Chlorine in PDB 4pnv: E. Coli Sliding Clamp Apo-Crystal in P21 Space Group with Larger Cell Dimensions
Enzymatic activity of E. Coli Sliding Clamp Apo-Crystal in P21 Space Group with Larger Cell Dimensions
All present enzymatic activity of E. Coli Sliding Clamp Apo-Crystal in P21 Space Group with Larger Cell Dimensions:
2.7.7.7;
Protein crystallography data
The structure of E. Coli Sliding Clamp Apo-Crystal in P21 Space Group with Larger Cell Dimensions, PDB code: 4pnv
was solved by
Z.Yin,
A.J.Oakley,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
27.55 /
1.86
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
80.138,
70.257,
84.469,
90.00,
114.67,
90.00
|
R / Rfree (%)
|
18.3 /
23.4
|
Other elements in 4pnv:
The structure of E. Coli Sliding Clamp Apo-Crystal in P21 Space Group with Larger Cell Dimensions also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the E. Coli Sliding Clamp Apo-Crystal in P21 Space Group with Larger Cell Dimensions
(pdb code 4pnv). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
E. Coli Sliding Clamp Apo-Crystal in P21 Space Group with Larger Cell Dimensions, PDB code: 4pnv:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 4pnv
Go back to
Chlorine Binding Sites List in 4pnv
Chlorine binding site 1 out
of 4 in the E. Coli Sliding Clamp Apo-Crystal in P21 Space Group with Larger Cell Dimensions
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of E. Coli Sliding Clamp Apo-Crystal in P21 Space Group with Larger Cell Dimensions within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl402
b:22.1
occ:1.00
|
O
|
A:HOH579
|
3.0
|
28.6
|
1.0
|
O
|
A:HOH891
|
3.0
|
22.4
|
1.0
|
N
|
A:GLU6
|
3.2
|
15.6
|
1.0
|
NE2
|
A:GLN61
|
3.4
|
20.9
|
1.0
|
ND1
|
A:HIS9
|
3.6
|
25.9
|
1.0
|
CG
|
A:GLU6
|
3.7
|
17.3
|
1.0
|
CA
|
A:VAL5
|
3.8
|
15.2
|
1.0
|
CG1
|
A:VAL5
|
3.9
|
15.8
|
1.0
|
CB
|
A:GLU6
|
3.9
|
16.6
|
1.0
|
C
|
A:VAL5
|
4.0
|
15.4
|
1.0
|
CG2
|
A:VAL60
|
4.1
|
20.2
|
1.0
|
CD
|
A:GLU6
|
4.1
|
18.3
|
1.0
|
CA
|
A:GLU6
|
4.2
|
15.8
|
1.0
|
O
|
A:HOH504
|
4.2
|
15.2
|
1.0
|
CE1
|
A:HIS9
|
4.3
|
26.4
|
1.0
|
CG
|
A:GLN61
|
4.3
|
20.7
|
1.0
|
CB
|
A:VAL5
|
4.4
|
15.5
|
1.0
|
CD
|
A:GLN61
|
4.4
|
20.8
|
1.0
|
OE2
|
A:GLU6
|
4.4
|
19.1
|
1.0
|
O
|
A:THR4
|
4.5
|
15.3
|
1.0
|
CG
|
A:HIS9
|
4.6
|
24.8
|
1.0
|
OE1
|
A:GLU6
|
4.6
|
19.6
|
1.0
|
CG2
|
A:VAL5
|
4.8
|
15.9
|
1.0
|
CB
|
A:HIS9
|
4.8
|
23.6
|
1.0
|
O
|
A:HOH689
|
4.8
|
21.9
|
1.0
|
O
|
A:HOH775
|
4.9
|
23.2
|
1.0
|
N
|
A:VAL5
|
4.9
|
15.2
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 4pnv
Go back to
Chlorine Binding Sites List in 4pnv
Chlorine binding site 2 out
of 4 in the E. Coli Sliding Clamp Apo-Crystal in P21 Space Group with Larger Cell Dimensions
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of E. Coli Sliding Clamp Apo-Crystal in P21 Space Group with Larger Cell Dimensions within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl406
b:41.1
occ:1.00
|
O
|
A:HOH561
|
2.7
|
13.2
|
1.0
|
O
|
B:HOH517
|
2.8
|
15.3
|
1.0
|
O
|
A:HOH781
|
2.9
|
36.1
|
1.0
|
NH1
|
B:ARG269
|
2.9
|
11.6
|
1.0
|
NH2
|
B:ARG269
|
3.5
|
11.6
|
1.0
|
CB
|
B:GLN265
|
3.6
|
15.5
|
1.0
|
CZ
|
B:ARG269
|
3.7
|
11.7
|
1.0
|
O
|
A:HOH881
|
3.7
|
35.8
|
1.0
|
CD
|
A:PRO83
|
4.0
|
13.4
|
1.0
|
CB
|
A:PRO83
|
4.1
|
13.6
|
1.0
|
O
|
B:HOH613
|
4.1
|
13.9
|
1.0
|
CG
|
A:PRO83
|
4.1
|
13.7
|
1.0
|
CD2
|
B:LEU262
|
4.2
|
20.4
|
1.0
|
O
|
A:HOH730
|
4.2
|
26.9
|
1.0
|
CG
|
B:GLN265
|
4.3
|
17.6
|
1.0
|
O
|
A:HOH859
|
4.3
|
38.0
|
1.0
|
N
|
A:PRO83
|
4.5
|
13.2
|
1.0
|
O
|
A:HOH650
|
4.5
|
24.8
|
1.0
|
CA
|
A:PRO83
|
4.7
|
13.9
|
1.0
|
O
|
A:GLY81
|
4.9
|
11.9
|
1.0
|
O
|
A:HOH565
|
4.9
|
19.7
|
1.0
|
CA
|
B:GLN265
|
4.9
|
13.9
|
1.0
|
NE
|
B:ARG269
|
5.0
|
11.3
|
1.0
|
C
|
B:GLN265
|
5.0
|
12.3
|
1.0
|
O
|
B:LEU262
|
5.0
|
14.0
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 4pnv
Go back to
Chlorine Binding Sites List in 4pnv
Chlorine binding site 3 out
of 4 in the E. Coli Sliding Clamp Apo-Crystal in P21 Space Group with Larger Cell Dimensions
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of E. Coli Sliding Clamp Apo-Crystal in P21 Space Group with Larger Cell Dimensions within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl407
b:61.7
occ:1.00
|
O
|
B:GLU287
|
2.7
|
20.1
|
1.0
|
O
|
B:HOH786
|
2.9
|
45.4
|
1.0
|
OG
|
B:SER286
|
2.9
|
17.8
|
1.0
|
O
|
B:HOH595
|
3.0
|
32.4
|
1.0
|
N
|
B:GLU287
|
3.4
|
19.4
|
1.0
|
CB
|
B:SER286
|
3.6
|
17.9
|
1.0
|
C
|
B:GLU287
|
3.6
|
20.1
|
1.0
|
CB
|
B:GLN289
|
3.7
|
20.3
|
1.0
|
C
|
B:SER286
|
3.8
|
18.7
|
1.0
|
CA
|
B:GLU287
|
3.8
|
20.9
|
1.0
|
CB
|
B:GLU287
|
4.1
|
22.9
|
1.0
|
CA
|
B:SER286
|
4.3
|
17.9
|
1.0
|
O
|
B:SER286
|
4.3
|
17.7
|
1.0
|
CD
|
B:GLN289
|
4.5
|
23.6
|
1.0
|
N
|
B:GLN289
|
4.6
|
18.5
|
1.0
|
OE1
|
B:GLN289
|
4.6
|
26.1
|
1.0
|
CG
|
B:GLN289
|
4.7
|
22.1
|
1.0
|
CA
|
B:GLN289
|
4.8
|
18.8
|
1.0
|
N
|
B:ASN288
|
4.8
|
20.0
|
1.0
|
NE2
|
B:GLN289
|
4.9
|
24.2
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 4pnv
Go back to
Chlorine Binding Sites List in 4pnv
Chlorine binding site 4 out
of 4 in the E. Coli Sliding Clamp Apo-Crystal in P21 Space Group with Larger Cell Dimensions
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of E. Coli Sliding Clamp Apo-Crystal in P21 Space Group with Larger Cell Dimensions within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl408
b:48.5
occ:1.00
|
O
|
B:HOH958
|
2.6
|
36.5
|
1.0
|
O
|
B:HOH706
|
2.9
|
24.1
|
1.0
|
O
|
B:GLN16
|
3.2
|
23.5
|
1.0
|
NH2
|
B:ARG205
|
3.5
|
27.3
|
1.0
|
CZ
|
B:ARG205
|
3.5
|
27.3
|
1.0
|
CZ
|
B:PHE230
|
3.6
|
21.1
|
1.0
|
CE2
|
B:PHE230
|
3.6
|
22.1
|
1.0
|
CA
|
B:GLN16
|
3.6
|
24.3
|
1.0
|
NH1
|
B:ARG205
|
3.6
|
28.9
|
1.0
|
CA
|
B:MET206
|
3.8
|
22.5
|
1.0
|
C
|
B:GLN16
|
3.8
|
23.8
|
1.0
|
CB
|
B:GLN16
|
3.9
|
26.0
|
1.0
|
CB
|
B:MET206
|
3.9
|
22.6
|
1.0
|
N
|
B:MET206
|
4.0
|
22.1
|
1.0
|
CG
|
B:GLN16
|
4.1
|
26.3
|
1.0
|
O
|
B:ARG205
|
4.1
|
22.4
|
1.0
|
C
|
B:ARG205
|
4.2
|
22.2
|
1.0
|
NE
|
B:ARG205
|
4.2
|
26.1
|
1.0
|
CE1
|
B:PHE230
|
4.3
|
21.4
|
1.0
|
CD2
|
B:PHE230
|
4.3
|
21.4
|
1.0
|
OE1
|
B:GLU202
|
4.4
|
18.8
|
1.0
|
CG
|
B:ARG205
|
4.4
|
24.7
|
1.0
|
CB
|
B:ARG205
|
4.6
|
23.4
|
1.0
|
O
|
B:HOH824
|
4.7
|
35.5
|
1.0
|
CD1
|
B:PHE230
|
4.9
|
21.0
|
1.0
|
N
|
B:GLN16
|
4.9
|
24.7
|
1.0
|
CG
|
B:PHE230
|
4.9
|
21.1
|
1.0
|
CD
|
B:ARG205
|
4.9
|
25.4
|
1.0
|
O
|
B:GLU202
|
4.9
|
14.8
|
1.0
|
|
Reference:
Z.Yin,
A.J.Oakley.
Reaching Beyond the Anchor Site: Inhibitor Design Mimicking the Mechanism of Linear Motif Recognition By the E. Coli Sliding Clamp To Be Published.
Page generated: Fri Jul 26 00:06:47 2024
|