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Chlorine in PDB 4ove: X-Ray Crystal Structure of Mouse Netrin-1

Protein crystallography data

The structure of X-Ray Crystal Structure of Mouse Netrin-1, PDB code: 4ove was solved by M.Meier, D.Nikodemus, R.Reuten, T.R.Patel, G.Orriss, N.Okun, M.Koch, J.Stetefeld, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.64
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 69.754, 69.754, 334.802, 90.00, 90.00, 120.00
R / Rfree (%) 23 / 28.8

Other elements in 4ove:

The structure of X-Ray Crystal Structure of Mouse Netrin-1 also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Crystal Structure of Mouse Netrin-1 (pdb code 4ove). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the X-Ray Crystal Structure of Mouse Netrin-1, PDB code: 4ove:

Chlorine binding site 1 out of 1 in 4ove

Go back to Chlorine Binding Sites List in 4ove
Chlorine binding site 1 out of 1 in the X-Ray Crystal Structure of Mouse Netrin-1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Crystal Structure of Mouse Netrin-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl510

b:38.4
occ:0.74
N A:PHE321 3.0 50.0 1.0
CA A:PHE321 3.3 51.8 1.0
N A:CYS350 3.5 54.3 1.0
CE2 A:TYR323 3.5 39.8 1.0
CA A:ARG349 3.6 56.3 1.0
O A:CYS350 3.8 49.1 1.0
CB A:PHE321 3.9 56.4 1.0
CB A:CYS350 4.0 52.3 1.0
C A:ARG349 4.0 50.9 1.0
CD2 A:TYR323 4.1 38.0 1.0
C A:PRO320 4.1 45.1 1.0
CB A:ARG349 4.1 63.5 1.0
CD1 A:PHE321 4.2 65.0 1.0
O A:ARG348 4.3 57.7 1.0
CA A:CYS350 4.3 49.9 1.0
CA A:PRO320 4.3 42.6 1.0
C A:CYS350 4.5 47.8 1.0
CB A:PRO320 4.5 41.9 1.0
CG A:PHE321 4.5 62.4 1.0
CD A:ARG349 4.5 76.4 1.0
CZ A:TYR323 4.6 39.9 1.0
C A:PHE321 4.7 48.6 1.0
OH A:TYR323 4.7 39.9 1.0
N A:ARG349 4.8 63.0 1.0
CG A:ARG349 4.8 70.0 1.0
C A:ARG348 5.0 66.3 1.0

Reference:

M.Meier, D.Nikodemus, R.Reuten, T.R.Patel, G.Orriss, N.Okun, K.Mceleney, F.Schneiders, K.Poole, M.Koch, J.Stetefeld. Dependence Receptor Recognition By Netrin-1 To Be Published.
Page generated: Sat Dec 12 11:01:50 2020

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