87
|
5.0
|
38.7
|
1.0
|
N
|
H:ARG82
|
5.0
|
30.7
|
1.0
|
|
Chlorine binding site 8 out
of 9 in 4mcj
Go back to
Chlorine Binding Sites List in 4mcj
Chlorine binding site 8 out
of 9 in the Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Cl201
b:61.3
occ:1.00
|
O
|
I:PRO81
|
3.5
|
33.6
|
1.0
|
NE2
|
I:GLN97
|
3.8
|
27.6
|
1.0
|
N
|
I:ARG83
|
4.0
|
42.0
|
1.0
|
CD1
|
I:ILE52
|
4.0
|
41.2
|
1.0
|
CD
|
I:GLN97
|
4.1
|
46.5
|
1.0
|
CG2
|
I:ILE52
|
4.3
|
40.4
|
1.0
|
OE1
|
I:GLN97
|
4.3
|
43.3
|
1.0
|
CA
|
I:ARG82
|
4.3
|
33.6
|
1.0
|
CG
|
I:ARG83
|
4.4
|
40.4
|
1.0
|
CG
|
I:LEU87
|
4.4
|
41.5
|
1.0
|
CD2
|
I:LEU87
|
4.5
|
42.2
|
1.0
|
C
|
I:PRO81
|
4.5
|
34.8
|
1.0
|
CB
|
I:ARG83
|
4.6
|
42.0
|
1.0
|
C
|
I:ARG82
|
4.7
|
42.9
|
1.0
|
CG
|
I:GLN97
|
4.8
|
37.3
|
1.0
|
CA
|
I:ARG83
|
4.9
|
44.3
|
1.0
|
N
|
I:ARG82
|
4.9
|
33.1
|
1.0
|
CD
|
I:ARG83
|
4.9
|
46.2
|
1.0
|
CD1
|
I:LEU87
|
4.9
|
40.0
|
1.0
|
O
|
I:HOH351
|
5.0
|
43.2
|
1.0
|
|
Chlorine binding site 9 out
of 9 in 4mcj
Go back to
Chlorine Binding Sites List in 4mcj
Chlorine binding site 9 out
of 9 in the Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of A Hypothetical Protein (BDI_0649) From Parabacteroides Distasonis Atcc 8503 at 2.40 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Cl201
b:63.7
occ:1.00
|
CE
|
J:MSE54
|
3.2
|
99.0
|
1.0
|
O
|
J:PRO81
|
3.3
|
32.7
|
1.0
|
N
|
J:ARG83
|
3.5
|
39.0
|
1.0
|
CG
|
J:ARG83
|
4.0
|
27.6
|
1.0
|
CA
|
J:ARG82
|
4.0
|
34.2
|
1.0
|
NE2
|
J:GLN97
|
4.1
|
29.8
|
1.0
|
CB
|
J:ARG83
|
4.2
|
32.9
|
1.0
|
CD1
|
J:ILE52
|
4.2
|
42.2
|
1.0
|
CG2
|
J:ILE52
|
4.2
|
42.9
|
1.0
|
C
|
J:ARG82
|
4.3
|
41.9
|
1.0
|
C
|
J:PRO81
|
4.3
|
35.0
|
1.0
|
CD
|
J:GLN97
|
4.4
|
40.5
|
1.0
|
CA
|
J:ARG83
|
4.4
|
39.5
|
1.0
|
OE1
|
J:GLN97
|
4.5
|
36.5
|
1.0
|
CD2
|
J:LEU87
|
4.6
|
38.3
|
1.0
|
CG
|
J:LEU87
|
4.6
|
41.2
|
1.0
|
N
|
J:ARG82
|
4.7
|
33.4
|
1.0
|
CD
|
J:ARG83
|
4.7
|
32.8
|
1.0
|
O
|
J:ARG83
|
4.8
|
47.1
|
1.0
|
NE
|
J:ARG83
|
4.9
|
37.7
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sun Jul 21 19:43:13 2024
|