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Chlorine in PDB 4o6l: Crystal Structure of Ttk Kinase Domain with An Inhibitor: 401498 (N- [(1R)-1-(2-Chlorophenyl)Propyl]-3-{4-[(1-Methylpiperidin-4-Yl) Oxy]Phenyl}-1H-Indazole-5-Carboxamide)

Enzymatic activity of Crystal Structure of Ttk Kinase Domain with An Inhibitor: 401498 (N- [(1R)-1-(2-Chlorophenyl)Propyl]-3-{4-[(1-Methylpiperidin-4-Yl) Oxy]Phenyl}-1H-Indazole-5-Carboxamide)

All present enzymatic activity of Crystal Structure of Ttk Kinase Domain with An Inhibitor: 401498 (N- [(1R)-1-(2-Chlorophenyl)Propyl]-3-{4-[(1-Methylpiperidin-4-Yl) Oxy]Phenyl}-1H-Indazole-5-Carboxamide):
2.7.12.1;

Protein crystallography data

The structure of Crystal Structure of Ttk Kinase Domain with An Inhibitor: 401498 (N- [(1R)-1-(2-Chlorophenyl)Propyl]-3-{4-[(1-Methylpiperidin-4-Yl) Oxy]Phenyl}-1H-Indazole-5-Carboxamide), PDB code: 4o6l was solved by W.Qiu, O.Plotnikova, M.Feher, D.E.Awrey, N.Y.Chirgadze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.27 / 2.38
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 153.232, 70.260, 106.889, 90.00, 133.14, 90.00
R / Rfree (%) 21 / 25

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Ttk Kinase Domain with An Inhibitor: 401498 (N- [(1R)-1-(2-Chlorophenyl)Propyl]-3-{4-[(1-Methylpiperidin-4-Yl) Oxy]Phenyl}-1H-Indazole-5-Carboxamide) (pdb code 4o6l). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Ttk Kinase Domain with An Inhibitor: 401498 (N- [(1R)-1-(2-Chlorophenyl)Propyl]-3-{4-[(1-Methylpiperidin-4-Yl) Oxy]Phenyl}-1H-Indazole-5-Carboxamide), PDB code: 4o6l:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4o6l

Go back to Chlorine Binding Sites List in 4o6l
Chlorine binding site 1 out of 2 in the Crystal Structure of Ttk Kinase Domain with An Inhibitor: 401498 (N- [(1R)-1-(2-Chlorophenyl)Propyl]-3-{4-[(1-Methylpiperidin-4-Yl) Oxy]Phenyl}-1H-Indazole-5-Carboxamide)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Ttk Kinase Domain with An Inhibitor: 401498 (N- [(1R)-1-(2-Chlorophenyl)Propyl]-3-{4-[(1-Methylpiperidin-4-Yl) Oxy]Phenyl}-1H-Indazole-5-Carboxamide) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1001

b:58.9
occ:1.00
CL A:2QK1001 0.0 58.9 1.0
C35 A:2QK1001 1.7 54.6 1.0
C34 A:2QK1001 2.7 51.9 1.0
C30 A:2QK1001 2.8 53.1 1.0
NZ A:LYS553 3.3 51.2 1.0
C02 A:2QK1001 3.3 54.2 1.0
N A:MET671 3.3 75.2 1.0
C03 A:2QK1001 3.5 43.2 1.0
CE A:LYS553 3.5 52.3 1.0
O06 A:2QK1001 3.6 42.2 1.0
CE A:MET671 3.8 65.2 1.0
CB A:MET671 3.9 67.6 1.0
C33 A:2QK1001 4.0 52.4 1.0
CA A:GLN670 4.1 76.4 1.0
CG A:GLN670 4.1 71.3 1.0
C31 A:2QK1001 4.1 44.4 1.0
C A:GLN670 4.1 79.1 1.0
CA A:MET671 4.2 72.6 1.0
CG A:MET671 4.2 72.2 1.0
N04 A:2QK1001 4.3 45.2 1.0
O A:HOH1111 4.4 47.8 1.0
C05 A:2QK1001 4.4 40.7 1.0
O A:ASN669 4.4 77.2 1.0
C32 A:2QK1001 4.6 47.9 1.0
CB A:GLN670 4.7 70.7 1.0
O A:MET671 4.7 72.9 1.0
SD A:MET671 4.7 66.0 1.0
C01 A:2QK1001 4.8 58.9 1.0
C A:MET671 4.8 74.3 1.0
CD A:LYS553 4.9 53.1 1.0
OH A:TYR568 4.9 81.1 1.0

Chlorine binding site 2 out of 2 in 4o6l

Go back to Chlorine Binding Sites List in 4o6l
Chlorine binding site 2 out of 2 in the Crystal Structure of Ttk Kinase Domain with An Inhibitor: 401498 (N- [(1R)-1-(2-Chlorophenyl)Propyl]-3-{4-[(1-Methylpiperidin-4-Yl) Oxy]Phenyl}-1H-Indazole-5-Carboxamide)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Ttk Kinase Domain with An Inhibitor: 401498 (N- [(1R)-1-(2-Chlorophenyl)Propyl]-3-{4-[(1-Methylpiperidin-4-Yl) Oxy]Phenyl}-1H-Indazole-5-Carboxamide) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1001

b:58.4
occ:1.00
CL B:2QK1001 0.0 58.4 1.0
C35 B:2QK1001 1.7 52.4 1.0
C34 B:2QK1001 2.7 46.9 1.0
C30 B:2QK1001 2.8 46.6 1.0
OG B:SER537 3.1 66.8 1.0
C02 B:2QK1001 3.2 51.8 1.0
CE B:LYS553 3.4 52.5 1.0
NZ B:LYS553 3.4 55.3 1.0
C03 B:2QK1001 3.4 40.1 1.0
O06 B:2QK1001 3.7 41.1 1.0
CA B:GLY534 3.8 69.6 1.0
C33 B:2QK1001 4.0 47.7 1.0
CB B:SER537 4.1 62.7 1.0
C31 B:2QK1001 4.1 44.3 1.0
O B:GLY534 4.2 80.9 1.0
C B:GLY534 4.2 76.7 1.0
N B:GLY534 4.3 68.3 1.0
N04 B:2QK1001 4.3 43.7 1.0
C05 B:2QK1001 4.4 40.4 1.0
NE2 B:GLN670 4.5 71.9 1.0
C32 B:2QK1001 4.6 46.7 1.0
C01 B:2QK1001 4.7 54.8 1.0
CD B:LYS553 4.8 54.1 1.0
CD B:GLN670 4.8 74.2 1.0

Reference:

W.Qiu, O.Plotnikova, M.Feher, D.E.Awrey, N.Y.Chirgadze. Crystal Structure of Ttk Kinase Domain with An Inhibitor: 401498 To Be Published.
Page generated: Fri Jul 11 19:53:45 2025

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