Atomistry » Chlorine » PDB 4myq-4n98 » 4n0j
Atomistry »
  Chlorine »
    PDB 4myq-4n98 »
      4n0j »

Chlorine in PDB 4n0j: Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution

Enzymatic activity of Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution

All present enzymatic activity of Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution, PDB code: 4n0j was solved by R.E.Mcgovern, P.B.Crowley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.20 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.850, 30.200, 94.210, 90.00, 96.31, 90.00
R / Rfree (%) 16.8 / 21

Other elements in 4n0j:

The structure of Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution (pdb code 4n0j). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution, PDB code: 4n0j:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4n0j

Go back to Chlorine Binding Sites List in 4n0j
Chlorine binding site 1 out of 3 in the Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:15.9
occ:1.00
 OG A:SER24 3.2 10.5 1.0
N A:GLY26 3.2 9.4 1.0
CB A:SER24 3.5 10.2 1.0
CA A:GLN121 3.6 10.8 1.0
CA A:GLY26 3.6 9.1 1.0
CG A:GLN121 3.8 12.9 1.0
CB A:GLN121 3.9 11.8 1.0
CD1 A:ILE124 3.9 12.1 1.0
N A:GLN121 3.9 10.0 1.0
N A:LEU25 4.1 9.8 1.0
C A:SER24 4.2 9.7 1.0
CG2 A:VAL120 4.2 9.7 1.0
C A:VAL120 4.3 9.8 1.0
C A:LEU25 4.4 9.7 1.0
O A:VAL120 4.4 9.2 1.0
CG1 A:ILE124 4.4 11.6 1.0
O A:HOH335 4.4 31.2 1.0
CA A:SER24 4.5 10.0 1.0
O A:SER24 4.6 9.8 1.0
C A:GLY26 4.6 9.0 1.0
CA A:LEU25 4.6 9.8 1.0
N A:ASN27 4.7 9.0 1.0
C A:GLN121 4.8 10.5 1.0
O A:HOH327 4.9 36.8 1.0
CB A:LEU25 4.9 10.0 1.0
CD A:GLN121 5.0 13.9 1.0

Chlorine binding site 2 out of 3 in 4n0j

Go back to Chlorine Binding Sites List in 4n0j
Chlorine binding site 2 out of 3 in the Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl203

b:27.9
occ:1.00
 N B:CYS6 3.3 12.3 1.0
O B:HOH302 3.4 36.8 1.0
C B:GLY4 3.4 11.5 1.0
CA B:GLY4 3.4 11.5 1.0
N B:GLU7 3.5 11.2 1.0
CB B:CYS6 3.5 13.6 1.0
N B:ARG5 3.6 11.5 1.0
CA B:CYS6 3.8 12.5 1.0
CG B:GLU7 3.8 12.6 0.5
CG B:GLU7 3.9 10.8 0.5
O B:GLY4 3.9 11.1 1.0
C B:CYS6 4.1 11.8 1.0
C B:ARG5 4.2 12.0 1.0
OE1 B:GLU7 4.2 13.8 0.5
CD B:GLU7 4.3 10.7 0.5
N B:GLY4 4.3 11.3 1.0
SG B:CYS6 4.4 15.1 1.0
CB B:GLU7 4.4 10.8 0.5
CB B:GLU7 4.4 11.8 0.5
CA B:ARG5 4.5 12.2 1.0
CD B:GLU7 4.5 13.2 0.5
CA B:GLU7 4.5 11.3 0.5
CA B:GLU7 4.5 10.9 0.5
OE1 B:GLU7 4.5 10.8 0.5
O B:HOH336 4.7 25.2 1.0
CG B:ARG5 4.8 13.4 1.0
OE2 B:GLU7 5.0 10.4 0.5

Chlorine binding site 3 out of 3 in 4n0j

Go back to Chlorine Binding Sites List in 4n0j
Chlorine binding site 3 out of 3 in the Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Dimethyllysine Hen Egg-White Lysozyme in Complex with SCLX4 at 1.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl204

b:10.5
occ:1.00
 OG B:SER24 3.0 9.4 1.0
O B:HOH352 3.1 24.2 1.0
O3 B:GOL206 3.1 33.5 1.0
N B:GLY26 3.2 7.9 1.0
CB B:SER24 3.5 8.9 1.0
CA B:GLY26 3.6 7.6 1.0
CA B:GLN121 3.6 13.0 1.0
N B:GLN121 3.9 12.8 1.0
CB B:GLN121 3.9 14.5 1.0
CD1 B:ILE124 4.1 14.1 1.0
N B:LEU25 4.1 8.1 1.0
CG2 B:VAL120 4.2 13.0 1.0
C B:SER24 4.2 8.6 1.0
CG B:GLN121 4.2 16.4 1.0
C B:VAL120 4.2 12.9 1.0
O B:VAL120 4.3 12.3 1.0
O2 B:GOL206 4.3 33.4 1.0
C B:LEU25 4.3 7.9 1.0
CG1 B:ILE124 4.4 13.6 1.0
C3 B:GOL206 4.5 36.1 1.0
CA B:SER24 4.5 8.9 1.0
O B:SER24 4.6 8.4 1.0
C B:GLY26 4.6 7.5 1.0
CA B:LEU25 4.7 8.1 1.0
N B:ASN27 4.7 7.4 1.0
C1 B:GOL206 4.8 36.5 1.0
C2 B:GOL206 4.8 35.7 1.0
C B:GLN121 4.9 12.6 1.0
CB B:LEU25 4.9 7.9 1.0
CB B:VAL120 5.0 13.0 1.0

Reference:

R.E.Mcgovern, B.D.Snarr, J.A.Lyons, J.Mcfarlane, A.L.Whiting, I.Paci, F.Hof, P.B.Crowley. Structural Study of A Small Molecule Receptor Bound to Dimethyllysine in Lysozyme Chem.Sci. 2015.
DOI: 10.1039/C4SC02383H
Page generated: Sun Jul 21 20:25:01 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy