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Chlorine in PDB 4noi: 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.

Enzymatic activity of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.

All present enzymatic activity of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.:
2.7.7.6;

Protein crystallography data

The structure of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni., PDB code: 4noi was solved by G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, S.Grimshaw, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.49 / 2.17
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 99.173, 62.743, 93.621, 90.00, 112.52, 90.00
R / Rfree (%) 17.4 / 22.5

Other elements in 4noi:

The structure of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. also contains other interesting chemical elements:

Iodine (I) 4 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Chlorine atom in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. (pdb code 4noi). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 14 binding sites of Chlorine where determined in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni., PDB code: 4noi:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 14 in 4noi

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Chlorine binding site 1 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:67.0
occ:1.00
 NH2 B:ARG45 3.8 51.7 1.0
CA A:GLY34 4.0 38.0 1.0
N A:GLY34 4.3 37.2 1.0
CG1 A:ILE33 4.5 54.5 1.0
CG2 A:ILE37 4.6 54.0 1.0
OE2 A:GLU195 4.7 50.0 1.0
CZ B:ARG45 4.9 52.5 1.0
O B:HOH574 4.9 49.3 1.0
NH1 B:ARG45 5.0 55.4 1.0

Chlorine binding site 2 out of 14 in 4noi

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Chlorine binding site 2 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:55.7
occ:1.00
 N A:TYR181 3.7 41.3 1.0
NE A:ARG44 3.9 63.8 1.0
CA A:THR180 3.9 47.8 1.0
CB A:THR180 4.0 52.0 1.0
O A:TYR181 4.0 43.6 1.0
CD2 A:TYR181 4.1 47.5 1.0
CD A:ARG44 4.1 57.9 1.0
CE2 A:TYR181 4.1 46.2 1.0
CZ A:ARG44 4.2 79.4 1.0
CG2 A:THR180 4.2 53.1 1.0
C A:THR180 4.3 46.4 1.0
CG A:TYR181 4.5 45.7 1.0
NH1 A:ARG44 4.5 87.2 1.0
CZ A:TYR181 4.6 50.9 1.0
CA A:TYR181 4.7 42.2 1.0
NH2 A:ARG44 4.7 85.5 1.0
C A:TYR181 4.8 42.1 1.0
O A:ALA179 4.8 46.0 1.0
CD1 A:TYR181 4.9 49.5 1.0
CE1 A:TYR181 5.0 47.1 1.0

Chlorine binding site 3 out of 14 in 4noi

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Chlorine binding site 3 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl407

b:53.0
occ:1.00
 O A:HOH549 3.1 32.9 0.6
N A:LEU187 3.3 44.5 1.0
CB A:VAL186 3.9 40.9 1.0
CA A:VAL186 3.9 41.6 1.0
CB A:LEU187 4.0 48.1 1.0
O A:LEU187 4.1 51.7 1.0
C A:VAL186 4.1 43.9 1.0
CA A:LEU187 4.1 48.1 1.0
CG A:LEU187 4.2 50.6 1.0
CG1 A:VAL186 4.3 43.0 1.0
C A:LEU187 4.6 49.7 1.0
O A:HOH549 4.7 20.9 0.4
CD1 A:LEU187 4.9 53.6 1.0

Chlorine binding site 4 out of 14 in 4noi

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Chlorine binding site 4 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl408

b:58.9
occ:1.00
 OE2 A:GLU110 3.3 81.0 1.0
OG A:SER108 3.4 82.7 1.0
CG A:GLU110 3.5 61.0 1.0
O A:HOH581 3.7 31.8 0.5
CD A:GLU110 3.8 78.3 1.0
N A:LYS109 4.3 54.4 1.0
CG2 A:THR132 4.5 44.1 1.0
N A:GLU110 4.5 51.6 1.0
C A:LYS109 4.6 52.5 1.0
CB A:GLU110 4.7 55.0 1.0
CA A:LYS109 4.7 54.8 1.0
CB A:SER108 4.8 66.9 1.0
C A:SER108 4.9 60.6 1.0

Chlorine binding site 5 out of 14 in 4noi

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Chlorine binding site 5 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl409

b:62.6
occ:1.00
 CD1 A:PHE105 4.0 51.5 1.0
CA A:PHE105 4.1 55.2 1.0
N A:LYS106 4.1 61.1 1.0
CE A:LYS109 4.3 67.3 1.0
CB A:PHE105 4.5 51.9 1.0
O A:SER104 4.5 57.7 1.0
C A:PHE105 4.7 56.7 1.0
CG A:PHE105 4.7 48.8 1.0
O A:LYS106 4.7 58.6 1.0
CD A:LYS109 4.8 62.1 1.0
NZ A:LYS109 4.8 72.8 1.0
CE1 A:PHE105 4.9 52.0 1.0

Chlorine binding site 6 out of 14 in 4noi

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Chlorine binding site 6 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl410

b:35.7
occ:0.60
 CL A:CL410 0.0 35.7 0.6
CL A:CL410 1.8 37.7 0.4
O A:HOH581 3.3 31.8 0.5
CB A:ASN134 3.8 59.7 1.0
CG2 A:THR132 4.0 44.1 1.0
N A:ASN134 4.2 48.7 1.0
CA A:ASN134 4.2 55.1 1.0
CB A:LEU75 4.4 44.6 1.0
C A:ILE133 4.5 48.8 1.0
O A:HOH595 4.7 58.2 1.0
CG A:ASN134 4.7 66.4 1.0
O A:ILE133 4.8 45.9 1.0
O A:THR132 4.8 42.3 1.0
N A:LEU75 4.9 39.2 1.0
ND2 A:ASN134 4.9 74.0 1.0
CB A:THR132 5.0 42.9 1.0
CA A:LEU75 5.0 44.5 1.0

Chlorine binding site 7 out of 14 in 4noi

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Chlorine binding site 7 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl410

b:37.7
occ:0.40
 CL A:CL410 0.0 37.7 0.4
CL A:CL410 1.8 35.7 0.6
N A:LEU75 3.6 39.2 1.0
O A:GLY73 3.8 60.0 1.0
CB A:ASN134 3.8 59.7 1.0
CA A:LEU75 3.9 44.5 1.0
CB A:LEU75 3.9 44.6 1.0
N A:ASN134 3.9 48.7 1.0
C A:MSE74 4.1 38.1 1.0
C A:GLY73 4.1 55.2 1.0
CG A:ASN134 4.2 66.4 1.0
ND2 A:ASN134 4.2 74.0 1.0
O A:THR132 4.3 42.3 1.0
CA A:ASN134 4.4 55.1 1.0
C A:ILE133 4.5 48.8 1.0
CA A:MSE74 4.5 44.2 1.0
N A:MSE74 4.5 48.2 1.0
O A:HOH581 4.7 31.8 0.5
O A:MSE74 4.7 40.6 1.0
CA A:ILE133 4.7 46.0 1.0
O A:HOH527 4.8 47.7 1.0
CG2 A:THR132 4.9 44.1 1.0
CA A:GLY73 4.9 53.5 1.0
C A:THR132 4.9 40.1 1.0
OD1 A:ASN134 4.9 71.0 1.0

Chlorine binding site 8 out of 14 in 4noi

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Chlorine binding site 8 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl411

b:55.1
occ:0.50
 CL A:CL411 0.0 55.1 0.5
CL A:CL411 2.1 63.9 0.5
N A:ILE16 3.2 48.5 1.0
CG2 A:ILE16 3.3 65.6 1.0
CA A:THR15 3.7 47.0 1.0
O A:ILE16 3.7 58.9 1.0
C A:THR15 3.9 49.9 1.0
CA A:ILE16 4.1 56.1 1.0
CB A:THR15 4.3 51.2 1.0
CB A:ILE16 4.3 63.0 1.0
O A:PHE14 4.3 51.5 1.0
C A:ILE16 4.4 55.8 1.0
CG2 A:THR15 4.6 51.4 1.0
N A:THR15 4.8 44.8 1.0
C A:PHE14 5.0 47.1 1.0

Chlorine binding site 9 out of 14 in 4noi

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Chlorine binding site 9 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl411

b:63.9
occ:0.50
 CL A:CL411 0.0 63.9 0.5
CL A:CL411 2.1 55.1 0.5
CG2 A:ILE16 3.5 65.6 1.0
CD1 A:PHE14 4.2 55.2 1.0
CE1 A:PHE14 4.2 50.8 1.0
O A:PHE14 4.4 51.5 1.0
N A:ILE16 4.4 48.5 1.0
O B:LYS229 4.5 89.8 1.0
CA A:THR15 4.7 47.0 1.0
CB A:ILE16 4.8 63.0 1.0
C A:THR15 4.9 49.9 1.0

Chlorine binding site 10 out of 14 in 4noi

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Chlorine binding site 10 out of 14 in the 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:51.9
occ:1.00
 NE B:ARG44 3.4 38.5 1.0
N B:TYR181 3.7 43.1 1.0
CD B:ARG44 3.8 37.6 1.0
CA B:THR180 3.9 35.8 1.0
CD2 B:TYR181 3.9 49.0 1.0
CE2 B:TYR181 3.9 52.1 1.0
CZ B:ARG44 3.9 41.1 1.0
CB B:THR180 4.0 38.3 1.0
O B:TYR181 4.0 44.9 1.0
NH2 B:ARG44 4.3 42.5 1.0
C B:THR180 4.3 39.6 1.0
CG2 B:THR180 4.4 39.9 1.0
CG B:TYR181 4.4 47.1 1.0
CZ B:TYR181 4.5 61.9 1.0
NH1 B:ARG44 4.6 38.8 1.0
CA B:TYR181 4.7 43.9 1.0
O B:ALA179 4.7 35.4 1.0
C B:TYR181 4.8 45.3 1.0
CD1 B:TYR181 5.0 53.1 1.0

Reference:

G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, S.Grimshaw, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.17 Angstrom Crystal Structure of Dna-Directed Rna Polymerase Subunit Alpha From Campylobacter Jejuni. To Be Published.
Page generated: Thu Jul 25 22:57:39 2024

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