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Chlorine in PDB 4p4f: X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40

Enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40

All present enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40:
3.4.17.21;

Protein crystallography data

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40, PDB code: 4p4f was solved by C.Barinka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.86
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 101.766, 130.612, 159.118, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 17.6

Other elements in 4p4f:

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40 (pdb code 4p4f). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40, PDB code: 4p4f:

Chlorine binding site 1 out of 1 in 4p4f

Go back to Chlorine Binding Sites List in 4p4f
Chlorine binding site 1 out of 1 in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Phosphoramidate Inhibitor Nc-2-40 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl819

b:23.0
occ:1.00
 O A:HOH1024 3.1 25.2 1.0
ND2 A:ASN451 3.2 18.4 1.0
NE A:ARG534 3.3 22.6 1.0
O A:HOH1457 3.3 21.0 0.7
N A:ASP453 3.3 20.1 1.0
NH1 A:ARG534 3.5 20.9 1.0
CB A:ARG534 3.7 18.8 1.0
NH2 A:ARG580 3.8 17.2 1.0
CZ A:ARG534 3.8 25.5 1.0
CB A:ASP453 3.9 18.8 1.0
CB A:ASN451 3.9 18.2 1.0
CA A:ASP453 4.0 19.8 1.0
CG A:ASN451 4.0 18.1 1.0
N A:ALA452 4.1 20.0 1.0
C A:ASN451 4.2 19.6 1.0
CA A:ALA452 4.2 20.5 1.0
C A:ALA452 4.2 20.6 1.0
C A:ASP453 4.3 21.0 1.0
CD A:ARG534 4.3 22.8 1.0
O A:ASN451 4.3 19.3 1.0
O A:ASP453 4.4 22.4 1.0
CG A:ARG534 4.4 22.4 1.0
CZ A:ARG580 4.6 21.3 1.0
CA A:ASN451 4.7 19.1 1.0
O A:SER454 4.7 20.9 0.8
CA A:ARG534 4.7 19.0 1.0
O A:ALA535 4.8 21.1 1.0
N A:ALA535 4.8 20.1 1.0
CD A:ARG536 4.9 25.6 1.0
NE A:ARG580 5.0 19.1 1.0

Reference:

C.Barinka, C.Barinka. N/A N/A.
Page generated: Sat Dec 12 11:02:36 2020

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