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Chlorine in PDB 4p3l: Crystal Structure of A Trap Periplasmic Solute Binding Protein From Chromohalobacter Salexigens Dsm 3043 (CSAL_2479), Target Efi-510085, with Bound Glucuronate, Spg P6122

Protein crystallography data

The structure of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Chromohalobacter Salexigens Dsm 3043 (CSAL_2479), Target Efi-510085, with Bound Glucuronate, Spg P6122, PDB code: 4p3l was solved by M.W.Vetting, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, M.Stead, J.D.Attonito, A.Scott Glenn, S.Chowdhury, B.Evans, B.Hillerich, J.Love, R.D.Seidel, K.L.Whalen, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative(Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.09 / 1.80
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 160.657, 160.657, 58.117, 90.00, 90.00, 120.00
R / Rfree (%) 14.3 / 16.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Chromohalobacter Salexigens Dsm 3043 (CSAL_2479), Target Efi-510085, with Bound Glucuronate, Spg P6122 (pdb code 4p3l). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Chromohalobacter Salexigens Dsm 3043 (CSAL_2479), Target Efi-510085, with Bound Glucuronate, Spg P6122, PDB code: 4p3l:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4p3l

Go back to Chlorine Binding Sites List in 4p3l
Chlorine binding site 1 out of 2 in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Chromohalobacter Salexigens Dsm 3043 (CSAL_2479), Target Efi-510085, with Bound Glucuronate, Spg P6122


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Chromohalobacter Salexigens Dsm 3043 (CSAL_2479), Target Efi-510085, with Bound Glucuronate, Spg P6122 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:18.0
occ:1.00
H A:GLN80 2.5 18.0 1.0
H A:TYR200 2.6 17.7 1.0
HB2 A:ASP79 2.9 23.9 1.0
HA A:ALA199 3.1 22.3 1.0
O A:HOH645 3.1 28.0 1.0
O A:HOH614 3.2 18.9 1.0
O A:HOH624 3.2 17.7 1.0
HD11 A:ILE41 3.3 18.7 1.0
N A:GLN80 3.4 15.0 1.0
HB3 A:GLN80 3.4 17.0 1.0
N A:TYR200 3.5 14.7 1.0
HB2 A:GLN80 3.5 17.0 1.0
HB1 A:ALA199 3.5 26.8 1.0
HB2 A:TYR200 3.6 18.4 1.0
HD12 A:ILE41 3.6 18.7 1.0
HD3 A:PRO81 3.7 23.4 1.0
HB3 A:TYR200 3.7 18.4 1.0
CB A:ASP79 3.8 19.9 1.0
CD1 A:ILE41 3.8 15.6 1.0
CB A:GLN80 3.8 14.2 1.0
CA A:ALA199 3.8 18.6 1.0
HA A:ASP79 3.9 21.9 1.0
HD2 A:PRO81 3.9 23.4 1.0
HD13 A:ILE41 3.9 18.7 1.0
CB A:TYR200 4.0 15.4 1.0
CB A:ALA199 4.1 22.3 1.0
C A:ALA199 4.2 17.2 1.0
CA A:ASP79 4.2 18.3 1.0
CA A:GLN80 4.2 14.4 1.0
HB3 A:ASP79 4.2 23.9 1.0
CD A:PRO81 4.2 19.5 1.0
HB2 A:ALA199 4.2 26.8 1.0
C A:ASP79 4.3 15.6 1.0
HE21 A:GLN80 4.3 21.5 1.0
CA A:TYR200 4.4 16.3 1.0
O A:HOH620 4.5 18.0 1.0
H A:GLY201 4.5 21.9 1.0
HH21 A:ARG177 4.7 18.9 1.0
CG A:ASP79 4.7 31.8 1.0
O A:HOH736 4.8 39.6 1.0
O4 A:BDP403 4.8 17.0 1.0
O6A A:BDP403 4.8 16.1 1.0
HA A:GLN80 4.8 17.3 1.0
HH22 A:ARG177 4.9 18.9 1.0
HB3 A:ALA199 4.9 26.8 1.0

Chlorine binding site 2 out of 2 in 4p3l

Go back to Chlorine Binding Sites List in 4p3l
Chlorine binding site 2 out of 2 in the Crystal Structure of A Trap Periplasmic Solute Binding Protein From Chromohalobacter Salexigens Dsm 3043 (CSAL_2479), Target Efi-510085, with Bound Glucuronate, Spg P6122


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Trap Periplasmic Solute Binding Protein From Chromohalobacter Salexigens Dsm 3043 (CSAL_2479), Target Efi-510085, with Bound Glucuronate, Spg P6122 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:15.9
occ:1.00
H A:TYR219 2.5 15.7 1.0
H A:ALA155 2.7 15.2 1.0
HB2 A:ASN218 2.8 15.2 1.0
HA3 A:GLY154 3.0 14.9 1.0
HD2 A:TYR219 3.0 20.9 1.0
O A:HOH579 3.2 28.1 1.0
HB2 A:TYR219 3.3 19.6 1.0
N A:TYR219 3.4 13.1 1.0
HG22 A:VAL283 3.4 21.9 1.0
N A:ALA155 3.5 12.6 1.0
CB A:ASN218 3.6 12.6 1.0
HD3 A:PRO220 3.6 18.6 1.0
HA A:ASN218 3.6 17.9 1.0
HZ2 A:TRP279 3.7 15.6 1.0
HB3 A:ASN218 3.8 15.2 1.0
HG21 A:VAL283 3.8 21.9 1.0
O A:ALA155 3.8 16.3 1.0
HG13 A:VAL283 3.8 22.4 1.0
CA A:GLY154 3.8 12.4 1.0
CD2 A:TYR219 3.9 17.4 1.0
HD2 A:PRO220 3.9 18.6 1.0
CA A:ASN218 4.0 14.9 1.0
CG2 A:VAL283 4.0 18.3 1.0
CB A:TYR219 4.1 16.3 1.0
HA2 A:GLY154 4.1 14.9 1.0
HE1 A:TRP279 4.1 16.5 1.0
HG11 A:VAL283 4.2 22.4 1.0
C A:ASN218 4.2 13.1 1.0
CD A:PRO220 4.2 15.5 1.0
C A:GLY154 4.2 15.9 1.0
O A:HOH608 4.3 15.1 1.0
HB3 A:ALA155 4.3 20.9 1.0
CA A:TYR219 4.3 14.4 1.0
O A:HOH677 4.3 31.5 1.0
CG1 A:VAL283 4.4 18.6 1.0
CG A:TYR219 4.4 14.7 1.0
CZ2 A:TRP279 4.5 13.0 1.0
CA A:ALA155 4.5 12.8 1.0
C A:ALA155 4.6 14.8 1.0
NE1 A:TRP279 4.8 13.8 1.0
HG23 A:VAL283 4.8 21.9 1.0
CG A:ASN218 4.8 12.6 1.0
HB3 A:TYR219 4.8 19.6 1.0
O A:HOH781 4.8 39.7 1.0
CB A:VAL283 4.9 13.5 1.0
CB A:ALA155 4.9 17.4 1.0
CE2 A:TYR219 4.9 16.9 1.0
HE2 A:TYR219 4.9 20.3 1.0
N A:GLY154 4.9 12.3 1.0
O A:SER153 5.0 13.0 0.5
HA A:TYR219 5.0 17.3 1.0
CE2 A:TRP279 5.0 14.3 1.0

Reference:

M.W.Vetting, N.F.Al Obaidi, L.L.Morisco, S.R.Wasserman, M.Stead, J.D.Attonito, A.Scott Glenn, S.Chowdhury, B.Evans, B.Hillerich, J.Love, R.D.Seidel, K.L.Whalen, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of A Trap Periplasmic Solute Binding Protein From Chromohalobacter Salexigens Dsm 3043 (CSAL_2479), Target Efi-510085, with Bound Glucuronate, Spg P6122 To Be Published.
Page generated: Thu Jul 25 23:47:51 2024

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