Chlorine in PDB 4n2o: Structure of A Novel Autonomous Cohesin Protein From Ruminococcus Flavefaciens
Protein crystallography data
The structure of Structure of A Novel Autonomous Cohesin Protein From Ruminococcus Flavefaciens, PDB code: 4n2o
was solved by
F.Frolow,
M.Voronov-Goldman,
M.Levy-Assaraf,
R.Lamed,
E.Bayer,
L.Shimon,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
22.77 /
2.44
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
116.240,
67.726,
258.907,
90.00,
93.08,
90.00
|
R / Rfree (%)
|
20.5 /
22.9
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structure of A Novel Autonomous Cohesin Protein From Ruminococcus Flavefaciens
(pdb code 4n2o). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Structure of A Novel Autonomous Cohesin Protein From Ruminococcus Flavefaciens, PDB code: 4n2o:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 4n2o
Go back to
Chlorine Binding Sites List in 4n2o
Chlorine binding site 1 out
of 4 in the Structure of A Novel Autonomous Cohesin Protein From Ruminococcus Flavefaciens
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of A Novel Autonomous Cohesin Protein From Ruminococcus Flavefaciens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl301
b:53.7
occ:1.00
|
O
|
A:HOH446
|
2.5
|
31.4
|
1.0
|
O
|
A:ASN157
|
2.9
|
27.2
|
1.0
|
NZ
|
A:LYS120
|
3.0
|
34.9
|
1.0
|
CE
|
A:LYS120
|
3.3
|
31.6
|
1.0
|
CD
|
A:LYS120
|
3.4
|
29.7
|
1.0
|
CA
|
A:TYR72
|
3.7
|
27.4
|
1.0
|
C
|
A:ASN157
|
3.8
|
27.0
|
1.0
|
N
|
A:TYR72
|
3.9
|
27.0
|
1.0
|
C
|
A:TYR72
|
3.9
|
30.6
|
1.0
|
CD
|
A:PRO73
|
4.0
|
32.2
|
1.0
|
N
|
A:PRO73
|
4.0
|
32.5
|
1.0
|
O
|
A:ILE71
|
4.1
|
26.8
|
1.0
|
C
|
A:ILE71
|
4.2
|
26.4
|
1.0
|
CB
|
A:ASN157
|
4.2
|
28.0
|
1.0
|
CG1
|
A:ILE71
|
4.3
|
30.2
|
1.0
|
CD1
|
A:ILE71
|
4.3
|
31.1
|
1.0
|
N
|
A:LEU158
|
4.5
|
26.9
|
1.0
|
O
|
A:TYR72
|
4.5
|
26.7
|
1.0
|
CA
|
A:ASN157
|
4.5
|
26.5
|
1.0
|
CG
|
A:PRO73
|
4.6
|
37.1
|
1.0
|
N
|
A:GLY159
|
4.6
|
28.3
|
1.0
|
CA
|
A:LEU158
|
4.6
|
26.1
|
1.0
|
CG
|
A:LYS120
|
4.6
|
27.8
|
1.0
|
CB
|
A:ILE71
|
4.9
|
28.2
|
1.0
|
C
|
A:LEU158
|
4.9
|
25.0
|
1.0
|
CA
|
A:PRO73
|
5.0
|
33.1
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 4n2o
Go back to
Chlorine Binding Sites List in 4n2o
Chlorine binding site 2 out
of 4 in the Structure of A Novel Autonomous Cohesin Protein From Ruminococcus Flavefaciens
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of A Novel Autonomous Cohesin Protein From Ruminococcus Flavefaciens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl302
b:57.0
occ:1.00
|
O
|
A:THR141
|
3.7
|
25.4
|
1.0
|
NH1
|
A:ARG143
|
3.9
|
44.5
|
1.0
|
CA
|
A:PHE90
|
4.1
|
28.7
|
1.0
|
CZ
|
A:ARG143
|
4.1
|
43.3
|
1.0
|
CG
|
A:ARG143
|
4.1
|
27.9
|
1.0
|
OE1
|
A:GLU79
|
4.1
|
26.8
|
1.0
|
O
|
A:ALA89
|
4.2
|
27.3
|
1.0
|
N
|
A:GLN91
|
4.2
|
31.4
|
1.0
|
N
|
A:PHE90
|
4.2
|
29.5
|
1.0
|
C
|
A:PHE90
|
4.3
|
27.7
|
1.0
|
C
|
A:ALA89
|
4.3
|
28.8
|
1.0
|
NE
|
A:ARG143
|
4.4
|
38.2
|
1.0
|
C
|
A:PHE142
|
4.4
|
28.3
|
1.0
|
CA
|
A:PHE142
|
4.4
|
28.0
|
1.0
|
N
|
A:ARG143
|
4.5
|
26.4
|
1.0
|
C
|
A:THR141
|
4.5
|
27.1
|
1.0
|
CD
|
A:ARG143
|
4.6
|
31.8
|
1.0
|
NH2
|
A:ARG143
|
4.6
|
44.9
|
1.0
|
CB
|
A:ALA89
|
4.7
|
29.4
|
1.0
|
CB
|
A:ARG143
|
4.7
|
24.8
|
1.0
|
CB
|
A:GLN91
|
4.8
|
38.7
|
1.0
|
O
|
A:HOH402
|
4.8
|
17.3
|
1.0
|
CD
|
A:GLU79
|
4.8
|
26.1
|
1.0
|
O
|
A:PHE142
|
4.9
|
27.8
|
1.0
|
N
|
A:PHE142
|
4.9
|
27.1
|
1.0
|
O
|
A:PHE90
|
4.9
|
25.4
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 4n2o
Go back to
Chlorine Binding Sites List in 4n2o
Chlorine binding site 3 out
of 4 in the Structure of A Novel Autonomous Cohesin Protein From Ruminococcus Flavefaciens
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Structure of A Novel Autonomous Cohesin Protein From Ruminococcus Flavefaciens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl301
b:71.1
occ:1.00
|
CE1
|
B:PHE24
|
3.4
|
30.3
|
1.0
|
CD1
|
B:PHE24
|
3.6
|
31.8
|
1.0
|
O
|
B:HOH402
|
3.8
|
41.4
|
1.0
|
NE
|
A:ARG86
|
3.9
|
51.5
|
1.0
|
O
|
B:ALA23
|
4.2
|
41.4
|
1.0
|
NH2
|
A:ARG86
|
4.3
|
74.4
|
1.0
|
O
|
A:GLU84
|
4.3
|
40.4
|
1.0
|
CZ
|
B:PHE24
|
4.3
|
31.6
|
1.0
|
OE1
|
A:GLU85
|
4.4
|
40.2
|
1.0
|
OH
|
B:TYR162
|
4.5
|
31.6
|
1.0
|
CZ
|
A:ARG86
|
4.6
|
55.5
|
1.0
|
CG2
|
B:VAL27
|
4.6
|
39.2
|
1.0
|
CG
|
B:PHE24
|
4.6
|
32.9
|
1.0
|
CD
|
A:ARG86
|
4.8
|
40.3
|
1.0
|
C
|
B:ALA23
|
4.9
|
36.5
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 4n2o
Go back to
Chlorine Binding Sites List in 4n2o
Chlorine binding site 4 out
of 4 in the Structure of A Novel Autonomous Cohesin Protein From Ruminococcus Flavefaciens
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Structure of A Novel Autonomous Cohesin Protein From Ruminococcus Flavefaciens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cl301
b:78.7
occ:1.00
|
O
|
H:HOH436
|
2.4
|
47.2
|
1.0
|
O
|
H:HOH430
|
2.4
|
41.9
|
1.0
|
O
|
H:THR141
|
2.9
|
31.4
|
1.0
|
O
|
H:HOH446
|
3.1
|
46.9
|
1.0
|
C
|
H:THR141
|
3.6
|
31.5
|
1.0
|
C
|
H:PHE142
|
3.8
|
32.3
|
1.0
|
CA
|
H:PHE142
|
3.9
|
30.4
|
1.0
|
CG
|
H:ARG143
|
3.9
|
47.4
|
1.0
|
N
|
H:GLN91
|
3.9
|
39.3
|
1.0
|
CG2
|
H:THR141
|
4.0
|
33.3
|
1.0
|
N
|
H:PHE142
|
4.0
|
33.3
|
1.0
|
O
|
H:PHE142
|
4.0
|
31.3
|
1.0
|
CB
|
H:GLN91
|
4.2
|
42.0
|
1.0
|
CZ
|
H:ARG143
|
4.2
|
62.6
|
1.0
|
N
|
H:ARG143
|
4.3
|
34.7
|
1.0
|
NE
|
H:ARG143
|
4.3
|
61.9
|
1.0
|
CA
|
H:PHE90
|
4.3
|
31.1
|
1.0
|
CB
|
H:THR141
|
4.3
|
32.0
|
1.0
|
C
|
H:PHE90
|
4.4
|
34.3
|
1.0
|
NH1
|
H:ARG143
|
4.4
|
63.8
|
1.0
|
NH2
|
H:ARG143
|
4.5
|
72.2
|
1.0
|
CA
|
H:THR141
|
4.6
|
30.5
|
1.0
|
CD
|
H:ARG143
|
4.6
|
49.8
|
1.0
|
CA
|
H:GLN91
|
4.7
|
38.0
|
1.0
|
CB
|
H:ARG143
|
4.7
|
40.5
|
1.0
|
O
|
H:ALA89
|
4.8
|
32.8
|
1.0
|
O
|
H:HOH435
|
4.9
|
44.5
|
1.0
|
N
|
H:PHE90
|
4.9
|
32.0
|
1.0
|
|
Reference:
M.Voronov-Goldman,
M.Levy-Assaraf,
O.Yaniv,
G.Wisserman,
S.Jindou,
I.Borovok,
E.A.Bayer,
R.Lamed,
L.J.Shimon,
F.Frolow.
Structural Characterization of A Novel Autonomous Cohesin From Ruminococcus Flavefaciens. Acta Crystallogr F Struct V. 70 450 2014BIOL Commun.
ISSN: ISSN 1744-3091
PubMed: 24699736
DOI: 10.1107/S2053230X14004051
Page generated: Sun Jul 21 20:26:51 2024
|