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Chlorine in PDB 4ngy: Dialyzed Hew Lysozyme Batch Crystallized in 0.75 M YBCL3 and Collected at 100 K

Enzymatic activity of Dialyzed Hew Lysozyme Batch Crystallized in 0.75 M YBCL3 and Collected at 100 K

All present enzymatic activity of Dialyzed Hew Lysozyme Batch Crystallized in 0.75 M YBCL3 and Collected at 100 K:
3.2.1.17;

Protein crystallography data

The structure of Dialyzed Hew Lysozyme Batch Crystallized in 0.75 M YBCL3 and Collected at 100 K, PDB code: 4ngy was solved by P.Benas, L.Legrand, M.Ries-Kautt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.63 / 1.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.666, 78.666, 37.151, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 21.6

Other elements in 4ngy:

The structure of Dialyzed Hew Lysozyme Batch Crystallized in 0.75 M YBCL3 and Collected at 100 K also contains other interesting chemical elements:

Ytterbium (Yb) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dialyzed Hew Lysozyme Batch Crystallized in 0.75 M YBCL3 and Collected at 100 K (pdb code 4ngy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Dialyzed Hew Lysozyme Batch Crystallized in 0.75 M YBCL3 and Collected at 100 K, PDB code: 4ngy:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4ngy

Go back to Chlorine Binding Sites List in 4ngy
Chlorine binding site 1 out of 2 in the Dialyzed Hew Lysozyme Batch Crystallized in 0.75 M YBCL3 and Collected at 100 K


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dialyzed Hew Lysozyme Batch Crystallized in 0.75 M YBCL3 and Collected at 100 K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:17.3
occ:1.00
OH A:TYR23 3.0 14.3 1.0
O A:HOH311 3.2 24.9 1.0
CE2 A:TYR23 3.7 13.5 1.0
CZ A:TYR23 3.7 13.6 1.0
CA A:GLY104 4.2 14.0 1.0
O A:ARG21 4.6 18.2 1.0
N A:GLY104 4.7 14.6 1.0
CE1 A:TYR23 4.9 13.8 1.0
CD2 A:TYR23 4.9 13.4 1.0
O A:HOH445 5.0 31.8 1.0

Chlorine binding site 2 out of 2 in 4ngy

Go back to Chlorine Binding Sites List in 4ngy
Chlorine binding site 2 out of 2 in the Dialyzed Hew Lysozyme Batch Crystallized in 0.75 M YBCL3 and Collected at 100 K


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Dialyzed Hew Lysozyme Batch Crystallized in 0.75 M YBCL3 and Collected at 100 K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:23.3
occ:1.00
OG A:SER24 3.1 20.2 1.0
N A:GLY26 3.2 14.2 1.0
CA A:GLY26 3.5 15.5 1.0
CB A:SER24 3.5 18.6 1.0
CA A:GLN121 3.7 20.8 1.0
CD1 A:ILE124 3.8 30.6 1.0
N A:GLN121 3.9 18.3 1.0
CG A:GLN121 4.1 35.1 1.0
CB A:GLN121 4.2 26.9 1.0
O A:VAL120 4.2 17.6 1.0
C A:VAL120 4.2 17.6 1.0
CG1 A:ILE124 4.2 24.2 1.0
CG2 A:VAL120 4.3 21.2 1.0
N A:LEU25 4.3 17.6 1.0
C A:LEU25 4.4 15.0 1.0
C A:SER24 4.4 16.9 1.0
C A:GLY26 4.6 14.2 1.0
CA A:SER24 4.6 17.4 1.0
N A:ASN27 4.7 13.9 1.0
CA A:LEU25 4.8 16.4 1.0
C A:GLN121 4.8 19.6 1.0
NE2 A:GLN121 4.9 51.5 1.0
O A:SER24 4.9 15.8 1.0
CD A:GLN121 4.9 45.2 1.0
CB A:VAL120 5.0 17.6 1.0

Reference:

P.Benas, N.Auzeil, L.Legrand, F.Brachet, A.Regazzetti, M.Ries-Kautt. Weak Protein-Cationic Co-Ion Interactions Addressed By X-Ray Crystallography and Mass Spectrometry. Acta Crystallogr.,Sect.D V. 70 2217 2014.
ISSN: ISSN 0907-4449
PubMed: 25084340
DOI: 10.1107/S1399004714011304
Page generated: Sat Dec 12 10:58:45 2020

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