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Chlorine in PDB 4p35: Crystal Structure of Dj-1 with Zinc(II) Bound (Crystal I)

Protein crystallography data

The structure of Crystal Structure of Dj-1 with Zinc(II) Bound (Crystal I), PDB code: 4p35 was solved by S.Tashiro, C.-X.Wu, Q.Q.Hoang, J.M.M.Caaveiro, K.Tsumoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.60 / 1.75
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 75.130, 75.130, 75.540, 90.00, 90.00, 120.00
R / Rfree (%) 14.2 / 17.1

Other elements in 4p35:

The structure of Crystal Structure of Dj-1 with Zinc(II) Bound (Crystal I) also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Dj-1 with Zinc(II) Bound (Crystal I) (pdb code 4p35). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Dj-1 with Zinc(II) Bound (Crystal I), PDB code: 4p35:

Chlorine binding site 1 out of 1 in 4p35

Go back to Chlorine Binding Sites List in 4p35
Chlorine binding site 1 out of 1 in the Crystal Structure of Dj-1 with Zinc(II) Bound (Crystal I)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Dj-1 with Zinc(II) Bound (Crystal I) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:26.8
occ:1.00
O A:HOH350 3.1 14.8 1.0
N A:ASN76 3.3 17.2 1.0
NH1 A:ARG48 3.3 13.4 1.0
O A:HOH344 3.4 17.8 1.0
CA A:GLY75 3.7 14.4 1.0
OD1 A:ASN76 3.8 23.8 0.5
O A:HOH430 4.0 22.8 0.5
C A:GLY75 4.0 15.9 1.0
CB A:ASN76 4.0 17.7 0.5
CG A:ASN76 4.0 20.5 0.5
CB A:ASN76 4.2 19.9 0.5
O A:HOH377 4.2 41.2 1.0
CA A:ASN76 4.3 16.6 0.5
CZ A:ARG48 4.3 13.2 1.0
CA A:ASN76 4.3 17.5 0.5
NH2 A:ARG48 4.3 14.8 1.0
CB A:SER47 4.6 12.9 1.0
ND2 A:ASN76 4.7 21.2 0.5
N A:GLY75 4.8 13.9 1.0
OG A:SER47 4.8 13.0 1.0
CG A:GLU15 5.0 11.4 1.0

Reference:

S.Tashiro, J.M.Caaveiro, C.X.Wu, Q.Q.Hoang, K.Tsumoto. Thermodynamic and Structural Characterization of the Specific Binding of Zn(II) to Human Protein Dj-1. Biochemistry V. 53 2218 2014.
ISSN: ISSN 1520-4995
PubMed: 24697266
DOI: 10.1021/BI500294H
Page generated: Sat Dec 12 11:02:23 2020

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