Chlorine in PDB 4o0a: Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions
Protein crystallography data
The structure of Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions, PDB code: 4o0a
was solved by
M.D.Feldkamp,
A.O.Frank,
J.P.Kennedy,
A.G.Waterson,
E.T.Olejniczak,
N.F.Pelz,
J.D.Patrone,
B.Vangamudi,
D.V.Camper,
O.W.Rossanese,
S.W.Fesik,
W.J.Chazin,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.95 /
1.20
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
37.912,
53.582,
53.932,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.4 /
17.6
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions
(pdb code 4o0a). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions, PDB code: 4o0a:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 4o0a
Go back to
Chlorine Binding Sites List in 4o0a
Chlorine binding site 1 out
of 6 in the Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:9.3
occ:0.51
|
CL2
|
A:2P9201
|
0.0
|
9.3
|
0.5
|
CL2
|
A:2P9201
|
0.5
|
14.6
|
0.5
|
C08
|
A:2P9201
|
1.7
|
11.7
|
0.5
|
C08
|
A:2P9201
|
1.8
|
11.7
|
0.5
|
HA
|
A:SER55
|
2.6
|
11.0
|
0.4
|
C07
|
A:2P9201
|
2.7
|
11.3
|
0.5
|
C07
|
A:2P9201
|
2.7
|
11.4
|
0.5
|
C10
|
A:2P9201
|
2.8
|
10.8
|
0.5
|
C10
|
A:2P9201
|
2.8
|
11.7
|
0.5
|
HA
|
A:SER55
|
2.9
|
10.6
|
0.6
|
HG3
|
A:MET57
|
2.9
|
11.7
|
1.0
|
HG13
|
A:VAL93
|
3.1
|
15.8
|
0.8
|
HG13
|
A:VAL93
|
3.1
|
15.4
|
0.2
|
HE2
|
A:MET57
|
3.1
|
15.6
|
1.0
|
CL
|
A:2P9201
|
3.2
|
11.2
|
0.5
|
CL
|
A:2P9201
|
3.3
|
14.7
|
0.5
|
HG3
|
A:ARG43
|
3.3
|
11.0
|
1.0
|
C
|
A:SER55
|
3.5
|
8.4
|
0.6
|
CA
|
A:SER55
|
3.5
|
9.2
|
0.4
|
HE
|
A:ARG43
|
3.6
|
14.5
|
1.0
|
HG22
|
A:VAL93
|
3.6
|
15.9
|
0.8
|
HD2
|
A:ARG43
|
3.6
|
13.3
|
1.0
|
CA
|
A:SER55
|
3.6
|
8.8
|
0.6
|
NE
|
A:ARG43
|
3.6
|
12.1
|
1.0
|
HG22
|
A:VAL93
|
3.6
|
15.8
|
0.2
|
O
|
A:SER54
|
3.7
|
10.3
|
1.0
|
C
|
A:SER55
|
3.7
|
6.3
|
0.4
|
O
|
A:SER55
|
3.7
|
10.4
|
0.6
|
H
|
A:PHE56
|
3.7
|
9.6
|
0.4
|
N
|
A:PHE56
|
3.7
|
8.0
|
1.0
|
CG
|
A:MET57
|
3.8
|
9.8
|
1.0
|
H
|
A:PHE56
|
3.9
|
9.6
|
0.6
|
CG1
|
A:VAL93
|
3.9
|
13.2
|
0.8
|
HG11
|
A:VAL93
|
3.9
|
15.8
|
0.8
|
CG1
|
A:VAL93
|
3.9
|
12.8
|
0.2
|
HB2
|
A:SER55
|
3.9
|
13.8
|
0.4
|
HG11
|
A:VAL93
|
3.9
|
15.4
|
0.2
|
CD
|
A:ARG43
|
3.9
|
11.1
|
1.0
|
C06
|
A:2P9201
|
4.0
|
12.5
|
0.5
|
O
|
A:PHE56
|
4.0
|
7.9
|
1.0
|
C06
|
A:2P9201
|
4.0
|
11.2
|
0.5
|
CE
|
A:MET57
|
4.0
|
12.9
|
1.0
|
C12
|
A:2P9201
|
4.0
|
12.7
|
0.5
|
C12
|
A:2P9201
|
4.1
|
10.6
|
0.5
|
CG
|
A:ARG43
|
4.1
|
9.2
|
1.0
|
CZ
|
A:ARG43
|
4.1
|
13.5
|
1.0
|
C
|
A:PHE56
|
4.1
|
7.7
|
1.0
|
HG2
|
A:MET57
|
4.2
|
11.7
|
1.0
|
CB
|
A:SER55
|
4.3
|
11.5
|
0.4
|
SD
|
A:MET57
|
4.3
|
11.2
|
1.0
|
HH21
|
A:ARG43
|
4.3
|
17.2
|
1.0
|
CG2
|
A:VAL93
|
4.3
|
13.3
|
0.8
|
HG21
|
A:VAL93
|
4.3
|
15.9
|
0.8
|
HG21
|
A:VAL93
|
4.3
|
15.8
|
0.2
|
CG2
|
A:VAL93
|
4.3
|
13.1
|
0.2
|
O
|
A:SER55
|
4.4
|
5.6
|
0.4
|
HB3
|
A:SER55
|
4.4
|
12.7
|
0.6
|
NH2
|
A:ARG43
|
4.4
|
14.3
|
1.0
|
CA
|
A:PHE56
|
4.5
|
7.3
|
1.0
|
HE3
|
A:MET57
|
4.5
|
15.6
|
1.0
|
C13
|
A:2P9201
|
4.5
|
13.5
|
0.5
|
N
|
A:SER55
|
4.5
|
8.1
|
0.4
|
C
|
A:SER54
|
4.5
|
8.6
|
1.0
|
C13
|
A:2P9201
|
4.5
|
10.9
|
0.5
|
N
|
A:SER55
|
4.5
|
8.2
|
0.6
|
HG12
|
A:VAL93
|
4.6
|
15.8
|
0.8
|
HG12
|
A:VAL93
|
4.6
|
15.4
|
0.2
|
HE1
|
A:MET57
|
4.6
|
15.6
|
1.0
|
CB
|
A:SER55
|
4.6
|
10.5
|
0.6
|
HB3
|
A:SER55
|
4.6
|
13.8
|
0.4
|
HA
|
A:VAL93
|
4.6
|
10.9
|
0.8
|
N
|
A:MET57
|
4.7
|
7.5
|
1.0
|
HA
|
A:VAL93
|
4.7
|
11.1
|
0.2
|
HG2
|
A:ARG43
|
4.7
|
11.0
|
1.0
|
CB
|
A:VAL93
|
4.7
|
11.5
|
0.8
|
CB
|
A:VAL93
|
4.7
|
11.5
|
0.2
|
HG
|
A:SER55
|
4.7
|
12.8
|
0.6
|
HA
|
A:PHE56
|
4.7
|
8.8
|
1.0
|
HB2
|
A:ARG43
|
4.8
|
11.5
|
1.0
|
NH1
|
A:ARG43
|
4.8
|
13.1
|
1.0
|
HD3
|
A:ARG43
|
4.9
|
13.3
|
1.0
|
HB2
|
A:MET57
|
4.9
|
11.3
|
1.0
|
HH11
|
A:ARG43
|
4.9
|
15.8
|
1.0
|
CB
|
A:MET57
|
4.9
|
9.4
|
1.0
|
H
|
A:MET57
|
4.9
|
8.9
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 4o0a
Go back to
Chlorine Binding Sites List in 4o0a
Chlorine binding site 2 out
of 6 in the Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:14.6
occ:0.49
|
CL2
|
A:2P9201
|
0.0
|
14.6
|
0.5
|
CL2
|
A:2P9201
|
0.5
|
9.3
|
0.5
|
C08
|
A:2P9201
|
1.7
|
11.7
|
0.5
|
C08
|
A:2P9201
|
1.7
|
11.7
|
0.5
|
C10
|
A:2P9201
|
2.6
|
10.8
|
0.5
|
C07
|
A:2P9201
|
2.7
|
11.3
|
0.5
|
HA
|
A:SER55
|
2.7
|
11.0
|
0.4
|
C10
|
A:2P9201
|
2.7
|
11.7
|
0.5
|
C07
|
A:2P9201
|
2.7
|
11.4
|
0.5
|
HG13
|
A:VAL93
|
2.8
|
15.8
|
0.8
|
HG13
|
A:VAL93
|
2.8
|
15.4
|
0.2
|
HA
|
A:SER55
|
2.9
|
10.6
|
0.6
|
HE2
|
A:MET57
|
2.9
|
15.6
|
1.0
|
CL
|
A:2P9201
|
3.1
|
14.7
|
0.5
|
HG3
|
A:MET57
|
3.1
|
11.7
|
1.0
|
CL
|
A:2P9201
|
3.1
|
11.2
|
0.5
|
HG22
|
A:VAL93
|
3.1
|
15.9
|
0.8
|
HG22
|
A:VAL93
|
3.2
|
15.8
|
0.2
|
C
|
A:SER55
|
3.5
|
8.4
|
0.6
|
CA
|
A:SER55
|
3.5
|
9.2
|
0.4
|
CG1
|
A:VAL93
|
3.6
|
13.2
|
0.8
|
HG11
|
A:VAL93
|
3.6
|
15.8
|
0.8
|
CG1
|
A:VAL93
|
3.6
|
12.8
|
0.2
|
O
|
A:SER55
|
3.6
|
10.4
|
0.6
|
HG11
|
A:VAL93
|
3.6
|
15.4
|
0.2
|
CA
|
A:SER55
|
3.6
|
8.8
|
0.6
|
C
|
A:SER55
|
3.7
|
6.3
|
0.4
|
HB2
|
A:SER55
|
3.7
|
13.8
|
0.4
|
HG3
|
A:ARG43
|
3.8
|
11.0
|
1.0
|
CE
|
A:MET57
|
3.9
|
12.9
|
1.0
|
CG2
|
A:VAL93
|
3.9
|
13.3
|
0.8
|
HG21
|
A:VAL93
|
3.9
|
15.9
|
0.8
|
HG21
|
A:VAL93
|
3.9
|
15.8
|
0.2
|
CG2
|
A:VAL93
|
3.9
|
13.1
|
0.2
|
N
|
A:PHE56
|
3.9
|
8.0
|
1.0
|
C12
|
A:2P9201
|
3.9
|
12.7
|
0.5
|
C06
|
A:2P9201
|
4.0
|
12.5
|
0.5
|
H
|
A:PHE56
|
4.0
|
9.6
|
0.4
|
CG
|
A:MET57
|
4.0
|
9.8
|
1.0
|
HE
|
A:ARG43
|
4.0
|
14.5
|
1.0
|
HD2
|
A:ARG43
|
4.0
|
13.3
|
1.0
|
NE
|
A:ARG43
|
4.0
|
12.1
|
1.0
|
O
|
A:SER54
|
4.0
|
10.3
|
1.0
|
C06
|
A:2P9201
|
4.0
|
11.2
|
0.5
|
C12
|
A:2P9201
|
4.0
|
10.6
|
0.5
|
H
|
A:PHE56
|
4.1
|
9.6
|
0.6
|
CB
|
A:SER55
|
4.2
|
11.5
|
0.4
|
HB3
|
A:SER55
|
4.2
|
12.7
|
0.6
|
CB
|
A:VAL93
|
4.3
|
11.5
|
0.8
|
O
|
A:SER55
|
4.3
|
5.6
|
0.4
|
HG12
|
A:VAL93
|
4.3
|
15.8
|
0.8
|
O
|
A:PHE56
|
4.3
|
7.9
|
1.0
|
CB
|
A:VAL93
|
4.3
|
11.5
|
0.2
|
HG12
|
A:VAL93
|
4.3
|
15.4
|
0.2
|
HA
|
A:VAL93
|
4.3
|
10.9
|
0.8
|
C
|
A:PHE56
|
4.3
|
7.7
|
1.0
|
HE3
|
A:MET57
|
4.3
|
15.6
|
1.0
|
SD
|
A:MET57
|
4.3
|
11.2
|
1.0
|
HA
|
A:VAL93
|
4.3
|
11.1
|
0.2
|
CD
|
A:ARG43
|
4.4
|
11.1
|
1.0
|
CZ
|
A:ARG43
|
4.4
|
13.5
|
1.0
|
HG2
|
A:MET57
|
4.4
|
11.7
|
1.0
|
HE1
|
A:MET57
|
4.4
|
15.6
|
1.0
|
C13
|
A:2P9201
|
4.4
|
13.5
|
0.5
|
CG
|
A:ARG43
|
4.5
|
9.2
|
1.0
|
CB
|
A:SER55
|
4.5
|
10.5
|
0.6
|
C13
|
A:2P9201
|
4.5
|
10.9
|
0.5
|
HH21
|
A:ARG43
|
4.6
|
17.2
|
1.0
|
HB3
|
A:SER55
|
4.6
|
13.8
|
0.4
|
CA
|
A:PHE56
|
4.6
|
7.3
|
1.0
|
N
|
A:SER55
|
4.7
|
8.1
|
0.4
|
HG
|
A:SER55
|
4.7
|
12.8
|
0.6
|
NH2
|
A:ARG43
|
4.7
|
14.3
|
1.0
|
N
|
A:SER55
|
4.7
|
8.2
|
0.6
|
HG23
|
A:VAL93
|
4.7
|
15.9
|
0.8
|
HG23
|
A:VAL93
|
4.7
|
15.8
|
0.2
|
N
|
A:MET57
|
4.7
|
7.5
|
1.0
|
C
|
A:SER54
|
4.8
|
8.6
|
1.0
|
HA
|
A:PHE56
|
4.8
|
8.8
|
1.0
|
CA
|
A:VAL93
|
4.9
|
9.1
|
0.8
|
HB2
|
A:MET57
|
4.9
|
11.3
|
1.0
|
CA
|
A:VAL93
|
4.9
|
9.2
|
0.2
|
H
|
A:MET57
|
5.0
|
8.9
|
1.0
|
H
|
A:VAL94
|
5.0
|
10.0
|
0.2
|
CB
|
A:MET57
|
5.0
|
9.4
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 4o0a
Go back to
Chlorine Binding Sites List in 4o0a
Chlorine binding site 3 out
of 6 in the Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:14.7
occ:0.51
|
CL
|
A:2P9201
|
0.0
|
14.7
|
0.5
|
CL
|
A:2P9201
|
0.6
|
11.2
|
0.5
|
C10
|
A:2P9201
|
1.7
|
10.8
|
0.5
|
C10
|
A:2P9201
|
1.9
|
11.7
|
0.5
|
C12
|
A:2P9201
|
2.7
|
12.7
|
0.5
|
C08
|
A:2P9201
|
2.7
|
11.7
|
0.5
|
HG
|
A:SER55
|
2.8
|
12.8
|
0.6
|
C08
|
A:2P9201
|
2.8
|
11.7
|
0.5
|
HG22
|
A:VAL93
|
2.9
|
15.9
|
0.8
|
HB2
|
A:SER55
|
2.9
|
13.8
|
0.4
|
C12
|
A:2P9201
|
2.9
|
10.6
|
0.5
|
HG22
|
A:VAL93
|
2.9
|
15.8
|
0.2
|
HA
|
A:SER55
|
3.0
|
10.6
|
0.6
|
CL2
|
A:2P9201
|
3.1
|
14.6
|
0.5
|
HA
|
A:SER55
|
3.1
|
11.0
|
0.4
|
HB3
|
A:SER55
|
3.1
|
13.8
|
0.4
|
CL2
|
A:2P9201
|
3.3
|
9.3
|
0.5
|
CB
|
A:SER55
|
3.3
|
11.5
|
0.4
|
O
|
A:HOH311
|
3.4
|
16.4
|
1.0
|
HB3
|
A:SER55
|
3.4
|
12.7
|
0.6
|
OG
|
A:SER55
|
3.5
|
10.6
|
0.6
|
CA
|
A:SER55
|
3.7
|
9.2
|
0.4
|
CB
|
A:SER55
|
3.7
|
10.5
|
0.6
|
CG2
|
A:VAL93
|
3.8
|
13.3
|
0.8
|
CA
|
A:SER55
|
3.8
|
8.8
|
0.6
|
CG2
|
A:VAL93
|
3.8
|
13.1
|
0.2
|
HD2
|
A:ARG91
|
3.9
|
20.6
|
1.0
|
HH21
|
A:ARG43
|
3.9
|
17.2
|
1.0
|
HG23
|
A:VAL93
|
4.0
|
15.9
|
0.8
|
C13
|
A:2P9201
|
4.0
|
13.5
|
0.5
|
C07
|
A:2P9201
|
4.0
|
11.3
|
0.5
|
C07
|
A:2P9201
|
4.1
|
11.4
|
0.5
|
HG21
|
A:VAL93
|
4.1
|
15.9
|
0.8
|
NH2
|
A:ARG43
|
4.1
|
14.3
|
1.0
|
HG23
|
A:VAL93
|
4.1
|
15.8
|
0.2
|
C13
|
A:2P9201
|
4.1
|
10.9
|
0.5
|
HG21
|
A:VAL93
|
4.2
|
15.8
|
0.2
|
HH22
|
A:ARG43
|
4.2
|
17.2
|
1.0
|
HB3
|
A:ARG91
|
4.2
|
16.0
|
1.0
|
O
|
A:ARG92
|
4.2
|
13.1
|
1.0
|
HA
|
A:VAL93
|
4.4
|
11.1
|
0.2
|
HA
|
A:VAL93
|
4.4
|
10.9
|
0.8
|
O
|
A:HOH375
|
4.4
|
34.3
|
1.0
|
HG13
|
A:VAL93
|
4.5
|
15.8
|
0.8
|
HG13
|
A:VAL93
|
4.5
|
15.4
|
0.2
|
HH21
|
A:ARG91
|
4.5
|
27.5
|
1.0
|
C06
|
A:2P9201
|
4.5
|
12.5
|
0.5
|
C
|
A:SER55
|
4.6
|
8.4
|
0.6
|
C06
|
A:2P9201
|
4.6
|
11.2
|
0.5
|
CZ
|
A:ARG43
|
4.6
|
13.5
|
1.0
|
OG
|
A:SER55
|
4.7
|
19.9
|
0.4
|
N
|
A:SER55
|
4.7
|
8.1
|
0.4
|
HD11
|
A:LEU87
|
4.7
|
14.5
|
1.0
|
HB2
|
A:SER55
|
4.7
|
12.7
|
0.6
|
O
|
A:SER55
|
4.7
|
10.4
|
0.6
|
C
|
A:SER55
|
4.7
|
6.3
|
0.4
|
N
|
A:SER55
|
4.7
|
8.2
|
0.6
|
O
|
A:SER54
|
4.8
|
10.3
|
1.0
|
CB
|
A:VAL93
|
4.8
|
11.5
|
0.8
|
CD
|
A:ARG91
|
4.8
|
17.2
|
1.0
|
NH2
|
A:ARG91
|
4.9
|
22.9
|
1.0
|
CB
|
A:VAL93
|
4.9
|
11.5
|
0.2
|
HG
|
A:SER54
|
4.9
|
26.0
|
1.0
|
HE
|
A:ARG43
|
4.9
|
14.5
|
1.0
|
NE
|
A:ARG43
|
5.0
|
12.1
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 4o0a
Go back to
Chlorine Binding Sites List in 4o0a
Chlorine binding site 4 out
of 6 in the Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:11.2
occ:0.49
|
CL
|
A:2P9201
|
0.0
|
11.2
|
0.5
|
CL
|
A:2P9201
|
0.6
|
14.7
|
0.5
|
C10
|
A:2P9201
|
1.7
|
11.7
|
0.5
|
C10
|
A:2P9201
|
1.7
|
10.8
|
0.5
|
HG
|
A:SER55
|
2.7
|
12.8
|
0.6
|
C12
|
A:2P9201
|
2.7
|
10.6
|
0.5
|
C12
|
A:2P9201
|
2.7
|
12.7
|
0.5
|
C08
|
A:2P9201
|
2.7
|
11.7
|
0.5
|
C08
|
A:2P9201
|
2.7
|
11.7
|
0.5
|
HA
|
A:SER55
|
2.8
|
10.6
|
0.6
|
HA
|
A:SER55
|
2.9
|
11.0
|
0.4
|
HB3
|
A:SER55
|
3.1
|
13.8
|
0.4
|
HB2
|
A:SER55
|
3.1
|
13.8
|
0.4
|
CL2
|
A:2P9201
|
3.1
|
14.6
|
0.5
|
CL2
|
A:2P9201
|
3.2
|
9.3
|
0.5
|
HH21
|
A:ARG43
|
3.3
|
17.2
|
1.0
|
CB
|
A:SER55
|
3.4
|
11.5
|
0.4
|
HG22
|
A:VAL93
|
3.4
|
15.9
|
0.8
|
OG
|
A:SER55
|
3.4
|
10.6
|
0.6
|
NH2
|
A:ARG43
|
3.5
|
14.3
|
1.0
|
HG22
|
A:VAL93
|
3.5
|
15.8
|
0.2
|
HH22
|
A:ARG43
|
3.6
|
17.2
|
1.0
|
CA
|
A:SER55
|
3.6
|
9.2
|
0.4
|
O
|
A:HOH311
|
3.6
|
16.4
|
1.0
|
HB3
|
A:SER55
|
3.6
|
12.7
|
0.6
|
CA
|
A:SER55
|
3.7
|
8.8
|
0.6
|
CB
|
A:SER55
|
3.8
|
10.5
|
0.6
|
C07
|
A:2P9201
|
4.0
|
11.3
|
0.5
|
C13
|
A:2P9201
|
4.0
|
13.5
|
0.5
|
C13
|
A:2P9201
|
4.0
|
10.9
|
0.5
|
C07
|
A:2P9201
|
4.0
|
11.4
|
0.5
|
HD2
|
A:ARG91
|
4.0
|
20.6
|
1.0
|
CZ
|
A:ARG43
|
4.0
|
13.5
|
1.0
|
O
|
A:HOH375
|
4.1
|
34.3
|
1.0
|
HG
|
A:SER54
|
4.3
|
26.0
|
1.0
|
CG2
|
A:VAL93
|
4.4
|
13.3
|
0.8
|
O
|
A:SER54
|
4.4
|
10.3
|
1.0
|
N
|
A:SER55
|
4.4
|
8.1
|
0.4
|
CG2
|
A:VAL93
|
4.4
|
13.1
|
0.2
|
HE
|
A:ARG43
|
4.4
|
14.5
|
1.0
|
HH21
|
A:ARG91
|
4.4
|
27.5
|
1.0
|
C06
|
A:2P9201
|
4.5
|
12.5
|
0.5
|
C06
|
A:2P9201
|
4.5
|
11.2
|
0.5
|
NE
|
A:ARG43
|
4.5
|
12.1
|
1.0
|
N
|
A:SER55
|
4.5
|
8.2
|
0.6
|
O
|
A:HOH416
|
4.5
|
30.2
|
1.0
|
HB3
|
A:ARG91
|
4.6
|
16.0
|
1.0
|
C
|
A:SER55
|
4.6
|
8.4
|
0.6
|
HG21
|
A:VAL93
|
4.6
|
15.9
|
0.8
|
HG23
|
A:VAL93
|
4.6
|
15.9
|
0.8
|
O
|
A:ARG92
|
4.7
|
13.1
|
1.0
|
C
|
A:SER54
|
4.7
|
8.6
|
1.0
|
HG21
|
A:VAL93
|
4.7
|
15.8
|
0.2
|
HG23
|
A:VAL93
|
4.7
|
15.8
|
0.2
|
HB2
|
A:SER55
|
4.8
|
12.7
|
0.6
|
C
|
A:SER55
|
4.8
|
6.3
|
0.4
|
OG
|
A:SER55
|
4.8
|
19.9
|
0.4
|
NH1
|
A:ARG43
|
4.8
|
13.1
|
1.0
|
HG13
|
A:VAL93
|
4.8
|
15.8
|
0.8
|
NH2
|
A:ARG91
|
4.8
|
22.9
|
1.0
|
HH12
|
A:ARG43
|
4.8
|
15.8
|
1.0
|
HG13
|
A:VAL93
|
4.9
|
15.4
|
0.2
|
O
|
A:HOH419
|
4.9
|
36.2
|
1.0
|
HA
|
A:VAL93
|
4.9
|
11.1
|
0.2
|
HA
|
A:VAL93
|
4.9
|
10.9
|
0.8
|
O
|
A:SER55
|
4.9
|
10.4
|
0.6
|
H
|
A:SER55
|
4.9
|
9.8
|
0.4
|
CD
|
A:ARG91
|
5.0
|
17.2
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 4o0a
Go back to
Chlorine Binding Sites List in 4o0a
Chlorine binding site 5 out
of 6 in the Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:12.7
occ:0.51
|
CL3
|
A:2P9201
|
0.0
|
12.7
|
0.5
|
CL3
|
A:2P9201
|
0.8
|
13.2
|
0.5
|
C35
|
A:2P9201
|
1.6
|
11.3
|
0.5
|
C35
|
A:2P9201
|
1.7
|
12.4
|
0.5
|
C34
|
A:2P9201
|
2.5
|
12.1
|
0.5
|
C22
|
A:2P9201
|
2.6
|
12.0
|
0.5
|
C34
|
A:2P9201
|
2.7
|
11.9
|
0.5
|
C22
|
A:2P9201
|
2.8
|
14.2
|
0.5
|
N20
|
A:2P9201
|
2.8
|
24.6
|
0.5
|
HE3
|
A:MET57
|
2.8
|
15.6
|
1.0
|
HE1
|
A:MET57
|
2.9
|
15.6
|
1.0
|
HD3
|
A:ARG41
|
3.1
|
8.9
|
0.4
|
C21
|
A:2P9201
|
3.2
|
11.3
|
0.5
|
HD2
|
A:ARG41
|
3.2
|
8.9
|
0.4
|
CE
|
A:MET57
|
3.3
|
12.9
|
1.0
|
N20
|
A:2P9201
|
3.3
|
7.9
|
0.5
|
C21
|
A:2P9201
|
3.3
|
14.4
|
0.5
|
CD
|
A:ARG41
|
3.4
|
7.4
|
0.4
|
NE
|
A:ARG41
|
3.5
|
9.0
|
0.4
|
HE
|
A:ARG41
|
3.5
|
15.1
|
0.6
|
HD11
|
A:ILE95
|
3.6
|
16.5
|
1.0
|
HD12
|
A:ILE95
|
3.6
|
16.5
|
1.0
|
C38
|
A:2P9201
|
3.6
|
12.7
|
0.5
|
HD2
|
A:ARG41
|
3.7
|
13.5
|
0.6
|
HE
|
A:ARG41
|
3.7
|
10.8
|
0.4
|
NE
|
A:ARG41
|
3.7
|
12.6
|
0.6
|
C25
|
A:2P9201
|
3.8
|
11.9
|
0.5
|
C23
|
A:2P9201
|
3.9
|
11.8
|
0.5
|
SD
|
A:MET57
|
3.9
|
11.2
|
1.0
|
CZ
|
A:ARG41
|
3.9
|
10.6
|
0.6
|
CZ
|
A:ARG41
|
3.9
|
10.3
|
0.4
|
C38
|
A:2P9201
|
4.0
|
14.4
|
0.5
|
S37
|
A:2P9201
|
4.0
|
9.6
|
0.5
|
C25
|
A:2P9201
|
4.0
|
11.8
|
0.5
|
C23
|
A:2P9201
|
4.0
|
14.2
|
0.5
|
HG2
|
A:ARG41
|
4.0
|
15.1
|
0.6
|
CD1
|
A:ILE95
|
4.1
|
13.8
|
1.0
|
O
|
A:HOH415
|
4.1
|
31.2
|
1.0
|
CD
|
A:ARG41
|
4.1
|
11.2
|
0.6
|
HE2
|
A:MET57
|
4.2
|
15.6
|
1.0
|
HH21
|
A:ARG41
|
4.2
|
16.5
|
0.6
|
NH2
|
A:ARG41
|
4.2
|
13.8
|
0.6
|
HH21
|
A:ARG41
|
4.2
|
13.1
|
0.4
|
C19
|
A:2P9201
|
4.2
|
14.5
|
0.5
|
HB2
|
A:MET57
|
4.2
|
11.3
|
1.0
|
C18
|
A:2P9201
|
4.2
|
10.8
|
0.5
|
NH2
|
A:ARG41
|
4.3
|
10.9
|
0.4
|
C24
|
A:2P9201
|
4.3
|
12.3
|
0.5
|
C39
|
A:2P9201
|
4.3
|
15.1
|
0.5
|
S37
|
A:2P9201
|
4.3
|
21.9
|
0.5
|
C19
|
A:2P9201
|
4.4
|
14.2
|
0.5
|
C18
|
A:2P9201
|
4.4
|
12.6
|
0.5
|
HB3
|
A:MET57
|
4.5
|
11.3
|
1.0
|
NH1
|
A:ARG41
|
4.5
|
11.6
|
0.6
|
C24
|
A:2P9201
|
4.5
|
15.3
|
0.5
|
HD13
|
A:ILE95
|
4.6
|
16.5
|
1.0
|
O
|
A:HOH352
|
4.6
|
24.5
|
1.0
|
NH1
|
A:ARG41
|
4.6
|
9.7
|
0.4
|
CG
|
A:ARG41
|
4.6
|
12.6
|
0.6
|
HH22
|
A:ARG41
|
4.7
|
16.5
|
0.6
|
HH11
|
A:ARG41
|
4.7
|
13.9
|
0.6
|
C39
|
A:2P9201
|
4.7
|
12.3
|
0.5
|
HH11
|
A:ARG41
|
4.7
|
11.7
|
0.4
|
CB
|
A:MET57
|
4.7
|
9.4
|
1.0
|
O
|
A:HOH420
|
4.8
|
37.9
|
1.0
|
HH22
|
A:ARG41
|
4.8
|
13.1
|
0.4
|
C26
|
A:2P9201
|
4.9
|
11.9
|
0.5
|
CG
|
A:ARG41
|
4.9
|
8.1
|
0.4
|
HG11
|
A:VAL93
|
4.9
|
15.8
|
0.8
|
HG11
|
A:VAL93
|
4.9
|
15.4
|
0.2
|
HH12
|
A:ARG41
|
5.0
|
13.9
|
0.6
|
HD13
|
A:ILE33
|
5.0
|
17.9
|
1.0
|
CG
|
A:MET57
|
5.0
|
9.8
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 4o0a
Go back to
Chlorine Binding Sites List in 4o0a
Chlorine binding site 6 out
of 6 in the Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Fragment-Based Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:13.2
occ:0.49
|
CL3
|
A:2P9201
|
0.0
|
13.2
|
0.5
|
CL3
|
A:2P9201
|
0.8
|
12.7
|
0.5
|
C35
|
A:2P9201
|
1.8
|
11.3
|
0.5
|
C35
|
A:2P9201
|
2.1
|
12.4
|
0.5
|
C34
|
A:2P9201
|
2.7
|
12.1
|
0.5
|
N20
|
A:2P9201
|
2.7
|
24.6
|
0.5
|
C22
|
A:2P9201
|
2.8
|
12.0
|
0.5
|
C34
|
A:2P9201
|
3.0
|
11.9
|
0.5
|
C22
|
A:2P9201
|
3.0
|
14.2
|
0.5
|
N20
|
A:2P9201
|
3.1
|
7.9
|
0.5
|
HD2
|
A:ARG41
|
3.2
|
8.9
|
0.4
|
C21
|
A:2P9201
|
3.2
|
11.3
|
0.5
|
HE
|
A:ARG41
|
3.3
|
15.1
|
0.6
|
HE1
|
A:MET57
|
3.3
|
15.6
|
1.0
|
C38
|
A:2P9201
|
3.3
|
12.7
|
0.5
|
HD3
|
A:ARG41
|
3.4
|
8.9
|
0.4
|
C21
|
A:2P9201
|
3.4
|
14.4
|
0.5
|
HE
|
A:ARG41
|
3.4
|
10.8
|
0.4
|
NE
|
A:ARG41
|
3.4
|
9.0
|
0.4
|
O
|
A:HOH415
|
3.4
|
31.2
|
1.0
|
HE3
|
A:MET57
|
3.5
|
15.6
|
1.0
|
CD
|
A:ARG41
|
3.5
|
7.4
|
0.4
|
C38
|
A:2P9201
|
3.7
|
14.4
|
0.5
|
NE
|
A:ARG41
|
3.7
|
12.6
|
0.6
|
CE
|
A:MET57
|
3.8
|
12.9
|
1.0
|
HH21
|
A:ARG41
|
3.8
|
16.5
|
0.6
|
CZ
|
A:ARG41
|
3.9
|
10.6
|
0.6
|
CZ
|
A:ARG41
|
4.0
|
10.3
|
0.4
|
C25
|
A:2P9201
|
4.0
|
11.9
|
0.5
|
C19
|
A:2P9201
|
4.0
|
14.5
|
0.5
|
NH2
|
A:ARG41
|
4.0
|
13.8
|
0.6
|
HD2
|
A:ARG41
|
4.0
|
13.5
|
0.6
|
O
|
A:HOH352
|
4.0
|
24.5
|
1.0
|
HG2
|
A:ARG41
|
4.1
|
15.1
|
0.6
|
C18
|
A:2P9201
|
4.1
|
10.8
|
0.5
|
C23
|
A:2P9201
|
4.1
|
11.8
|
0.5
|
C39
|
A:2P9201
|
4.1
|
15.1
|
0.5
|
C19
|
A:2P9201
|
4.2
|
14.2
|
0.5
|
C18
|
A:2P9201
|
4.2
|
12.6
|
0.5
|
C25
|
A:2P9201
|
4.2
|
11.8
|
0.5
|
C23
|
A:2P9201
|
4.2
|
14.2
|
0.5
|
SD
|
A:MET57
|
4.3
|
11.2
|
1.0
|
CD
|
A:ARG41
|
4.3
|
11.2
|
0.6
|
S37
|
A:2P9201
|
4.3
|
9.6
|
0.5
|
HD11
|
A:ILE95
|
4.3
|
16.5
|
1.0
|
O
|
A:HOH420
|
4.3
|
37.9
|
1.0
|
HD12
|
A:ILE95
|
4.4
|
16.5
|
1.0
|
C39
|
A:2P9201
|
4.5
|
12.3
|
0.5
|
HH11
|
A:ARG41
|
4.5
|
11.7
|
0.4
|
NH1
|
A:ARG41
|
4.5
|
9.7
|
0.4
|
HH22
|
A:ARG41
|
4.5
|
16.5
|
0.6
|
NH2
|
A:ARG41
|
4.5
|
10.9
|
0.4
|
HH21
|
A:ARG41
|
4.6
|
13.1
|
0.4
|
C24
|
A:2P9201
|
4.6
|
12.3
|
0.5
|
S37
|
A:2P9201
|
4.6
|
21.9
|
0.5
|
HE2
|
A:MET57
|
4.7
|
15.6
|
1.0
|
CG
|
A:ARG41
|
4.7
|
12.6
|
0.6
|
NH1
|
A:ARG41
|
4.7
|
11.6
|
0.6
|
C24
|
A:2P9201
|
4.8
|
15.3
|
0.5
|
CD1
|
A:ILE95
|
4.8
|
13.8
|
1.0
|
HD13
|
A:ILE33
|
4.9
|
17.9
|
1.0
|
HD11
|
A:ILE33
|
4.9
|
17.9
|
1.0
|
HB2
|
A:MET57
|
5.0
|
11.3
|
1.0
|
HH11
|
A:ARG41
|
5.0
|
13.9
|
0.6
|
|
Reference:
A.O.Frank,
M.D.Feldkamp,
J.P.Kennedy,
A.G.Waterson,
N.F.Pelz,
J.D.Patrone,
B.Vangamudi,
D.V.Camper,
O.W.Rossanese,
W.J.Chazin,
S.W.Fesik.
Discovery of A Potent Inhibitor of Replication Protein A Protein-Protein Interactions Using A Fragment-Linking Approach J.Med.Chem. V. 56 9242 2013.
ISSN: ISSN 0022-2623
Page generated: Thu Jul 25 23:11:13 2024
|