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Chlorine in PDB 4my7: Frog M Ferritin Iron-Loaded Under Anaerobic Environment

Enzymatic activity of Frog M Ferritin Iron-Loaded Under Anaerobic Environment

All present enzymatic activity of Frog M Ferritin Iron-Loaded Under Anaerobic Environment:
1.16.3.1;

Protein crystallography data

The structure of Frog M Ferritin Iron-Loaded Under Anaerobic Environment, PDB code: 4my7 was solved by S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.11 / 1.48
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 183.830, 183.830, 183.830, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 19.5

Other elements in 4my7:

The structure of Frog M Ferritin Iron-Loaded Under Anaerobic Environment also contains other interesting chemical elements:

Magnesium (Mg) 8 atoms
Iron (Fe) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment (pdb code 4my7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment, PDB code: 4my7:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 1 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl214

b:22.3
occ:1.00
 N A:ASP87 3.1 12.4 1.0
O A:HOH618 3.3 32.9 1.0
N A:GLU88 3.6 12.5 1.0
CA A:ARG86 3.8 12.6 1.0
CB A:ARG86 3.8 13.2 1.0
CG A:GLU88 3.9 15.1 1.0
C A:ARG86 3.9 12.5 1.0
CA A:ASP87 4.0 12.8 1.0
CB A:ASP87 4.0 13.3 1.0
O A:GLU88 4.0 11.7 1.0
OE2 A:GLU88 4.1 17.5 0.7
C A:ASP87 4.3 12.8 1.0
CG A:ARG86 4.3 14.0 1.0
CD A:GLU88 4.4 16.1 0.7
O A:HOH515 4.4 32.4 1.0
NE A:ARG86 4.5 16.2 0.7
CA A:GLU88 4.6 12.5 1.0
CG A:ASP87 4.6 13.8 1.0
OD2 A:ASP87 4.6 15.0 1.0
O A:HOH531 4.7 39.5 1.0
C A:GLU88 4.7 11.7 1.0
CB A:GLU88 4.8 13.7 1.0

Chlorine binding site 2 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 2 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl215

b:16.5
occ:1.00
 O A:HOH526 3.2 39.5 1.0
O A:HOH472 3.2 27.4 1.0
O A:HOH535 3.3 38.6 1.0
N A:TYR8 3.3 9.3 1.0
N A:ASN7 3.4 9.4 1.0
O A:TYR8 3.5 10.1 1.0
CD A:ARG5 3.5 10.5 1.0
CG A:ARG5 3.6 10.3 1.0
NE A:ARG5 3.6 10.8 1.0
O A:HOH371 3.9 19.3 1.0
C A:GLN6 3.9 9.4 1.0
CA A:GLN6 4.0 9.5 1.0
CA A:ASN7 4.1 9.4 1.0
N A:GLN6 4.1 9.6 1.0
C A:TYR8 4.1 9.7 1.0
CA A:TYR8 4.1 9.5 1.0
C A:ASN7 4.2 9.3 1.0
C A:ARG5 4.3 9.8 1.0
CB A:TYR8 4.4 9.3 1.0
CB A:ARG5 4.5 10.1 1.0
O A:ARG5 4.5 9.9 1.0
O A:GLN6 4.8 9.2 1.0
CZ A:ARG5 4.9 10.9 1.0
CA A:ARG5 5.0 9.8 1.0

Chlorine binding site 3 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 3 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl216

b:17.9
occ:1.00
 O A:HOH373 3.0 15.8 1.0
O A:HOH424 3.1 24.3 1.0
O A:HOH586 3.2 34.8 1.0
O A:HOH451 3.3 29.1 1.0
ND2 A:ASN17 3.3 8.7 1.0
CB A:ASN17 3.7 8.6 1.0
CA A:ALA14 4.0 8.7 1.0
O A:HOH518 4.0 32.8 1.0
CB A:VAL77 4.0 9.8 1.0
CG A:ASN17 4.0 8.7 1.0
CB A:ALA14 4.1 8.8 1.0
O A:ALA14 4.2 8.8 1.0
CG2 A:VAL77 4.3 10.1 1.0
CG1 A:VAL77 4.4 10.5 1.0
C A:ALA14 4.6 8.7 1.0
O A:HOH560 4.7 33.6 1.0
O A:HOH307 4.8 13.2 1.0
O A:HOH527 5.0 27.6 1.0

Chlorine binding site 4 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 4 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl217

b:12.6
occ:0.20
 FE A:FE2205 2.0 13.5 0.2
NE2 A:HIS169 3.3 14.4 1.0
CE1 A:HIS169 3.4 14.6 1.0
CD2 A:LEU165 3.7 12.1 1.0
O A:HOH443 4.5 14.1 0.2
CD2 A:HIS169 4.5 14.3 1.0
ND1 A:HIS169 4.5 14.5 1.0

Chlorine binding site 5 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 5 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl218

b:74.4
occ:1.00
 O A:HOH490 2.9 29.4 1.0
O A:HOH337 3.1 14.5 1.0
OG1 A:THR105 3.2 10.2 1.0
CG A:GLN101 3.6 10.6 0.5
O A:GLN101 3.7 10.4 1.0
O A:HOH493 3.8 23.7 1.0
C A:GLN101 3.8 10.3 1.0
CA A:LEU102 3.8 10.4 1.0
N A:LEU102 3.8 10.3 1.0
CB A:THR105 4.0 9.8 1.0
CB A:GLN101 4.1 10.4 0.5
CB A:GLN101 4.2 10.4 0.5
CB A:LEU102 4.5 10.7 1.0
CG2 A:THR105 4.6 10.0 1.0
CA A:GLN101 4.6 10.3 0.5
CA A:GLN101 4.6 10.3 0.5
O A:HOH394 4.7 21.1 1.0
CD1 A:LEU102 4.7 11.2 1.0
O A:HOH556 4.8 34.7 1.0
O A:HOH387 4.8 20.3 1.0
O A:HOH590 4.8 38.2 1.0
C A:LEU102 5.0 10.4 1.0

Chlorine binding site 6 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 6 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl219

b:15.3
occ:0.70
 O A:HOH356 3.0 20.5 1.0
NE2 A:GLN108 3.2 11.5 1.0
NZ A:LYS115 3.3 14.9 0.7
O A:HOH495 4.1 32.2 1.0
CD A:GLN108 4.1 11.0 1.0
OE1 A:GLN108 4.1 12.0 1.0
CD1 A:LEU111 4.2 9.9 1.0
CB A:LEU111 4.2 9.5 1.0
CE A:LYS115 4.6 14.6 0.7
OD1 A:ASP112 4.7 12.6 1.0
CG A:LEU111 4.8 9.6 1.0
O A:HOH336 5.0 11.8 1.0

Reference:

S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli. Crystallographic Snapshots of Iron in Frog M Ferritin To Be Published.
Page generated: Sun Jul 21 20:20:59 2024

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