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Chlorine in PDB 4mjy: Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q

Enzymatic activity of Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q

All present enzymatic activity of Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q:
1.16.3.1;

Protein crystallography data

The structure of Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q, PDB code: 4mjy was solved by S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.06 / 1.40
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 183.790, 183.790, 183.790, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 18.5

Other elements in 4mjy:

The structure of Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms
Iron (Fe) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q (pdb code 4mjy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q, PDB code: 4mjy:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 4mjy

Go back to Chlorine Binding Sites List in 4mjy
Chlorine binding site 1 out of 5 in the Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl212

b:16.8
occ:1.00
 O A:HOH503 3.1 38.1 1.0
O A:HOH453 3.2 25.8 1.0
O A:HOH585 3.2 45.8 1.0
N A:TYR8 3.3 8.7 1.0
N A:ASN7 3.4 8.7 1.0
O A:TYR8 3.5 9.4 1.0
CD A:ARG5 3.5 9.5 1.0
NE A:ARG5 3.6 9.7 1.0
CG A:ARG5 3.6 9.3 1.0
O A:HOH374 3.8 17.8 1.0
C A:GLN6 4.0 8.7 1.0
O A:HOH549 4.0 37.7 1.0
C A:TYR8 4.0 9.1 1.0
CA A:GLN6 4.1 8.8 1.0
CA A:TYR8 4.1 8.8 1.0
N A:GLN6 4.1 8.8 1.0
CA A:ASN7 4.1 8.8 1.0
C A:ASN7 4.2 8.7 1.0
C A:ARG5 4.3 8.9 1.0
CB A:TYR8 4.4 8.7 1.0
CB A:ARG5 4.5 9.2 1.0
O A:ARG5 4.6 9.0 1.0
CZ A:ARG5 4.8 9.7 1.0
O A:GLN6 4.8 8.6 1.0
CA A:ARG5 5.0 9.0 1.0

Chlorine binding site 2 out of 5 in 4mjy

Go back to Chlorine Binding Sites List in 4mjy
Chlorine binding site 2 out of 5 in the Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl213

b:7.4
occ:0.20
 FE A:FE2204 2.4 6.6 0.2
NE2 A:HIS169 3.3 9.2 1.0
CE1 A:HIS169 3.4 9.2 1.0
CD2 A:LEU165 3.6 8.5 1.0
CD2 A:HIS169 4.5 9.2 1.0
ND1 A:HIS169 4.5 9.2 1.0
O A:HOH377 4.6 9.2 0.2

Chlorine binding site 3 out of 5 in 4mjy

Go back to Chlorine Binding Sites List in 4mjy
Chlorine binding site 3 out of 5 in the Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl214

b:12.9
occ:0.70
 OG A:SER170 2.8 12.7 1.0
O A:HOH350 2.8 18.5 1.0
CG A:ASN150 3.4 8.2 1.0
ND2 A:ASN150 3.4 8.2 1.0
O A:HOH354 3.4 11.9 1.0
CB A:ASN150 3.5 8.2 1.0
CB A:SER170 3.5 12.4 1.0
CE2 A:PHE166 3.9 8.7 1.0
CD1 A:PHE147 3.9 8.9 1.0
OD1 A:ASN150 4.0 8.4 1.0
CD2 A:PHE166 4.3 8.7 1.0
CE1 A:PHE147 4.3 9.2 1.0
CA A:SER170 4.6 12.5 1.0
CA A:PHE147 4.7 8.1 1.0
O A:ASP146 4.7 8.1 1.0
CZ A:PHE166 4.9 8.7 1.0
CA A:ASN150 5.0 8.3 1.0

Chlorine binding site 4 out of 5 in 4mjy

Go back to Chlorine Binding Sites List in 4mjy
Chlorine binding site 4 out of 5 in the Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl215

b:17.2
occ:0.80
 NZ A:LYS82 2.9 8.4 0.5
NZ A:LYS82 3.2 9.5 0.5
O A:HOH501 3.4 33.1 1.0
CE A:LYS82 3.5 8.4 0.5
CE A:LYS82 3.5 9.2 0.5
O A:HOH426 4.9 20.8 1.0
CD A:LYS82 5.0 8.2 0.5
CD A:LYS82 5.0 8.9 0.5

Chlorine binding site 5 out of 5 in 4mjy

Go back to Chlorine Binding Sites List in 4mjy
Chlorine binding site 5 out of 5 in the Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Sixty Minutes Iron Loaded Frog M Ferritin Mutant H54Q within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl216

b:40.0
occ:1.00
 NH1 A:ARG39 3.2 11.9 1.0
O A:HOH631 3.2 28.4 1.0
O A:HOH502 3.3 33.0 1.0
O A:HOH568 3.3 32.3 1.0
NH2 A:ARG39 3.6 12.2 1.0
CZ A:ARG39 3.8 11.6 1.0
CB A:GLU88 3.9 11.7 1.0
CG A:GLU88 3.9 12.7 1.0
CD A:GLU88 4.7 13.3 0.8
OE1 A:GLU88 4.9 14.1 0.8
O A:HOH337 4.9 13.3 1.0

Reference:

S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli. Crystallographic Snapshots of Iron in Frog M Ferritin To Be Published.
Page generated: Sun Jul 21 19:57:33 2024

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