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Chlorine in PDB 4oj1: Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus

Enzymatic activity of Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus

All present enzymatic activity of Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus:
3.6.1.7;

Protein crystallography data

The structure of Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus, PDB code: 4oj1 was solved by I.Dilovic, M.Bolognesi, S.Ricagno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.58 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.150, 41.330, 91.400, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 22

Other elements in 4oj1:

The structure of Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus (pdb code 4oj1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus, PDB code: 4oj1:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4oj1

Go back to Chlorine Binding Sites List in 4oj1
Chlorine binding site 1 out of 4 in the Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:17.8
occ:1.00
OH A:TYR17 3.0 12.5 1.0
O A:HOH306 3.4 18.2 1.0
CD A:LYS92 3.8 16.3 0.5
CE2 A:TYR17 3.8 10.5 1.0
CZ A:TYR17 3.9 11.1 1.0
CD A:LYS92 4.1 16.2 0.5
CB A:SER89 4.1 11.4 1.0
NE A:ARG15 4.2 17.7 1.0
NZ A:LYS92 4.5 18.9 0.5
CZ A:ARG15 4.6 16.9 1.0
NH2 A:ARG15 4.6 18.8 1.0
O A:HOH350 4.7 24.6 1.0
OG A:SER89 4.7 14.3 1.0
O A:GLU90 4.7 12.6 1.0
CG A:LYS92 4.7 15.6 0.5
CD A:ARG15 4.7 15.3 1.0
CE A:LYS92 4.7 17.6 0.5
CG A:LYS92 4.8 15.7 0.5
CG A:ARG15 4.9 13.8 1.0
O A:HOH342 5.0 13.3 1.0

Chlorine binding site 2 out of 4 in 4oj1

Go back to Chlorine Binding Sites List in 4oj1
Chlorine binding site 2 out of 4 in the Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:26.6
occ:1.00
N A:ARG30 3.4 9.8 1.0
O A:HOH302 3.4 14.5 1.0
CA A:GLY28 3.5 10.4 1.0
N A:PHE29 3.5 10.1 1.0
C A:GLY28 3.6 11.0 1.0
NE A:ARG30 3.6 12.8 1.0
CB A:ARG30 3.8 9.5 1.0
N A:GLY28 3.9 9.2 1.0
NH2 A:ARG30 3.9 16.8 1.0
N A:LYS31 4.0 11.5 1.0
CA A:ARG30 4.0 9.9 1.0
O A:HOH323 4.1 15.6 1.0
O A:GLY28 4.2 12.2 1.0
CZ A:ARG30 4.2 13.8 1.0
C A:PHE29 4.3 9.3 1.0
CG A:ARG30 4.3 10.1 1.0
CA A:PHE29 4.4 9.7 1.0
C A:ARG30 4.5 10.6 1.0
CD A:ARG30 4.6 10.6 1.0
CB A:LYS31 4.8 13.8 1.0
CA A:LYS31 5.0 11.3 1.0

Chlorine binding site 3 out of 4 in 4oj1

Go back to Chlorine Binding Sites List in 4oj1
Chlorine binding site 3 out of 4 in the Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:35.0
occ:1.00
OH A:TYR91 3.3 15.7 1.0
CE1 A:TYR91 3.5 11.3 1.0
CZ A:TYR91 3.9 12.8 1.0
CG A:LYS43 3.9 12.6 1.0
O A:GLU59 3.9 7.3 1.0
CD A:LYS43 4.0 15.6 1.0
C A:GLU59 4.1 7.9 1.0
CB A:LYS43 4.2 10.5 1.0
CB A:GLU59 4.2 7.3 1.0
CA A:GLY60 4.3 7.2 1.0
N A:GLY60 4.4 7.8 1.0
O A:HOH336 4.5 23.2 1.0
CD1 A:TYR91 4.7 11.7 1.0
CA A:GLU59 4.9 7.3 1.0
O A:PHE95 4.9 14.9 1.0
OE1 A:GLU59 4.9 7.8 1.0
N A:LYS43 4.9 9.3 1.0

Chlorine binding site 4 out of 4 in 4oj1

Go back to Chlorine Binding Sites List in 4oj1
Chlorine binding site 4 out of 4 in the Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:27.7
occ:1.00
O B:HOH309 3.2 18.2 1.0
N B:PHE98 3.2 11.5 1.0
CB B:ASP97 3.3 17.9 1.0
CA B:ASP97 3.5 14.9 1.0
C B:ASP97 3.8 12.3 1.0
CG1 B:ILE38 3.8 12.0 1.0
CA B:PHE98 4.2 10.9 1.0
CB B:PHE98 4.3 10.9 1.0
CD1 B:ILE38 4.3 11.7 1.0
O B:PHE98 4.6 11.6 1.0
CG B:ASP97 4.7 19.8 1.0
O B:ILE42 4.8 8.7 1.0
NZ B:LYS43 4.8 19.6 1.0
N B:ASP97 4.9 14.5 1.0
CB B:ILE38 4.9 12.0 1.0
C B:PHE98 4.9 11.7 1.0
O B:GLU96 4.9 18.0 1.0
O B:ASP97 5.0 8.7 1.0

Reference:

I.Dilovic, M.Bolognesi, S.Ricagno. Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus To Be Published.
Page generated: Sat Dec 12 11:01:09 2020

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