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Chlorine in PDB 4mzy: Crystal Structure of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase with Malonate and Phosphate Bound

Enzymatic activity of Crystal Structure of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase with Malonate and Phosphate Bound

All present enzymatic activity of Crystal Structure of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase with Malonate and Phosphate Bound:
2.4.2.11;

Protein crystallography data

The structure of Crystal Structure of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase with Malonate and Phosphate Bound, PDB code: 4mzy was solved by Y.Patskovsky, R.Toro, S.R.Wasserman, S.C.Almo, S.K.Burley, New York Sgxresearch Center For Structural Genomics (Nysgxrc), New Yorkstructural Genomics Research Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.78 / 1.95
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 71.254, 111.381, 154.604, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 18.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase with Malonate and Phosphate Bound (pdb code 4mzy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase with Malonate and Phosphate Bound, PDB code: 4mzy:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4mzy

Go back to Chlorine Binding Sites List in 4mzy
Chlorine binding site 1 out of 4 in the Crystal Structure of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase with Malonate and Phosphate Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase with Malonate and Phosphate Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl518

b:38.7
occ:1.00
 NH2 A:ARG163 3.1 71.8 1.0
NH1 A:ARG164 3.2 39.5 1.0
CD A:ARG163 3.7 46.6 1.0
CZ A:ARG163 4.1 83.8 1.0
C2 A:MLA515 4.3 56.3 1.0
NE A:ARG163 4.3 44.3 1.0
CZ A:ARG164 4.4 61.3 1.0
NH2 A:ARG164 4.8 65.1 1.0
CG A:ARG163 4.9 30.6 1.0

Chlorine binding site 2 out of 4 in 4mzy

Go back to Chlorine Binding Sites List in 4mzy
Chlorine binding site 2 out of 4 in the Crystal Structure of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase with Malonate and Phosphate Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase with Malonate and Phosphate Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl519

b:64.5
occ:1.00
 NE A:ARG274 3.2 50.8 1.0
NH2 A:ARG274 3.5 56.8 1.0
CZ A:ARG274 3.8 48.7 1.0
CB A:LEU238 4.0 29.8 1.0
CD1 A:LEU238 4.2 35.0 1.0
CD A:ARG274 4.2 31.5 1.0
CG A:ARG274 4.2 34.0 1.0
NE2 A:GLN278 4.4 33.5 1.0
CG A:LEU238 4.7 33.8 1.0
O A:LEU238 4.8 26.8 1.0

Chlorine binding site 3 out of 4 in 4mzy

Go back to Chlorine Binding Sites List in 4mzy
Chlorine binding site 3 out of 4 in the Crystal Structure of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase with Malonate and Phosphate Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase with Malonate and Phosphate Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl521

b:63.6
occ:1.00
 O A:HOH768 2.8 53.1 1.0
O A:HOH769 2.8 44.0 0.5
O A:HOH638 3.0 47.9 1.0
O A:HOH769 3.0 31.9 0.5
OG1 A:THR202 3.2 27.6 1.0
N A:THR202 3.4 27.3 1.0
CA A:GLY201 3.9 33.0 1.0
NE A:ARG262 4.0 48.4 1.0
C A:GLY201 4.1 33.1 1.0
CB A:THR202 4.1 27.5 1.0
CG1 A:VAL229 4.2 28.0 1.0
CB A:VAL229 4.2 24.8 1.0
CG2 A:THR202 4.3 26.6 1.0
CA A:THR202 4.3 30.4 1.0
CD A:ARG262 4.4 32.5 1.0
N A:GLY201 4.7 26.0 1.0
CG2 A:VAL229 4.8 25.2 1.0
CZ A:ARG262 4.9 70.6 1.0
CZ A:PHE160 4.9 40.9 0.5
CD2 A:TYR290 5.0 30.4 1.0

Chlorine binding site 4 out of 4 in 4mzy

Go back to Chlorine Binding Sites List in 4mzy
Chlorine binding site 4 out of 4 in the Crystal Structure of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase with Malonate and Phosphate Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase with Malonate and Phosphate Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl522

b:72.1
occ:1.00
 O A:HOH767 2.9 48.5 1.0
OG A:SER200 3.0 35.7 0.5
O A:HOH768 3.1 53.1 1.0
N A:GLY201 3.2 26.0 1.0
CB A:SER200 3.9 46.6 0.5
CB A:SER200 3.9 46.0 0.5
C A:GLY201 3.9 33.1 1.0
CA A:SER200 3.9 26.1 0.5
O A:GLY201 3.9 37.0 1.0
CA A:SER200 4.0 25.7 0.5
CA A:GLY201 4.0 33.0 1.0
CG2 A:THR202 4.0 26.6 1.0
C A:SER200 4.1 30.0 1.0
N A:THR202 4.5 27.3 1.0
O A:HOH659 4.9 48.4 1.0
OG A:SER200 4.9 35.9 0.5

Reference:

Y.Patskovsky, R.Toro, S.R.Wasserman, S.K.Burley, S.C.Almo. Crystal Structure of Enterococcus Faecalis Nicotinate Phosphoribosyltransferase To Be Published.
Page generated: Sun Jul 21 20:24:21 2024

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