Atomistry » Chlorine » PDB 4ms4-4myo » 4my7
Atomistry »
  Chlorine »
    PDB 4ms4-4myo »
      4my7 »

Chlorine in PDB 4my7: Frog M Ferritin Iron-Loaded Under Anaerobic Environment

Enzymatic activity of Frog M Ferritin Iron-Loaded Under Anaerobic Environment

All present enzymatic activity of Frog M Ferritin Iron-Loaded Under Anaerobic Environment:
1.16.3.1;

Protein crystallography data

The structure of Frog M Ferritin Iron-Loaded Under Anaerobic Environment, PDB code: 4my7 was solved by S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.11 / 1.48
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 183.830, 183.830, 183.830, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 19.5

Other elements in 4my7:

The structure of Frog M Ferritin Iron-Loaded Under Anaerobic Environment also contains other interesting chemical elements:

Magnesium (Mg) 8 atoms
Iron (Fe) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment (pdb code 4my7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment, PDB code: 4my7:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 1 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl214

b:22.3
occ:1.00
N A:ASP87 3.1 12.4 1.0
O A:HOH618 3.3 32.9 1.0
N A:GLU88 3.6 12.5 1.0
CA A:ARG86 3.8 12.6 1.0
CB A:ARG86 3.8 13.2 1.0
CG A:GLU88 3.9 15.1 1.0
C A:ARG86 3.9 12.5 1.0
CA A:ASP87 4.0 12.8 1.0
CB A:ASP87 4.0 13.3 1.0
O A:GLU88 4.0 11.7 1.0
OE2 A:GLU88 4.1 17.5 0.7
C A:ASP87 4.3 12.8 1.0
CG A:ARG86 4.3 14.0 1.0
CD A:GLU88 4.4 16.1 0.7
O A:HOH515 4.4 32.4 1.0
NE A:ARG86 4.5 16.2 0.7
CA A:GLU88 4.6 12.5 1.0
CG A:ASP87 4.6 13.8 1.0
OD2 A:ASP87 4.6 15.0 1.0
O A:HOH531 4.7 39.5 1.0
C A:GLU88 4.7 11.7 1.0
CB A:GLU88 4.8 13.7 1.0

Chlorine binding site 2 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 2 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl215

b:16.5
occ:1.00
O A:HOH526 3.2 39.5 1.0
O A:HOH472 3.2 27.4 1.0
O A:HOH535 3.3 38.6 1.0
N A:TYR8 3.3 9.3 1.0
N A:ASN7 3.4 9.4 1.0
O A:TYR8 3.5 10.1 1.0
CD A:ARG5 3.5 10.5 1.0
CG A:ARG5 3.6 10.3 1.0
NE A:ARG5 3.6 10.8 1.0
O A:HOH371 3.9 19.3 1.0
C A:GLN6 3.9 9.4 1.0
CA A:GLN6 4.0 9.5 1.0
CA A:ASN7 4.1 9.4 1.0
N A:GLN6 4.1 9.6 1.0
C A:TYR8 4.1 9.7 1.0
CA A:TYR8 4.1 9.5 1.0
C A:ASN7 4.2 9.3 1.0
C A:ARG5 4.3 9.8 1.0
CB A:TYR8 4.4 9.3 1.0
CB A:ARG5 4.5 10.1 1.0
O A:ARG5 4.5 9.9 1.0
O A:GLN6 4.8 9.2 1.0
CZ A:ARG5 4.9 10.9 1.0
CA A:ARG5 5.0 9.8 1.0

Chlorine binding site 3 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 3 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl216

b:17.9
occ:1.00
O A:HOH373 3.0 15.8 1.0
O A:HOH424 3.1 24.3 1.0
O A:HOH586 3.2 34.8 1.0
O A:HOH451 3.3 29.1 1.0
ND2 A:ASN17 3.3 8.7 1.0
CB A:ASN17 3.7 8.6 1.0
CA A:ALA14 4.0 8.7 1.0
O A:HOH518 4.0 32.8 1.0
CB A:VAL77 4.0 9.8 1.0
CG A:ASN17 4.0 8.7 1.0
CB A:ALA14 4.1 8.8 1.0
O A:ALA14 4.2 8.8 1.0
CG2 A:VAL77 4.3 10.1 1.0
CG1 A:VAL77 4.4 10.5 1.0
C A:ALA14 4.6 8.7 1.0
O A:HOH560 4.7 33.6 1.0
O A:HOH307 4.8 13.2 1.0
O A:HOH527 5.0 27.6 1.0

Chlorine binding site 4 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 4 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl217

b:12.6
occ:0.20
FE A:FE2205 2.0 13.5 0.2
NE2 A:HIS169 3.3 14.4 1.0
CE1 A:HIS169 3.4 14.6 1.0
CD2 A:LEU165 3.7 12.1 1.0
O A:HOH443 4.5 14.1 0.2
CD2 A:HIS169 4.5 14.3 1.0
ND1 A:HIS169 4.5 14.5 1.0

Chlorine binding site 5 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 5 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl218

b:74.4
occ:1.00
O A:HOH490 2.9 29.4 1.0
O A:HOH337 3.1 14.5 1.0
OG1 A:THR105 3.2 10.2 1.0
CG A:GLN101 3.6 10.6 0.5
O A:GLN101 3.7 10.4 1.0
O A:HOH493 3.8 23.7 1.0
C A:GLN101 3.8 10.3 1.0
CA A:LEU102 3.8 10.4 1.0
N A:LEU102 3.8 10.3 1.0
CB A:THR105 4.0 9.8 1.0
CB A:GLN101 4.1 10.4 0.5
CB A:GLN101 4.2 10.4 0.5
CB A:LEU102 4.5 10.7 1.0
CG2 A:THR105 4.6 10.0 1.0
CA A:GLN101 4.6 10.3 0.5
CA A:GLN101 4.6 10.3 0.5
O A:HOH394 4.7 21.1 1.0
CD1 A:LEU102 4.7 11.2 1.0
O A:HOH556 4.8 34.7 1.0
O A:HOH387 4.8 20.3 1.0
O A:HOH590 4.8 38.2 1.0
C A:LEU102 5.0 10.4 1.0

Chlorine binding site 6 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 6 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl219

b:15.3
occ:0.70
O A:HOH356 3.0 20.5 1.0
NE2 A:GLN108 3.2 11.5 1.0
NZ A:LYS115 3.3 14.9 0.7
O A:HOH495 4.1 32.2 1.0
CD A:GLN108 4.1 11.0 1.0
OE1 A:GLN108 4.1 12.0 1.0
CD1 A:LEU111 4.2 9.9 1.0
CB A:LEU111 4.2 9.5 1.0
CE A:LYS115 4.6 14.6 0.7
OD1 A:ASP112 4.7 12.6 1.0
CG A:LEU111 4.8 9.6 1.0
O A:HOH336 5.0 11.8 1.0

Reference:

S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli. Crystallographic Snapshots of Iron in Frog M Ferritin To Be Published.
Page generated: Sun Jul 21 20:20:59 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy