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Chlorine in PDB 4pyt: Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase

Enzymatic activity of Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase

All present enzymatic activity of Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase:
1.3.1.98;

Protein crystallography data

The structure of Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase, PDB code: 4pyt was solved by H.Cao, L.Franz, S.Sen, C.Bingman, M.Auldridge, E.Steinmetz, D.Mead, G.N.Phillips Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.17 / 1.85
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 106.786, 106.786, 201.085, 90.00, 90.00, 120.00
R / Rfree (%) 20.4 / 22.7

Other elements in 4pyt:

The structure of Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase (pdb code 4pyt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase, PDB code: 4pyt:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4pyt

Go back to Chlorine Binding Sites List in 4pyt
Chlorine binding site 1 out of 2 in the Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:46.8
occ:1.00
N A:ALA85 3.3 34.1 1.0
O A:HOH814 3.4 51.1 1.0
O A:HOH840 3.5 51.6 1.0
CA A:GLY84 3.8 30.2 1.0
CE A:LYS82 3.8 38.0 1.0
CB A:ALA85 3.9 38.4 1.0
CG2 A:ILE39 4.0 32.9 1.0
C A:GLY84 4.1 33.6 1.0
CA A:ALA85 4.2 33.8 1.0
NZ A:LYS82 4.6 42.5 1.0
N A:GLY84 4.6 30.1 1.0
CD A:LYS82 4.8 33.4 1.0
CD1 A:ILE39 4.9 38.9 1.0

Chlorine binding site 2 out of 2 in 4pyt

Go back to Chlorine Binding Sites List in 4pyt
Chlorine binding site 2 out of 2 in the Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:52.0
occ:1.00
N A:GLU256 3.3 36.5 1.0
CA A:SER255 3.5 38.2 1.0
OD1 A:ASN220 3.8 52.4 1.0
CG A:GLU256 3.8 42.2 1.0
CG2 A:VAL263 3.8 38.9 1.0
CB A:SER255 3.9 33.5 1.0
C A:SER255 3.9 37.7 1.0
CG1 A:VAL263 4.0 37.0 1.0
CB A:GLU256 4.2 41.5 1.0
NZ A:LYS253 4.3 54.0 1.0
CA A:GLU256 4.3 40.5 1.0
CE A:LYS253 4.4 46.2 1.0
CB A:VAL263 4.5 35.4 1.0
CE A:MET257 4.6 46.5 1.0
SD A:MET257 4.7 43.7 1.0
N A:SER255 4.8 37.9 1.0
CG A:ASN220 4.8 52.4 1.0
O A:VAL254 4.9 35.0 1.0
OG A:SER255 5.0 32.4 1.0

Reference:

H.Cao, L.Franz, S.Sen, C.Bingman, M.Auldridge, E.Steinmetz, D.Mead, G.N.Phillips Jr.. Crystal Structure of A Murb Family Ep-Udp-N-Acetylglucosamine Reductase To Be Published.
Page generated: Sat Dec 12 11:04:19 2020

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