Chlorine in PDB 4ot7: X-Structure of A Variant of Ncr From Zymomonas Mobilis
Protein crystallography data
The structure of X-Structure of A Variant of Ncr From Zymomonas Mobilis, PDB code: 4ot7
was solved by
M.Genz,
N.Strater,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.70 /
1.80
|
Space group
|
P 31 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
121.240,
121.240,
58.650,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
17 /
19.6
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the X-Structure of A Variant of Ncr From Zymomonas Mobilis
(pdb code 4ot7). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
X-Structure of A Variant of Ncr From Zymomonas Mobilis, PDB code: 4ot7:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 4ot7
Go back to
Chlorine Binding Sites List in 4ot7
Chlorine binding site 1 out
of 6 in the X-Structure of A Variant of Ncr From Zymomonas Mobilis
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of X-Structure of A Variant of Ncr From Zymomonas Mobilis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl402
b:33.9
occ:0.70
|
N
|
A:ARG9
|
3.0
|
19.6
|
1.0
|
O
|
A:HOH720
|
3.0
|
48.9
|
1.0
|
O
|
A:HOH569
|
3.1
|
40.8
|
1.0
|
O
|
A:HOH704
|
3.3
|
53.0
|
1.0
|
O
|
A:HOH536
|
3.4
|
29.3
|
1.0
|
CA
|
A:ILE8
|
3.7
|
20.5
|
1.0
|
CB
|
A:ARG9
|
3.7
|
21.1
|
1.0
|
C
|
A:ILE8
|
3.9
|
21.8
|
1.0
|
CA
|
A:ARG9
|
3.9
|
18.6
|
1.0
|
NH2
|
A:ARG18
|
3.9
|
24.4
|
1.0
|
CG
|
A:ARG9
|
4.1
|
21.6
|
1.0
|
CG1
|
A:ILE8
|
4.2
|
23.8
|
1.0
|
O
|
A:PRO7
|
4.4
|
24.0
|
1.0
|
O
|
A:ARG9
|
4.5
|
21.9
|
1.0
|
CB
|
A:ILE8
|
4.5
|
21.8
|
1.0
|
N
|
A:ILE8
|
4.6
|
20.4
|
1.0
|
C
|
A:ARG9
|
4.7
|
19.6
|
1.0
|
O
|
A:HOH540
|
4.8
|
34.1
|
1.0
|
O
|
A:HOH636
|
4.8
|
48.5
|
1.0
|
C
|
A:PRO7
|
4.9
|
23.8
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 4ot7
Go back to
Chlorine Binding Sites List in 4ot7
Chlorine binding site 2 out
of 6 in the X-Structure of A Variant of Ncr From Zymomonas Mobilis
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of X-Structure of A Variant of Ncr From Zymomonas Mobilis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl403
b:36.9
occ:0.90
|
CG
|
A:GLU219
|
3.0
|
28.6
|
0.5
|
N
|
A:GLU219
|
3.1
|
21.1
|
1.0
|
CB
|
A:GLU219
|
3.3
|
25.1
|
0.5
|
CG
|
A:GLU219
|
3.3
|
20.5
|
0.5
|
CB
|
A:GLU219
|
3.3
|
20.5
|
0.5
|
CA
|
A:GLY217
|
3.4
|
20.1
|
1.0
|
N
|
A:LYS218
|
3.4
|
20.1
|
1.0
|
C
|
A:GLY217
|
3.5
|
21.0
|
1.0
|
O
|
A:HOH686
|
3.7
|
22.4
|
1.0
|
CA
|
A:GLU219
|
3.8
|
23.0
|
0.5
|
CA
|
A:GLU219
|
3.8
|
21.0
|
0.5
|
CD
|
A:GLU219
|
4.0
|
20.0
|
0.5
|
CG
|
A:LYS218
|
4.1
|
21.4
|
1.0
|
NH1
|
A:ARG220
|
4.1
|
21.9
|
1.0
|
C
|
A:LYS218
|
4.2
|
22.1
|
1.0
|
CA
|
A:LYS218
|
4.3
|
21.7
|
1.0
|
CD
|
A:GLU219
|
4.3
|
33.2
|
0.5
|
O
|
A:GLY217
|
4.3
|
19.1
|
1.0
|
OE1
|
A:GLU219
|
4.4
|
26.1
|
0.5
|
OE2
|
A:GLU219
|
4.5
|
20.0
|
0.5
|
OE2
|
A:GLU219
|
4.6
|
32.4
|
0.5
|
O
|
A:ILE216
|
4.6
|
21.1
|
1.0
|
N
|
A:GLY217
|
4.7
|
21.7
|
1.0
|
C
|
A:GLU219
|
4.7
|
19.4
|
1.0
|
N
|
A:ARG220
|
4.7
|
20.9
|
1.0
|
CB
|
A:LYS218
|
4.8
|
21.0
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 4ot7
Go back to
Chlorine Binding Sites List in 4ot7
Chlorine binding site 3 out
of 6 in the X-Structure of A Variant of Ncr From Zymomonas Mobilis
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of X-Structure of A Variant of Ncr From Zymomonas Mobilis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl404
b:51.8
occ:0.90
|
N
|
A:GLU37
|
3.3
|
26.6
|
1.0
|
O
|
A:HOH520
|
3.5
|
26.6
|
1.0
|
CA
|
A:THR36
|
3.7
|
25.9
|
1.0
|
CB
|
A:THR36
|
3.7
|
26.4
|
1.0
|
CG
|
A:GLU37
|
3.7
|
36.9
|
0.5
|
O
|
A:HOH556
|
3.9
|
35.2
|
1.0
|
C
|
A:THR36
|
4.0
|
27.1
|
1.0
|
CB
|
A:GLU37
|
4.0
|
32.0
|
0.5
|
CG2
|
A:THR36
|
4.1
|
27.6
|
1.0
|
CB
|
A:GLU37
|
4.2
|
32.0
|
0.5
|
CD
|
A:GLU37
|
4.2
|
41.7
|
0.5
|
CA
|
A:GLU37
|
4.3
|
28.3
|
0.5
|
CA
|
A:GLU37
|
4.3
|
28.4
|
0.5
|
OE2
|
A:GLU37
|
4.4
|
46.1
|
0.5
|
O
|
A:HOH524
|
4.8
|
43.2
|
1.0
|
OE1
|
A:GLU37
|
5.0
|
40.8
|
0.5
|
N
|
A:THR36
|
5.0
|
23.1
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 4ot7
Go back to
Chlorine Binding Sites List in 4ot7
Chlorine binding site 4 out
of 6 in the X-Structure of A Variant of Ncr From Zymomonas Mobilis
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of X-Structure of A Variant of Ncr From Zymomonas Mobilis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl405
b:41.2
occ:0.60
|
N
|
A:SER60
|
3.0
|
33.1
|
1.0
|
N
|
A:ILE59
|
3.1
|
26.2
|
1.0
|
O
|
A:SER60
|
3.2
|
43.5
|
1.0
|
OG
|
A:SER60
|
3.3
|
53.5
|
1.0
|
O
|
A:TRP100
|
3.6
|
28.1
|
1.0
|
CA
|
A:GLY58
|
3.6
|
23.9
|
1.0
|
O
|
A:GLY63
|
3.7
|
0.3
|
1.0
|
C
|
A:GLY58
|
3.8
|
23.8
|
1.0
|
C
|
A:GLY63
|
3.8
|
0.2
|
1.0
|
CA
|
A:SER60
|
3.9
|
41.0
|
1.0
|
N
|
A:LEU64
|
3.9
|
0.4
|
1.0
|
C
|
A:ILE59
|
3.9
|
30.2
|
1.0
|
O
|
A:HOH731
|
3.9
|
39.5
|
1.0
|
C
|
A:SER60
|
4.0
|
41.4
|
1.0
|
CA
|
A:ILE59
|
4.0
|
26.8
|
1.0
|
CA
|
A:LEU64
|
4.1
|
0.2
|
1.0
|
CG1
|
A:ILE59
|
4.1
|
28.5
|
1.0
|
CB
|
A:SER60
|
4.1
|
42.8
|
1.0
|
CB
|
A:LEU64
|
4.3
|
92.3
|
1.0
|
CA
|
A:GLY63
|
4.4
|
99.6
|
1.0
|
CB
|
A:ILE59
|
4.6
|
25.7
|
1.0
|
C
|
A:TRP100
|
4.6
|
27.2
|
1.0
|
CD1
|
A:LEU64
|
4.7
|
60.2
|
1.0
|
N
|
A:GLY63
|
4.8
|
89.7
|
1.0
|
O
|
A:GLY58
|
4.8
|
23.4
|
1.0
|
CZ3
|
A:TRP73
|
4.8
|
28.0
|
1.0
|
CA
|
A:HIS101
|
4.9
|
39.5
|
1.0
|
CG
|
A:LEU64
|
4.9
|
77.3
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 4ot7
Go back to
Chlorine Binding Sites List in 4ot7
Chlorine binding site 5 out
of 6 in the X-Structure of A Variant of Ncr From Zymomonas Mobilis
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of X-Structure of A Variant of Ncr From Zymomonas Mobilis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl406
b:35.3
occ:0.70
|
N
|
A:ASP75
|
3.2
|
25.9
|
1.0
|
O
|
A:HOH697
|
3.2
|
26.8
|
1.0
|
O
|
A:HOH724
|
3.3
|
46.3
|
1.0
|
O
|
A:HOH663
|
3.3
|
40.7
|
1.0
|
CA
|
A:SER74
|
3.7
|
25.0
|
1.0
|
CG
|
A:ASP75
|
3.8
|
41.2
|
1.0
|
CB
|
A:ASP75
|
3.9
|
32.6
|
1.0
|
C
|
A:SER74
|
3.9
|
26.4
|
1.0
|
CB
|
A:SER74
|
4.0
|
24.6
|
1.0
|
OD2
|
A:ASP75
|
4.0
|
42.5
|
1.0
|
OD1
|
A:ASP75
|
4.0
|
39.6
|
1.0
|
CA
|
A:ASP75
|
4.1
|
28.2
|
1.0
|
O
|
A:HOH610
|
4.5
|
38.7
|
1.0
|
O
|
A:HOH608
|
4.6
|
59.3
|
1.0
|
O
|
A:TRP73
|
4.7
|
24.3
|
1.0
|
OG
|
A:SER74
|
4.9
|
24.0
|
1.0
|
N
|
A:ALA76
|
5.0
|
27.0
|
1.0
|
N
|
A:SER74
|
5.0
|
23.1
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 4ot7
Go back to
Chlorine Binding Sites List in 4ot7
Chlorine binding site 6 out
of 6 in the X-Structure of A Variant of Ncr From Zymomonas Mobilis
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of X-Structure of A Variant of Ncr From Zymomonas Mobilis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl407
b:49.8
occ:0.90
|
OD1
|
A:ASP340
|
3.0
|
46.7
|
1.0
|
O
|
A:HOH656
|
3.0
|
42.6
|
1.0
|
O
|
A:HOH605
|
3.3
|
45.3
|
1.0
|
CB
|
A:ARG319
|
3.4
|
21.3
|
1.0
|
O
|
A:HOH514
|
3.5
|
24.8
|
1.0
|
C
|
A:ARG319
|
4.0
|
18.2
|
1.0
|
CG
|
A:ASP340
|
4.0
|
41.1
|
1.0
|
O
|
A:HOH529
|
4.1
|
28.9
|
1.0
|
N
|
A:PRO320
|
4.1
|
20.0
|
1.0
|
OD2
|
A:ASP340
|
4.2
|
37.3
|
1.0
|
O
|
A:ARG319
|
4.3
|
23.2
|
1.0
|
CA
|
A:ARG319
|
4.3
|
20.5
|
1.0
|
CD
|
A:PRO320
|
4.5
|
22.8
|
1.0
|
CA
|
A:PRO320
|
4.5
|
22.6
|
1.0
|
CG
|
A:ARG319
|
4.6
|
20.2
|
1.0
|
CG
|
A:PRO320
|
4.6
|
24.3
|
1.0
|
CD
|
A:ARG319
|
4.7
|
23.8
|
1.0
|
|
Reference:
S.Reich,
M.Widmann,
M.Genz,
B.M.Nestl,
B.Hauer.
Surface Loops Representing Enzyme Modifying Element in the Field of Tuning Enzyme Properties To Be Published.
Page generated: Thu Jul 25 23:34:09 2024
|