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Chlorine in PDB 4q3n: Crystal Structure of Mgs-M5, A Lactate Dehydrogenase Enzyme From A Medee Basin Deep-Sea Metagenome Library

Protein crystallography data

The structure of Crystal Structure of Mgs-M5, A Lactate Dehydrogenase Enzyme From A Medee Basin Deep-Sea Metagenome Library, PDB code: 4q3n was solved by P.J.Stogios, X.Xu, H.Cui, M.Alcaide, M.Ferrer, A.Savchenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.31 / 1.97
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.818, 92.818, 203.804, 90.00, 90.00, 90.00
R / Rfree (%) 14.5 / 18.4

Other elements in 4q3n:

The structure of Crystal Structure of Mgs-M5, A Lactate Dehydrogenase Enzyme From A Medee Basin Deep-Sea Metagenome Library also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Mgs-M5, A Lactate Dehydrogenase Enzyme From A Medee Basin Deep-Sea Metagenome Library (pdb code 4q3n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Mgs-M5, A Lactate Dehydrogenase Enzyme From A Medee Basin Deep-Sea Metagenome Library, PDB code: 4q3n:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4q3n

Go back to Chlorine Binding Sites List in 4q3n
Chlorine binding site 1 out of 2 in the Crystal Structure of Mgs-M5, A Lactate Dehydrogenase Enzyme From A Medee Basin Deep-Sea Metagenome Library


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Mgs-M5, A Lactate Dehydrogenase Enzyme From A Medee Basin Deep-Sea Metagenome Library within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:85.0
occ:1.00
O A:HOH738 3.5 57.0 1.0
O A:HOH507 3.7 25.4 1.0
N A:GLY12 3.8 26.6 1.0
O A:THR78 4.0 33.0 1.0
O A:HOH789 4.0 72.8 1.0
CA A:GLY10 4.1 27.0 1.0
CA A:GLY12 4.1 26.7 1.0
C A:GLY10 4.3 27.9 1.0
OG1 A:THR78 4.3 35.7 1.0
CA A:ALA79 4.3 33.8 1.0
O A:HOH741 4.4 49.5 1.0
N A:THR11 4.4 27.6 1.0
O A:HOH546 4.5 30.8 1.0
C A:THR78 4.6 31.7 1.0
N A:ALA79 4.7 32.2 1.0
N A:GLY80 4.8 39.3 1.0
C A:THR11 4.8 26.9 1.0
O A:GLY10 4.8 27.9 1.0
OD2 A:ASP35 5.0 35.0 1.0
C A:ALA79 5.0 36.0 1.0
O A:GLY80 5.0 48.4 1.0

Chlorine binding site 2 out of 2 in 4q3n

Go back to Chlorine Binding Sites List in 4q3n
Chlorine binding site 2 out of 2 in the Crystal Structure of Mgs-M5, A Lactate Dehydrogenase Enzyme From A Medee Basin Deep-Sea Metagenome Library


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Mgs-M5, A Lactate Dehydrogenase Enzyme From A Medee Basin Deep-Sea Metagenome Library within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:82.3
occ:1.00
N A:SER4 2.8 36.4 1.0
OE1 A:GLU30 3.0 50.7 1.0
CA A:SER4 3.4 30.3 1.0
C A:SER4 3.4 27.8 1.0
O A:HOH668 3.5 44.5 1.0
CB A:SER4 3.7 31.6 1.0
O A:SER4 3.7 24.7 1.0
N A:LYS5 3.8 25.5 1.0
C A:ASN3 3.9 40.9 1.0
CD A:GLU30 4.1 49.5 1.0
CB A:LYS5 4.3 26.5 1.0
OD1 A:ASN3 4.3 42.2 1.0
CA A:ASN3 4.3 45.3 1.0
CG A:ASN3 4.5 46.2 1.0
CG A:GLU30 4.6 41.8 1.0
CA A:LYS5 4.6 24.4 1.0
ND2 A:ASN3 4.8 52.2 1.0
O A:ASN3 4.9 42.2 1.0

Reference:

M.Alcaide, P.J.Stogios, A.Lafraya, A.Tchigvintsev, R.Flick, R.Bargiela, T.N.Chernikova, O.N.Reva, T.Hai, C.C.Leggewie, N.Katzke, V.La Cono, R.Matesanz, M.Jebbar, K.E.Jaeger, M.M.Yakimov, A.F.Yakunin, P.N.Golyshin, O.V.Golyshina, A.Savchenko, M.Ferrer. Pressure Adaptation Is Linked to Thermal Adaptation in Salt-Saturated Marine Habitats. Environ Microbiol 2014.
PubMed: 25330254
DOI: 10.1111/1462-2920.12660
Page generated: Sat Dec 12 11:04:34 2020

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