Chlorine in PDB 4oyr: Competition of the Small Inhibitor PT91 with Large Fatty Acyl Substrate of the Mycobacterium Tuberculosis Enoyl-Acp Reductase Inha By Induced Substrate-Binding Loop Refolding
Enzymatic activity of Competition of the Small Inhibitor PT91 with Large Fatty Acyl Substrate of the Mycobacterium Tuberculosis Enoyl-Acp Reductase Inha By Induced Substrate-Binding Loop Refolding
All present enzymatic activity of Competition of the Small Inhibitor PT91 with Large Fatty Acyl Substrate of the Mycobacterium Tuberculosis Enoyl-Acp Reductase Inha By Induced Substrate-Binding Loop Refolding:
1.3.1.9;
Protein crystallography data
The structure of Competition of the Small Inhibitor PT91 with Large Fatty Acyl Substrate of the Mycobacterium Tuberculosis Enoyl-Acp Reductase Inha By Induced Substrate-Binding Loop Refolding, PDB code: 4oyr
was solved by
H.J.Li,
P.Pan,
C.T.Lai,
N.Liu,
M.Garcia-Diaz,
C.Simmerling,
P.J.Tonge,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.70 /
2.30
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.842,
90.653,
164.436,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.4 /
24.4
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Competition of the Small Inhibitor PT91 with Large Fatty Acyl Substrate of the Mycobacterium Tuberculosis Enoyl-Acp Reductase Inha By Induced Substrate-Binding Loop Refolding
(pdb code 4oyr). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Competition of the Small Inhibitor PT91 with Large Fatty Acyl Substrate of the Mycobacterium Tuberculosis Enoyl-Acp Reductase Inha By Induced Substrate-Binding Loop Refolding, PDB code: 4oyr:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 4oyr
Go back to
Chlorine Binding Sites List in 4oyr
Chlorine binding site 1 out
of 4 in the Competition of the Small Inhibitor PT91 with Large Fatty Acyl Substrate of the Mycobacterium Tuberculosis Enoyl-Acp Reductase Inha By Induced Substrate-Binding Loop Refolding
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Competition of the Small Inhibitor PT91 with Large Fatty Acyl Substrate of the Mycobacterium Tuberculosis Enoyl-Acp Reductase Inha By Induced Substrate-Binding Loop Refolding within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl302
b:33.5
occ:1.00
|
CL1
|
A:1US302
|
0.0
|
33.5
|
1.0
|
C16
|
A:1US302
|
1.8
|
27.4
|
1.0
|
C15
|
A:1US302
|
2.7
|
29.1
|
1.0
|
C17
|
A:1US302
|
2.8
|
25.1
|
1.0
|
O14
|
A:1US302
|
2.9
|
32.4
|
1.0
|
O5D
|
A:NAD301
|
3.4
|
41.9
|
1.0
|
CB
|
A:ALA198
|
3.5
|
39.6
|
1.0
|
O
|
A:GLY96
|
3.5
|
30.8
|
1.0
|
C2D
|
A:NAD301
|
3.6
|
35.7
|
1.0
|
C5B
|
A:NAD301
|
3.7
|
20.6
|
1.0
|
C
|
A:GLY96
|
3.8
|
32.5
|
1.0
|
CA
|
A:GLY96
|
3.8
|
35.2
|
1.0
|
O2D
|
A:NAD301
|
3.8
|
44.1
|
1.0
|
C3D
|
A:NAD301
|
3.8
|
32.0
|
1.0
|
N
|
A:GLY96
|
3.9
|
33.4
|
1.0
|
O3
|
A:NAD301
|
4.0
|
35.1
|
1.0
|
C20
|
A:1US302
|
4.0
|
31.0
|
1.0
|
C18
|
A:1US302
|
4.1
|
24.0
|
1.0
|
C5D
|
A:NAD301
|
4.2
|
33.7
|
1.0
|
C03
|
A:1US302
|
4.3
|
34.1
|
1.0
|
PN
|
A:NAD301
|
4.3
|
29.4
|
1.0
|
O5B
|
A:NAD301
|
4.5
|
33.7
|
1.0
|
C4D
|
A:NAD301
|
4.6
|
32.0
|
1.0
|
C19
|
A:1US302
|
4.6
|
25.0
|
1.0
|
N
|
A:PHE97
|
4.7
|
25.9
|
1.0
|
C
|
A:ILE95
|
4.8
|
30.2
|
1.0
|
PA
|
A:NAD301
|
4.8
|
29.6
|
1.0
|
C4B
|
A:NAD301
|
4.8
|
32.6
|
1.0
|
O3D
|
A:NAD301
|
4.8
|
34.6
|
1.0
|
O1N
|
A:NAD301
|
4.9
|
32.3
|
1.0
|
O4B
|
A:NAD301
|
4.9
|
32.7
|
1.0
|
O2A
|
A:NAD301
|
4.9
|
32.8
|
1.0
|
CA
|
A:ALA198
|
5.0
|
34.5
|
1.0
|
O13
|
A:1US302
|
5.0
|
33.1
|
1.0
|
C1D
|
A:NAD301
|
5.0
|
31.8
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 4oyr
Go back to
Chlorine Binding Sites List in 4oyr
Chlorine binding site 2 out
of 4 in the Competition of the Small Inhibitor PT91 with Large Fatty Acyl Substrate of the Mycobacterium Tuberculosis Enoyl-Acp Reductase Inha By Induced Substrate-Binding Loop Refolding
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Competition of the Small Inhibitor PT91 with Large Fatty Acyl Substrate of the Mycobacterium Tuberculosis Enoyl-Acp Reductase Inha By Induced Substrate-Binding Loop Refolding within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl302
b:39.0
occ:1.00
|
CL1
|
B:1US302
|
0.0
|
39.0
|
1.0
|
C16
|
B:1US302
|
1.8
|
36.6
|
1.0
|
C15
|
B:1US302
|
2.7
|
34.9
|
1.0
|
C17
|
B:1US302
|
2.8
|
33.6
|
1.0
|
O14
|
B:1US302
|
2.9
|
39.6
|
1.0
|
O5D
|
B:NAD301
|
3.3
|
42.7
|
1.0
|
C2D
|
B:NAD301
|
3.4
|
27.9
|
1.0
|
CB
|
B:ALA198
|
3.4
|
38.4
|
1.0
|
C3D
|
B:NAD301
|
3.5
|
39.2
|
1.0
|
O2D
|
B:NAD301
|
3.6
|
32.4
|
1.0
|
C5B
|
B:NAD301
|
3.7
|
45.5
|
1.0
|
O
|
B:GLY96
|
3.8
|
33.9
|
1.0
|
CA
|
B:GLY96
|
3.8
|
36.7
|
1.0
|
C
|
B:GLY96
|
3.9
|
36.9
|
1.0
|
N
|
B:GLY96
|
4.0
|
45.1
|
1.0
|
C20
|
B:1US302
|
4.0
|
33.6
|
1.0
|
C18
|
B:1US302
|
4.1
|
31.1
|
1.0
|
C5D
|
B:NAD301
|
4.1
|
38.6
|
1.0
|
O3
|
B:NAD301
|
4.2
|
43.8
|
1.0
|
C03
|
B:1US302
|
4.3
|
39.6
|
1.0
|
PN
|
B:NAD301
|
4.4
|
33.2
|
1.0
|
C4D
|
B:NAD301
|
4.4
|
39.6
|
1.0
|
O5B
|
B:NAD301
|
4.5
|
49.4
|
1.0
|
O3D
|
B:NAD301
|
4.5
|
42.5
|
1.0
|
C19
|
B:1US302
|
4.6
|
33.6
|
1.0
|
N
|
B:PHE97
|
4.8
|
42.2
|
1.0
|
C4B
|
B:NAD301
|
4.8
|
36.0
|
1.0
|
CE
|
B:MET161
|
4.8
|
30.8
|
1.0
|
C1D
|
B:NAD301
|
4.8
|
34.0
|
1.0
|
PA
|
B:NAD301
|
4.8
|
37.0
|
1.0
|
O13
|
B:1US302
|
4.8
|
34.8
|
1.0
|
O4B
|
B:NAD301
|
4.8
|
36.7
|
1.0
|
CA
|
B:ALA198
|
4.9
|
38.7
|
1.0
|
O2A
|
B:NAD301
|
4.9
|
40.9
|
1.0
|
C
|
B:ILE95
|
4.9
|
45.2
|
1.0
|
O1N
|
B:NAD301
|
4.9
|
31.2
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 4oyr
Go back to
Chlorine Binding Sites List in 4oyr
Chlorine binding site 3 out
of 4 in the Competition of the Small Inhibitor PT91 with Large Fatty Acyl Substrate of the Mycobacterium Tuberculosis Enoyl-Acp Reductase Inha By Induced Substrate-Binding Loop Refolding
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Competition of the Small Inhibitor PT91 with Large Fatty Acyl Substrate of the Mycobacterium Tuberculosis Enoyl-Acp Reductase Inha By Induced Substrate-Binding Loop Refolding within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl302
b:48.8
occ:1.00
|
CL1
|
C:1US302
|
0.0
|
48.8
|
1.0
|
C16
|
C:1US302
|
1.8
|
38.2
|
1.0
|
C17
|
C:1US302
|
2.7
|
40.6
|
1.0
|
C15
|
C:1US302
|
2.8
|
46.8
|
1.0
|
O14
|
C:1US302
|
3.0
|
47.5
|
1.0
|
O5D
|
C:NAD301
|
3.3
|
52.4
|
1.0
|
O
|
C:GLY96
|
3.4
|
39.7
|
1.0
|
CB
|
C:ALA198
|
3.4
|
49.4
|
1.0
|
CA
|
C:GLY96
|
3.6
|
37.2
|
1.0
|
C
|
C:GLY96
|
3.7
|
40.3
|
1.0
|
C2D
|
C:NAD301
|
3.7
|
33.0
|
1.0
|
C5B
|
C:NAD301
|
3.7
|
33.1
|
1.0
|
C3D
|
C:NAD301
|
3.8
|
33.4
|
1.0
|
N
|
C:GLY96
|
3.9
|
43.0
|
1.0
|
O2D
|
C:NAD301
|
3.9
|
33.5
|
1.0
|
C18
|
C:1US302
|
4.1
|
45.2
|
1.0
|
C20
|
C:1US302
|
4.1
|
49.2
|
1.0
|
C5D
|
C:NAD301
|
4.2
|
55.2
|
1.0
|
O3
|
C:NAD301
|
4.2
|
52.9
|
1.0
|
O5B
|
C:NAD301
|
4.3
|
34.5
|
1.0
|
PN
|
C:NAD301
|
4.4
|
36.3
|
1.0
|
C03
|
C:1US302
|
4.4
|
37.3
|
1.0
|
O
|
C:HOH427
|
4.6
|
39.7
|
1.0
|
C4D
|
C:NAD301
|
4.6
|
53.2
|
1.0
|
C19
|
C:1US302
|
4.6
|
47.9
|
1.0
|
N
|
C:PHE97
|
4.6
|
38.1
|
1.0
|
PA
|
C:NAD301
|
4.7
|
41.6
|
1.0
|
O2A
|
C:NAD301
|
4.7
|
51.3
|
1.0
|
O3D
|
C:NAD301
|
4.7
|
37.0
|
1.0
|
O4B
|
C:NAD301
|
4.7
|
34.3
|
1.0
|
C4B
|
C:NAD301
|
4.8
|
29.4
|
1.0
|
C
|
C:ILE95
|
4.9
|
44.7
|
1.0
|
CA
|
C:ALA198
|
4.9
|
49.2
|
1.0
|
CD1
|
C:ILE202
|
5.0
|
52.8
|
1.0
|
O1N
|
C:NAD301
|
5.0
|
49.0
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 4oyr
Go back to
Chlorine Binding Sites List in 4oyr
Chlorine binding site 4 out
of 4 in the Competition of the Small Inhibitor PT91 with Large Fatty Acyl Substrate of the Mycobacterium Tuberculosis Enoyl-Acp Reductase Inha By Induced Substrate-Binding Loop Refolding
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Competition of the Small Inhibitor PT91 with Large Fatty Acyl Substrate of the Mycobacterium Tuberculosis Enoyl-Acp Reductase Inha By Induced Substrate-Binding Loop Refolding within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl302
b:78.3
occ:1.00
|
CL1
|
D:1US302
|
0.0
|
78.3
|
1.0
|
C16
|
D:1US302
|
1.8
|
59.7
|
1.0
|
C17
|
D:1US302
|
2.7
|
52.0
|
1.0
|
C15
|
D:1US302
|
2.8
|
68.6
|
1.0
|
O14
|
D:1US302
|
3.0
|
75.2
|
1.0
|
O5D
|
D:NAD301
|
3.2
|
77.0
|
1.0
|
O5B
|
D:NAD301
|
3.2
|
70.1
|
1.0
|
C3D
|
D:NAD301
|
3.5
|
64.1
|
1.0
|
C5B
|
D:NAD301
|
3.5
|
64.5
|
1.0
|
C2D
|
D:NAD301
|
3.5
|
57.5
|
1.0
|
O
|
D:GLY96
|
3.6
|
50.8
|
1.0
|
CB
|
D:ALA198
|
3.6
|
62.5
|
1.0
|
O2D
|
D:NAD301
|
3.7
|
65.0
|
1.0
|
CA
|
D:GLY96
|
3.8
|
42.8
|
1.0
|
C
|
D:GLY96
|
3.9
|
51.9
|
1.0
|
N
|
D:GLY96
|
3.9
|
49.2
|
1.0
|
C18
|
D:1US302
|
4.1
|
57.9
|
1.0
|
C20
|
D:1US302
|
4.1
|
65.4
|
1.0
|
C5D
|
D:NAD301
|
4.1
|
71.5
|
1.0
|
O3
|
D:NAD301
|
4.3
|
79.1
|
1.0
|
PN
|
D:NAD301
|
4.3
|
67.9
|
1.0
|
C4D
|
D:NAD301
|
4.3
|
66.9
|
1.0
|
PA
|
D:NAD301
|
4.4
|
67.4
|
1.0
|
O3D
|
D:NAD301
|
4.4
|
61.3
|
1.0
|
C03
|
D:1US302
|
4.4
|
70.5
|
1.0
|
C19
|
D:1US302
|
4.6
|
65.6
|
1.0
|
C4B
|
D:NAD301
|
4.6
|
66.6
|
1.0
|
C
|
D:ILE95
|
4.8
|
51.5
|
1.0
|
N
|
D:PHE97
|
4.8
|
60.6
|
1.0
|
O1N
|
D:NAD301
|
4.8
|
0.0
|
1.0
|
O2A
|
D:NAD301
|
4.8
|
70.3
|
1.0
|
O4B
|
D:NAD301
|
4.8
|
69.6
|
1.0
|
C1D
|
D:NAD301
|
4.9
|
65.4
|
1.0
|
O13
|
D:1US302
|
5.0
|
56.0
|
1.0
|
|
Reference:
H.J.Li,
C.T.Lai,
P.Pan,
W.Yu,
N.Liu,
G.R.Bommineni,
M.Garcia-Diaz,
C.Simmerling,
P.J.Tonge.
A Structural and Energetic Model For the Slow-Onset Inhibition of the Mycobacterium Tuberculosis Enoyl-Acp Reductase Inha. Acs Chem.Biol. V. 9 986 2014.
ISSN: ESSN 1554-8937
PubMed: 24527857
DOI: 10.1021/CB400896G
Page generated: Thu Jul 25 23:42:06 2024
|