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Chlorine in PDB 4pm4: Structure of A Putative Periplasmic Iron Siderophore Binding Protein (RV0265C) From Mycobacterium Tuberculosis H37RV

Protein crystallography data

The structure of Structure of A Putative Periplasmic Iron Siderophore Binding Protein (RV0265C) From Mycobacterium Tuberculosis H37RV, PDB code: 4pm4 was solved by M.A.Arbing, S.Chan, N.Tran, E.Kuo, J.Lu, L.R.Harris, T.T.Zhou, D.Eisenberg, Tb Structural Genomics Consortium (Tbsgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.20 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 69.551, 65.434, 72.330, 90.00, 116.41, 90.00
R / Rfree (%) 20.3 / 25.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of A Putative Periplasmic Iron Siderophore Binding Protein (RV0265C) From Mycobacterium Tuberculosis H37RV (pdb code 4pm4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of A Putative Periplasmic Iron Siderophore Binding Protein (RV0265C) From Mycobacterium Tuberculosis H37RV, PDB code: 4pm4:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4pm4

Go back to Chlorine Binding Sites List in 4pm4
Chlorine binding site 1 out of 3 in the Structure of A Putative Periplasmic Iron Siderophore Binding Protein (RV0265C) From Mycobacterium Tuberculosis H37RV


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A Putative Periplasmic Iron Siderophore Binding Protein (RV0265C) From Mycobacterium Tuberculosis H37RV within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:50.4
occ:1.00
HB2 A:ASP150 2.6 51.5 1.0
H A:ARG151 2.7 34.9 1.0
H A:ASP150 3.1 36.4 1.0
HB2 A:ARG151 3.3 38.2 1.0
N A:ARG151 3.4 29.1 1.0
CB A:ASP150 3.5 42.9 1.0
N A:ASP150 3.7 30.3 1.0
O A:ALA148 3.9 37.4 1.0
C A:ALA148 3.9 36.6 1.0
HB3 A:ARG151 3.9 38.2 1.0
CB A:ARG151 4.0 31.9 1.0
CA A:ASP150 4.0 35.9 1.0
HB3 A:ASP150 4.1 51.5 1.0
O A:PHE147 4.1 30.0 1.0
C A:ASP150 4.2 32.8 1.0
CA A:ALA148 4.2 38.3 1.0
CA A:ARG151 4.3 28.0 1.0
CG A:ASP150 4.3 50.0 1.0
OD2 A:ASP150 4.3 53.7 1.0
N A:ALA149 4.4 32.0 1.0
H A:ALA149 4.6 38.5 1.0
HA A:ARG151 4.7 33.6 1.0
C A:ALA149 4.7 29.9 1.0
HA A:ASP150 4.9 43.1 1.0
C A:PHE147 4.9 29.3 1.0

Chlorine binding site 2 out of 3 in 4pm4

Go back to Chlorine Binding Sites List in 4pm4
Chlorine binding site 2 out of 3 in the Structure of A Putative Periplasmic Iron Siderophore Binding Protein (RV0265C) From Mycobacterium Tuberculosis H37RV


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of A Putative Periplasmic Iron Siderophore Binding Protein (RV0265C) From Mycobacterium Tuberculosis H37RV within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:58.5
occ:1.00
HH22 A:ARG140 2.5 44.1 1.0
HH12 A:ARG140 3.0 41.5 1.0
HD2 A:LYS136 3.3 30.2 1.0
NH2 A:ARG140 3.4 36.8 1.0
HZ2 A:LYS136 3.6 35.7 1.0
HD3 A:LYS136 3.7 30.2 1.0
NH1 A:ARG140 3.7 34.6 1.0
CD A:LYS136 3.9 25.2 1.0
HH21 A:ARG140 4.0 44.1 1.0
HZ3 A:LYS136 4.0 35.7 1.0
CZ A:ARG140 4.0 34.1 1.0
NZ A:LYS136 4.2 29.8 1.0
HH11 A:ARG140 4.5 41.5 1.0
CE A:LYS136 4.7 24.9 1.0
HB3 A:LYS136 4.7 34.3 1.0
HB2 A:LYS136 4.7 34.3 1.0
HZ1 A:LYS136 5.0 35.7 1.0

Chlorine binding site 3 out of 3 in 4pm4

Go back to Chlorine Binding Sites List in 4pm4
Chlorine binding site 3 out of 3 in the Structure of A Putative Periplasmic Iron Siderophore Binding Protein (RV0265C) From Mycobacterium Tuberculosis H37RV


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of A Putative Periplasmic Iron Siderophore Binding Protein (RV0265C) From Mycobacterium Tuberculosis H37RV within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:63.1
occ:1.00
HH21 A:ARG169 2.4 72.4 1.0
HH22 B:ARG140 2.6 54.7 1.0
HZ3 B:LYS136 2.6 52.4 1.0
HZ2 B:LYS136 2.7 52.4 1.0
HE A:ARG169 2.8 68.2 1.0
NH2 A:ARG169 2.8 60.4 1.0
NZ B:LYS136 3.1 43.6 1.0
NE A:ARG169 3.2 56.9 1.0
CZ A:ARG169 3.3 60.2 1.0
NH2 B:ARG140 3.3 45.6 1.0
HH22 A:ARG169 3.4 72.4 1.0
HD3 B:LYS136 3.4 47.9 1.0
HH21 B:ARG140 3.4 54.7 1.0
HD2 B:LYS136 3.5 47.9 1.0
HZ1 B:LYS136 3.7 52.4 1.0
CD B:LYS136 3.8 39.9 1.0
CE B:LYS136 4.0 39.9 1.0
HH12 B:ARG140 4.3 52.1 1.0
CD A:ARG169 4.3 52.1 1.0
HG2 A:ARG169 4.3 58.8 1.0
NH1 A:ARG169 4.4 58.9 1.0
HD3 A:ARG169 4.4 62.6 1.0
CZ B:ARG140 4.5 40.3 1.0
HE2 B:LYS136 4.6 47.8 1.0
HE3 B:LYS136 4.7 47.8 1.0
HH12 A:ARG169 4.7 70.7 1.0
OD2 B:ASP160 4.8 47.4 1.0
CG A:ARG169 4.8 49.0 1.0
NH1 B:ARG140 4.8 43.4 1.0
HH11 A:ARG169 4.9 70.7 1.0
HG3 A:ARG169 4.9 58.8 1.0

Reference:

M.A.Arbing, S.Chan, N.Tran, E.Kuo, J.Lu, L.R.Harris, T.T.Zhou, D.Eisenberg. Structure of A Putative Periplasmic Iron Siderophore Binding Protein (RV0265C) From Mycobacterium Tuberculosis H37RV To Be Published.
Page generated: Sat Dec 12 11:03:41 2020

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