Atomistry » Chlorine » PDB 4ngs-4ntd » 4noi
Atomistry »
  Chlorine »
    PDB 4ngs-4ntd »
      4noi »

Chlorine in PDB 4noi: 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.

Enzymatic activity of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.

All present enzymatic activity of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.:
2.7.7.6;

Protein crystallography data

The structure of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni., PDB code: 4noi was solved by G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, S.Grimshaw, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.49 / 2.17
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 99.173, 62.743, 93.621, 90.00, 112.52, 90.00
R / Rfree (%) 17.4 / 22.5

Other elements in 4noi:

The structure of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. also contains other interesting chemical elements:

Iodine (I) 4 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Chlorine atom in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. (pdb code 4noi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 14 binding sites of Chlorine where determined in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni., PDB code: 4noi:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 14 in 4noi

Go back to Chlorine Binding Sites List in 4noi
Chlorine binding site 1 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:67.0
occ:1.00
 NH2 B:ARG45 3.8 51.7 1.0
CA A:GLY34 4.0 38.0 1.0
N A:GLY34 4.3 37.2 1.0
CG1 A:ILE33 4.5 54.5 1.0
CG2 A:ILE37 4.6 54.0 1.0
OE2 A:GLU195 4.7 50.0 1.0
CZ B:ARG45 4.9 52.5 1.0
O B:HOH574 4.9 49.3 1.0
NH1 B:ARG45 5.0 55.4 1.0

Chlorine binding site 2 out of 14 in 4noi

Go back to Chlorine Binding Sites List in 4noi
Chlorine binding site 2 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:55.7
occ:1.00
 N A:TYR181 3.7 41.3 1.0
NE A:ARG44 3.9 63.8 1.0
CA A:THR180 3.9 47.8 1.0
CB A:THR180 4.0 52.0 1.0
O A:TYR181 4.0 43.6 1.0
CD2 A:TYR181 4.1 47.5 1.0
CD A:ARG44 4.1 57.9 1.0
CE2 A:TYR181 4.1 46.2 1.0
CZ A:ARG44 4.2 79.4 1.0
CG2 A:THR180 4.2 53.1 1.0
C A:THR180 4.3 46.4 1.0
CG A:TYR181 4.5 45.7 1.0
NH1 A:ARG44 4.5 87.2 1.0
CZ A:TYR181 4.6 50.9 1.0
CA A:TYR181 4.7 42.2 1.0
NH2 A:ARG44 4.7 85.5 1.0
C A:TYR181 4.8 42.1 1.0
O A:ALA179 4.8 46.0 1.0
CD1 A:TYR181 4.9 49.5 1.0
CE1 A:TYR181 5.0 47.1 1.0

Chlorine binding site 3 out of 14 in 4noi

Go back to Chlorine Binding Sites List in 4noi
Chlorine binding site 3 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl407

b:53.0
occ:1.00
 O A:HOH549 3.1 32.9 0.6
N A:LEU187 3.3 44.5 1.0
CB A:VAL186 3.9 40.9 1.0
CA A:VAL186 3.9 41.6 1.0
CB A:LEU187 4.0 48.1 1.0
O A:LEU187 4.1 51.7 1.0
C A:VAL186 4.1 43.9 1.0
CA A:LEU187 4.1 48.1 1.0
CG A:LEU187 4.2 50.6 1.0
CG1 A:VAL186 4.3 43.0 1.0
C A:LEU187 4.6 49.7 1.0
O A:HOH549 4.7 20.9 0.4
CD1 A:LEU187 4.9 53.6 1.0

Chlorine binding site 4 out of 14 in 4noi

Go back to Chlorine Binding Sites List in 4noi
Chlorine binding site 4 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl408

b:58.9
occ:1.00
 OE2 A:GLU110 3.3 81.0 1.0
OG A:SER108 3.4 82.7 1.0
CG A:GLU110 3.5 61.0 1.0
O A:HOH581 3.7 31.8 0.5
CD A:GLU110 3.8 78.3 1.0
N A:LYS109 4.3 54.4 1.0
CG2 A:THR132 4.5 44.1 1.0
N A:GLU110 4.5 51.6 1.0
C A:LYS109 4.6 52.5 1.0
CB A:GLU110 4.7 55.0 1.0
CA A:LYS109 4.7 54.8 1.0
CB A:SER108 4.8 66.9 1.0
C A:SER108 4.9 60.6 1.0

Chlorine binding site 5 out of 14 in 4noi

Go back to Chlorine Binding Sites List in 4noi
Chlorine binding site 5 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl409

b:62.6
occ:1.00
 CD1 A:PHE105 4.0 51.5 1.0
CA A:PHE105 4.1 55.2 1.0
N A:LYS106 4.1 61.1 1.0
CE A:LYS109 4.3 67.3 1.0
CB A:PHE105 4.5 51.9 1.0
O A:SER104 4.5 57.7 1.0
C A:PHE105 4.7 56.7 1.0
CG A:PHE105 4.7 48.8 1.0
O A:LYS106 4.7 58.6 1.0
CD A:LYS109 4.8 62.1 1.0
NZ A:LYS109 4.8 72.8 1.0
CE1 A:PHE105 4.9 52.0 1.0

Chlorine binding site 6 out of 14 in 4noi

Go back to Chlorine Binding Sites List in 4noi
Chlorine binding site 6 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl410

b:35.7
occ:0.60
 CL A:CL410 0.0 35.7 0.6
CL A:CL410 1.8 37.7 0.4
O A:HOH581 3.3 31.8 0.5
CB A:ASN134 3.8 59.7 1.0
CG2 A:THR132 4.0 44.1 1.0
N A:ASN134 4.2 48.7 1.0
CA A:ASN134 4.2 55.1 1.0
CB A:LEU75 4.4 44.6 1.0
C A:ILE133 4.5 48.8 1.0
O A:HOH595 4.7 58.2 1.0
CG A:ASN134 4.7 66.4 1.0
O A:ILE133 4.8 45.9 1.0
O A:THR132 4.8 42.3 1.0
N A:LEU75 4.9 39.2 1.0
ND2 A:ASN134 4.9 74.0 1.0
CB A:THR132 5.0 42.9 1.0
CA A:LEU75 5.0 44.5 1.0

Chlorine binding site 7 out of 14 in 4noi

Go back to Chlorine Binding Sites List in 4noi
Chlorine binding site 7 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl410

b:37.7
occ:0.40
 CL A:CL410 0.0 37.7 0.4
CL A:CL410 1.8 35.7 0.6
N A:LEU75 3.6 39.2 1.0
O A:GLY73 3.8 60.0 1.0
CB A:ASN134 3.8 59.7 1.0
CA A:LEU75 3.9 44.5 1.0
CB A:LEU75 3.9 44.6 1.0
N A:ASN134 3.9 48.7 1.0
C A:MSE74 4.1 38.1 1.0
C A:GLY73 4.1 55.2 1.0
CG A:ASN134 4.2 66.4 1.0
ND2 A:ASN134 4.2 74.0 1.0
O A:THR132 4.3 42.3 1.0
CA A:ASN134 4.4 55.1 1.0
C A:ILE133 4.5 48.8 1.0
CA A:MSE74 4.5 44.2 1.0
N A:MSE74 4.5 48.2 1.0
O A:HOH581 4.7 31.8 0.5
O A:MSE74 4.7 40.6 1.0
CA A:ILE133 4.7 46.0 1.0
O A:HOH527 4.8 47.7 1.0
CG2 A:THR132 4.9 44.1 1.0
CA A:GLY73 4.9 53.5 1.0
C A:THR132 4.9 40.1 1.0
OD1 A:ASN134 4.9 71.0 1.0

Chlorine binding site 8 out of 14 in 4noi

Go back to Chlorine Binding Sites List in 4noi
Chlorine binding site 8 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl411

b:55.1
occ:0.50
 CL A:CL411 0.0 55.1 0.5
CL A:CL411 2.1 63.9 0.5
N A:ILE16 3.2 48.5 1.0
CG2 A:ILE16 3.3 65.6 1.0
CA A:THR15 3.7 47.0 1.0
O A:ILE16 3.7 58.9 1.0
C A:THR15 3.9 49.9 1.0
CA A:ILE16 4.1 56.1 1.0
CB A:THR15 4.3 51.2 1.0
CB A:ILE16 4.3 63.0 1.0
O A:PHE14 4.3 51.5 1.0
C A:ILE16 4.4 55.8 1.0
CG2 A:THR15 4.6 51.4 1.0
N A:THR15 4.8 44.8 1.0
C A:PHE14 5.0 47.1 1.0

Chlorine binding site 9 out of 14 in 4noi

Go back to Chlorine Binding Sites List in 4noi
Chlorine binding site 9 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl411

b:63.9
occ:0.50
 CL A:CL411 0.0 63.9 0.5
CL A:CL411 2.1 55.1 0.5
CG2 A:ILE16 3.5 65.6 1.0
CD1 A:PHE14 4.2 55.2 1.0
CE1 A:PHE14 4.2 50.8 1.0
O A:PHE14 4.4 51.5 1.0
N A:ILE16 4.4 48.5 1.0
O B:LYS229 4.5 89.8 1.0
CA A:THR15 4.7 47.0 1.0
CB A:ILE16 4.8 63.0 1.0
C A:THR15 4.9 49.9 1.0

Chlorine binding site 10 out of 14 in 4noi

Go back to Chlorine Binding Sites List in 4noi
Chlorine binding site 10 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:51.9
occ:1.00
 NE B:ARG44 3.4 38.5 1.0
N B:TYR181 3.7 43.1 1.0
CD B:ARG44 3.8 37.6 1.0
CA B:THR180 3.9 35.8 1.0
CD2 B:TYR181 3.9 49.0 1.0
CE2 B:TYR181 3.9 52.1 1.0
CZ B:ARG44 3.9 41.1 1.0
CB B:THR180 4.0 38.3 1.0
O B:TYR181 4.0 44.9 1.0
NH2 B:ARG44 4.3 42.5 1.0
C B:THR180 4.3 39.6 1.0
CG2 B:THR180 4.4 39.9 1.0
CG B:TYR181 4.4 47.1 1.0
CZ B:TYR181 4.5 61.9 1.0
NH1 B:ARG44 4.6 38.8 1.0
CA B:TYR181 4.7 43.9 1.0
O B:ALA179 4.7 35.4 1.0
C B:TYR181 4.8 45.3 1.0
CD1 B:TYR181 5.0 53.1 1.0

Reference:

G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, S.Grimshaw, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. To Be Published.
Page generated: Thu Jul 25 22:57:39 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy