Chlorine in PDB 4ot7: X-Structure of A Variant of Ncr From Zymomonas Mobilis

Protein crystallography data

The structure of X-Structure of A Variant of Ncr From Zymomonas Mobilis, PDB code: 4ot7 was solved by M.Genz, N.Strater, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.70 / 1.80
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 121.240, 121.240, 58.650, 90.00, 90.00, 120.00
R / Rfree (%) 17 / 19.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Structure of A Variant of Ncr From Zymomonas Mobilis (pdb code 4ot7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the X-Structure of A Variant of Ncr From Zymomonas Mobilis, PDB code: 4ot7:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 4ot7

Go back to Chlorine Binding Sites List in 4ot7
Chlorine binding site 1 out of 6 in the X-Structure of A Variant of Ncr From Zymomonas Mobilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Structure of A Variant of Ncr From Zymomonas Mobilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:33.9
occ:0.70
N A:ARG9 3.0 19.6 1.0
O A:HOH720 3.0 48.9 1.0
O A:HOH569 3.1 40.8 1.0
O A:HOH704 3.3 53.0 1.0
O A:HOH536 3.4 29.3 1.0
CA A:ILE8 3.7 20.5 1.0
CB A:ARG9 3.7 21.1 1.0
C A:ILE8 3.9 21.8 1.0
CA A:ARG9 3.9 18.6 1.0
NH2 A:ARG18 3.9 24.4 1.0
CG A:ARG9 4.1 21.6 1.0
CG1 A:ILE8 4.2 23.8 1.0
O A:PRO7 4.4 24.0 1.0
O A:ARG9 4.5 21.9 1.0
CB A:ILE8 4.5 21.8 1.0
N A:ILE8 4.6 20.4 1.0
C A:ARG9 4.7 19.6 1.0
O A:HOH540 4.8 34.1 1.0
O A:HOH636 4.8 48.5 1.0
C A:PRO7 4.9 23.8 1.0

Chlorine binding site 2 out of 6 in 4ot7

Go back to Chlorine Binding Sites List in 4ot7
Chlorine binding site 2 out of 6 in the X-Structure of A Variant of Ncr From Zymomonas Mobilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Structure of A Variant of Ncr From Zymomonas Mobilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:36.9
occ:0.90
CG A:GLU219 3.0 28.6 0.5
N A:GLU219 3.1 21.1 1.0
CB A:GLU219 3.3 25.1 0.5
CG A:GLU219 3.3 20.5 0.5
CB A:GLU219 3.3 20.5 0.5
CA A:GLY217 3.4 20.1 1.0
N A:LYS218 3.4 20.1 1.0
C A:GLY217 3.5 21.0 1.0
O A:HOH686 3.7 22.4 1.0
CA A:GLU219 3.8 23.0 0.5
CA A:GLU219 3.8 21.0 0.5
CD A:GLU219 4.0 20.0 0.5
CG A:LYS218 4.1 21.4 1.0
NH1 A:ARG220 4.1 21.9 1.0
C A:LYS218 4.2 22.1 1.0
CA A:LYS218 4.3 21.7 1.0
CD A:GLU219 4.3 33.2 0.5
O A:GLY217 4.3 19.1 1.0
OE1 A:GLU219 4.4 26.1 0.5
OE2 A:GLU219 4.5 20.0 0.5
OE2 A:GLU219 4.6 32.4 0.5
O A:ILE216 4.6 21.1 1.0
N A:GLY217 4.7 21.7 1.0
C A:GLU219 4.7 19.4 1.0
N A:ARG220 4.7 20.9 1.0
CB A:LYS218 4.8 21.0 1.0

Chlorine binding site 3 out of 6 in 4ot7

Go back to Chlorine Binding Sites List in 4ot7
Chlorine binding site 3 out of 6 in the X-Structure of A Variant of Ncr From Zymomonas Mobilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Structure of A Variant of Ncr From Zymomonas Mobilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:51.8
occ:0.90
N A:GLU37 3.3 26.6 1.0
O A:HOH520 3.5 26.6 1.0
CA A:THR36 3.7 25.9 1.0
CB A:THR36 3.7 26.4 1.0
CG A:GLU37 3.7 36.9 0.5
O A:HOH556 3.9 35.2 1.0
C A:THR36 4.0 27.1 1.0
CB A:GLU37 4.0 32.0 0.5
CG2 A:THR36 4.1 27.6 1.0
CB A:GLU37 4.2 32.0 0.5
CD A:GLU37 4.2 41.7 0.5
CA A:GLU37 4.3 28.3 0.5
CA A:GLU37 4.3 28.4 0.5
OE2 A:GLU37 4.4 46.1 0.5
O A:HOH524 4.8 43.2 1.0
OE1 A:GLU37 5.0 40.8 0.5
N A:THR36 5.0 23.1 1.0

Chlorine binding site 4 out of 6 in 4ot7

Go back to Chlorine Binding Sites List in 4ot7
Chlorine binding site 4 out of 6 in the X-Structure of A Variant of Ncr From Zymomonas Mobilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of X-Structure of A Variant of Ncr From Zymomonas Mobilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:41.2
occ:0.60
N A:SER60 3.0 33.1 1.0
N A:ILE59 3.1 26.2 1.0
O A:SER60 3.2 43.5 1.0
OG A:SER60 3.3 53.5 1.0
O A:TRP100 3.6 28.1 1.0
CA A:GLY58 3.6 23.9 1.0
O A:GLY63 3.7 0.3 1.0
C A:GLY58 3.8 23.8 1.0
C A:GLY63 3.8 0.2 1.0
CA A:SER60 3.9 41.0 1.0
N A:LEU64 3.9 0.4 1.0
C A:ILE59 3.9 30.2 1.0
O A:HOH731 3.9 39.5 1.0
C A:SER60 4.0 41.4 1.0
CA A:ILE59 4.0 26.8 1.0
CA A:LEU64 4.1 0.2 1.0
CG1 A:ILE59 4.1 28.5 1.0
CB A:SER60 4.1 42.8 1.0
CB A:LEU64 4.3 92.3 1.0
CA A:GLY63 4.4 99.6 1.0
CB A:ILE59 4.6 25.7 1.0
C A:TRP100 4.6 27.2 1.0
CD1 A:LEU64 4.7 60.2 1.0
N A:GLY63 4.8 89.7 1.0
O A:GLY58 4.8 23.4 1.0
CZ3 A:TRP73 4.8 28.0 1.0
CA A:HIS101 4.9 39.5 1.0
CG A:LEU64 4.9 77.3 1.0

Chlorine binding site 5 out of 6 in 4ot7

Go back to Chlorine Binding Sites List in 4ot7
Chlorine binding site 5 out of 6 in the X-Structure of A Variant of Ncr From Zymomonas Mobilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of X-Structure of A Variant of Ncr From Zymomonas Mobilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:35.3
occ:0.70
N A:ASP75 3.2 25.9 1.0
O A:HOH697 3.2 26.8 1.0
O A:HOH724 3.3 46.3 1.0
O A:HOH663 3.3 40.7 1.0
CA A:SER74 3.7 25.0 1.0
CG A:ASP75 3.8 41.2 1.0
CB A:ASP75 3.9 32.6 1.0
C A:SER74 3.9 26.4 1.0
CB A:SER74 4.0 24.6 1.0
OD2 A:ASP75 4.0 42.5 1.0
OD1 A:ASP75 4.0 39.6 1.0
CA A:ASP75 4.1 28.2 1.0
O A:HOH610 4.5 38.7 1.0
O A:HOH608 4.6 59.3 1.0
O A:TRP73 4.7 24.3 1.0
OG A:SER74 4.9 24.0 1.0
N A:ALA76 5.0 27.0 1.0
N A:SER74 5.0 23.1 1.0

Chlorine binding site 6 out of 6 in 4ot7

Go back to Chlorine Binding Sites List in 4ot7
Chlorine binding site 6 out of 6 in the X-Structure of A Variant of Ncr From Zymomonas Mobilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of X-Structure of A Variant of Ncr From Zymomonas Mobilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl407

b:49.8
occ:0.90
OD1 A:ASP340 3.0 46.7 1.0
O A:HOH656 3.0 42.6 1.0
O A:HOH605 3.3 45.3 1.0
CB A:ARG319 3.4 21.3 1.0
O A:HOH514 3.5 24.8 1.0
C A:ARG319 4.0 18.2 1.0
CG A:ASP340 4.0 41.1 1.0
O A:HOH529 4.1 28.9 1.0
N A:PRO320 4.1 20.0 1.0
OD2 A:ASP340 4.2 37.3 1.0
O A:ARG319 4.3 23.2 1.0
CA A:ARG319 4.3 20.5 1.0
CD A:PRO320 4.5 22.8 1.0
CA A:PRO320 4.5 22.6 1.0
CG A:ARG319 4.6 20.2 1.0
CG A:PRO320 4.6 24.3 1.0
CD A:ARG319 4.7 23.8 1.0

Reference:

S.Reich, M.Widmann, M.Genz, B.M.Nestl, B.Hauer. Surface Loops Representing Enzyme Modifying Element in the Field of Tuning Enzyme Properties To Be Published.
Page generated: Sat Dec 12 11:01:35 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy