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Chlorine in PDB 4odk: Structure of Slyd From Thermus Thermophilus in Complex with T1 Peptide

Enzymatic activity of Structure of Slyd From Thermus Thermophilus in Complex with T1 Peptide

All present enzymatic activity of Structure of Slyd From Thermus Thermophilus in Complex with T1 Peptide:
5.2.1.8;

Protein crystallography data

The structure of Structure of Slyd From Thermus Thermophilus in Complex with T1 Peptide, PDB code: 4odk was solved by E.M.Quistgaard, C.Low, P.Nordlund, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.10 / 1.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 87.500, 52.990, 48.910, 90.00, 111.18, 90.00
R / Rfree (%) 13.9 / 16.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Slyd From Thermus Thermophilus in Complex with T1 Peptide (pdb code 4odk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of Slyd From Thermus Thermophilus in Complex with T1 Peptide, PDB code: 4odk:

Chlorine binding site 1 out of 1 in 4odk

Go back to Chlorine Binding Sites List in 4odk
Chlorine binding site 1 out of 1 in the Structure of Slyd From Thermus Thermophilus in Complex with T1 Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Slyd From Thermus Thermophilus in Complex with T1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:27.0
occ:1.00
O C:HOH101 3.0 57.4 1.0
N A:ALA148 3.2 20.6 1.0
N A:LEU30 3.2 18.8 1.0
O A:HOH403 3.2 46.2 1.0
CA A:TYR29 3.5 18.3 1.0
CB A:HIS147 3.5 19.3 1.0
ND2 A:ASN35 3.5 26.4 1.0
CG A:ASN35 3.6 27.6 1.0
CA A:HIS147 3.6 18.8 1.0
CB A:TYR29 3.8 19.1 1.0
CB A:ASN35 3.8 26.7 1.0
C A:TYR29 3.8 18.1 1.0
C A:HIS147 3.9 19.8 1.0
CB A:ALA148 4.0 23.0 1.0
OD1 A:ASN35 4.1 34.2 1.0
CB A:LEU30 4.1 20.3 1.0
CA A:ALA148 4.2 21.1 1.0
CA A:LEU30 4.2 18.5 1.0
O A:SER28 4.3 30.7 1.0
O A:LEU30 4.7 20.7 1.0
CG A:HIS147 4.7 18.7 1.0
N A:TYR29 4.7 18.8 1.0
C A:LEU30 4.9 18.9 1.0
O A:ALA148 5.0 21.7 1.0
C A:SER28 5.0 24.9 1.0
ND1 A:HIS147 5.0 21.0 1.0
N A:HIS147 5.0 19.0 1.0
O A:GLY146 5.0 21.9 1.0

Reference:

E.M.Quistgaard, C.Low, P.Nordlund. Structure of Slyd From Thermus Thermophilus in Complex with T1 Peptide To Be Published.
Page generated: Sat Dec 12 11:00:50 2020

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