Chlorine in PDB 4my7: Frog M Ferritin Iron-Loaded Under Anaerobic Environment

Enzymatic activity of Frog M Ferritin Iron-Loaded Under Anaerobic Environment

All present enzymatic activity of Frog M Ferritin Iron-Loaded Under Anaerobic Environment:
1.16.3.1;

Protein crystallography data

The structure of Frog M Ferritin Iron-Loaded Under Anaerobic Environment, PDB code: 4my7 was solved by S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.11 / 1.48
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 183.830, 183.830, 183.830, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 19.5

Other elements in 4my7:

The structure of Frog M Ferritin Iron-Loaded Under Anaerobic Environment also contains other interesting chemical elements:

Magnesium (Mg) 8 atoms
Iron (Fe) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment (pdb code 4my7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment, PDB code: 4my7:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 1 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl214

b:22.3
occ:1.00
N A:ASP87 3.1 12.4 1.0
O A:HOH618 3.3 32.9 1.0
N A:GLU88 3.6 12.5 1.0
CA A:ARG86 3.8 12.6 1.0
CB A:ARG86 3.8 13.2 1.0
CG A:GLU88 3.9 15.1 1.0
C A:ARG86 3.9 12.5 1.0
CA A:ASP87 4.0 12.8 1.0
CB A:ASP87 4.0 13.3 1.0
O A:GLU88 4.0 11.7 1.0
OE2 A:GLU88 4.1 17.5 0.7
C A:ASP87 4.3 12.8 1.0
CG A:ARG86 4.3 14.0 1.0
CD A:GLU88 4.4 16.1 0.7
O A:HOH515 4.4 32.4 1.0
NE A:ARG86 4.5 16.2 0.7
CA A:GLU88 4.6 12.5 1.0
CG A:ASP87 4.6 13.8 1.0
OD2 A:ASP87 4.6 15.0 1.0
O A:HOH531 4.7 39.5 1.0
C A:GLU88 4.7 11.7 1.0
CB A:GLU88 4.8 13.7 1.0

Chlorine binding site 2 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 2 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl215

b:16.5
occ:1.00
O A:HOH526 3.2 39.5 1.0
O A:HOH472 3.2 27.4 1.0
O A:HOH535 3.3 38.6 1.0
N A:TYR8 3.3 9.3 1.0
N A:ASN7 3.4 9.4 1.0
O A:TYR8 3.5 10.1 1.0
CD A:ARG5 3.5 10.5 1.0
CG A:ARG5 3.6 10.3 1.0
NE A:ARG5 3.6 10.8 1.0
O A:HOH371 3.9 19.3 1.0
C A:GLN6 3.9 9.4 1.0
CA A:GLN6 4.0 9.5 1.0
CA A:ASN7 4.1 9.4 1.0
N A:GLN6 4.1 9.6 1.0
C A:TYR8 4.1 9.7 1.0
CA A:TYR8 4.1 9.5 1.0
C A:ASN7 4.2 9.3 1.0
C A:ARG5 4.3 9.8 1.0
CB A:TYR8 4.4 9.3 1.0
CB A:ARG5 4.5 10.1 1.0
O A:ARG5 4.5 9.9 1.0
O A:GLN6 4.8 9.2 1.0
CZ A:ARG5 4.9 10.9 1.0
CA A:ARG5 5.0 9.8 1.0

Chlorine binding site 3 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 3 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl216

b:17.9
occ:1.00
O A:HOH373 3.0 15.8 1.0
O A:HOH424 3.1 24.3 1.0
O A:HOH586 3.2 34.8 1.0
O A:HOH451 3.3 29.1 1.0
ND2 A:ASN17 3.3 8.7 1.0
CB A:ASN17 3.7 8.6 1.0
CA A:ALA14 4.0 8.7 1.0
O A:HOH518 4.0 32.8 1.0
CB A:VAL77 4.0 9.8 1.0
CG A:ASN17 4.0 8.7 1.0
CB A:ALA14 4.1 8.8 1.0
O A:ALA14 4.2 8.8 1.0
CG2 A:VAL77 4.3 10.1 1.0
CG1 A:VAL77 4.4 10.5 1.0
C A:ALA14 4.6 8.7 1.0
O A:HOH560 4.7 33.6 1.0
O A:HOH307 4.8 13.2 1.0
O A:HOH527 5.0 27.6 1.0

Chlorine binding site 4 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 4 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl217

b:12.6
occ:0.20
FE A:FE2205 2.0 13.5 0.2
NE2 A:HIS169 3.3 14.4 1.0
CE1 A:HIS169 3.4 14.6 1.0
CD2 A:LEU165 3.7 12.1 1.0
O A:HOH443 4.5 14.1 0.2
CD2 A:HIS169 4.5 14.3 1.0
ND1 A:HIS169 4.5 14.5 1.0

Chlorine binding site 5 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 5 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl218

b:74.4
occ:1.00
O A:HOH490 2.9 29.4 1.0
O A:HOH337 3.1 14.5 1.0
OG1 A:THR105 3.2 10.2 1.0
CG A:GLN101 3.6 10.6 0.5
O A:GLN101 3.7 10.4 1.0
O A:HOH493 3.8 23.7 1.0
C A:GLN101 3.8 10.3 1.0
CA A:LEU102 3.8 10.4 1.0
N A:LEU102 3.8 10.3 1.0
CB A:THR105 4.0 9.8 1.0
CB A:GLN101 4.1 10.4 0.5
CB A:GLN101 4.2 10.4 0.5
CB A:LEU102 4.5 10.7 1.0
CG2 A:THR105 4.6 10.0 1.0
CA A:GLN101 4.6 10.3 0.5
CA A:GLN101 4.6 10.3 0.5
O A:HOH394 4.7 21.1 1.0
CD1 A:LEU102 4.7 11.2 1.0
O A:HOH556 4.8 34.7 1.0
O A:HOH387 4.8 20.3 1.0
O A:HOH590 4.8 38.2 1.0
C A:LEU102 5.0 10.4 1.0

Chlorine binding site 6 out of 6 in 4my7

Go back to Chlorine Binding Sites List in 4my7
Chlorine binding site 6 out of 6 in the Frog M Ferritin Iron-Loaded Under Anaerobic Environment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Frog M Ferritin Iron-Loaded Under Anaerobic Environment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl219

b:15.3
occ:0.70
O A:HOH356 3.0 20.5 1.0
NE2 A:GLN108 3.2 11.5 1.0
NZ A:LYS115 3.3 14.9 0.7
O A:HOH495 4.1 32.2 1.0
CD A:GLN108 4.1 11.0 1.0
OE1 A:GLN108 4.1 12.0 1.0
CD1 A:LEU111 4.2 9.9 1.0
CB A:LEU111 4.2 9.5 1.0
CE A:LYS115 4.6 14.6 0.7
OD1 A:ASP112 4.7 12.6 1.0
CG A:LEU111 4.8 9.6 1.0
O A:HOH336 5.0 11.8 1.0

Reference:

S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli. Crystallographic Snapshots of Iron in Frog M Ferritin To Be Published.
Page generated: Sat Dec 12 10:57:24 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy