Atomistry » Chlorine » PDB 4mkk-4mrh » 4mph
Atomistry »
  Chlorine »
    PDB 4mkk-4mrh »
      4mph »

Chlorine in PDB 4mph: Crystal Structure of Baldcb / Vany-Like L,D-Carboxypeptidase Zinc(II)- Bound

Protein crystallography data

The structure of Crystal Structure of Baldcb / Vany-Like L,D-Carboxypeptidase Zinc(II)- Bound, PDB code: 4mph was solved by P.J.Stogios, Z.Wawrzak, O.Onopriyenko, T.Skarina, S.Shatsman, S.N.Peterson, A.Savchenko, W.F.Anderson, Center For Structural Genomicsof Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.31 / 2.03
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 76.831, 112.337, 125.666, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 18.9

Other elements in 4mph:

The structure of Crystal Structure of Baldcb / Vany-Like L,D-Carboxypeptidase Zinc(II)- Bound also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Baldcb / Vany-Like L,D-Carboxypeptidase Zinc(II)- Bound (pdb code 4mph). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Baldcb / Vany-Like L,D-Carboxypeptidase Zinc(II)- Bound, PDB code: 4mph:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4mph

Go back to Chlorine Binding Sites List in 4mph
Chlorine binding site 1 out of 2 in the Crystal Structure of Baldcb / Vany-Like L,D-Carboxypeptidase Zinc(II)- Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Baldcb / Vany-Like L,D-Carboxypeptidase Zinc(II)- Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:48.0
occ:1.00
ZN A:ZN400 2.1 18.2 0.6
OD2 A:ASP167 3.1 20.8 1.0
O A:HOH718 3.2 50.0 1.0
ND1 A:HIS219 3.2 29.4 1.0
OE1 A:GLU216 3.2 23.6 1.0
O A:HOH599 3.2 48.6 1.0
OD1 A:ASP167 3.4 13.3 1.0
NE2 A:HIS160 3.5 22.3 1.0
NE1 A:TRP218 3.5 15.9 1.0
CG A:ASP167 3.6 18.9 1.0
CE1 A:HIS219 4.0 22.6 1.0
CD2 A:HIS160 4.1 24.2 1.0
CD A:GLU216 4.2 25.1 1.0
NH2 A:ARG127 4.2 55.6 1.0
CG A:HIS219 4.2 26.9 1.0
CD1 A:TRP218 4.3 17.5 1.0
CB A:HIS219 4.5 18.1 1.0
OE2 A:GLU216 4.5 27.4 1.0
CE1 A:HIS160 4.6 27.9 1.0
CE2 A:TRP218 4.6 18.3 1.0
O A:HOH697 4.7 49.7 1.0

Chlorine binding site 2 out of 2 in 4mph

Go back to Chlorine Binding Sites List in 4mph
Chlorine binding site 2 out of 2 in the Crystal Structure of Baldcb / Vany-Like L,D-Carboxypeptidase Zinc(II)- Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Baldcb / Vany-Like L,D-Carboxypeptidase Zinc(II)- Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:54.0
occ:1.00
ZN B:ZN301 2.1 17.6 0.5
O B:HOH642 2.5 44.5 1.0
OD2 B:ASP167 3.1 20.7 1.0
ND1 B:HIS219 3.2 25.7 1.0
OE1 B:GLU216 3.3 31.4 1.0
NE1 B:TRP218 3.4 25.2 1.0
OD1 B:ASP167 3.5 18.8 1.0
NE2 B:HIS160 3.5 23.0 1.0
CG B:ASP167 3.6 22.4 1.0
CE1 B:HIS219 4.0 29.5 1.0
CG B:HIS219 4.2 28.9 1.0
CD2 B:HIS160 4.3 19.4 1.0
CD1 B:TRP218 4.3 25.9 1.0
CD B:GLU216 4.3 37.1 1.0
CB B:HIS219 4.4 23.6 1.0
CE2 B:TRP218 4.5 28.1 1.0
O B:HOH604 4.5 56.3 1.0
O B:HOH513 4.5 56.0 1.0
CE1 B:HIS160 4.6 24.2 1.0
OE2 B:GLU216 4.7 42.1 1.0
CZ2 B:TRP218 4.8 29.5 1.0
O B:HOH435 4.8 45.3 1.0

Reference:

C.N.Hoyland, C.Aldridge, R.M.Cleverley, M.C.Duchene, G.Minasov, O.Onopriyenko, K.Sidiq, P.J.Stogios, W.F.Anderson, R.A.Daniel, A.Savchenko, W.Vollmer, R.J.Lewis. Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition. Structure V. 22 949 2014.
ISSN: ISSN 0969-2126
PubMed: 24909784
DOI: 10.1016/J.STR.2014.04.015
Page generated: Sat Dec 12 10:56:26 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy