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Chlorine in PDB 4qcf: Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

Enzymatic activity of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

All present enzymatic activity of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27:
3.2.1.8;

Protein crystallography data

The structure of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 4qcf was solved by P.Mahanta, A.Bhardwaj, V.S.Reddy, S.Ramakumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.78 / 2.26
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 73.570, 80.120, 69.900, 90.00, 110.81, 90.00
R / Rfree (%) 17.4 / 22.5

Other elements in 4qcf:

The structure of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 (pdb code 4qcf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 4qcf:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4qcf

Go back to Chlorine Binding Sites List in 4qcf
Chlorine binding site 1 out of 3 in the Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:43.1
occ:1.00
N A:ASP95 3.1 32.4 1.0
O A:HOH618 3.2 30.9 1.0
O A:HOH543 3.4 28.6 1.0
CG A:ASP95 3.6 34.1 1.0
OD1 A:ASP95 3.7 33.3 1.0
CA A:PRO94 3.7 31.3 1.0
CB A:ASP95 3.7 34.5 1.0
CD1 A:ILE54 3.9 26.5 1.0
C A:PRO94 3.9 31.7 1.0
CA A:ASP95 4.0 33.3 1.0
OD2 A:ASP95 4.1 35.3 1.0
CB A:PRO94 4.3 31.8 1.0
O A:VAL93 4.8 30.1 1.0
N A:PRO94 4.9 30.3 1.0

Chlorine binding site 2 out of 3 in 4qcf

Go back to Chlorine Binding Sites List in 4qcf
Chlorine binding site 2 out of 3 in the Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:26.3
occ:0.50
O A:HOH502 3.2 13.8 1.0
O A:HOH564 3.3 14.6 1.0
NE2 A:GLN285 3.4 19.1 1.0
CB A:PRO347 3.9 16.8 1.0
OE1 A:GLN285 4.3 19.0 1.0
CD A:GLN285 4.3 19.1 1.0
CA A:PRO347 4.4 16.4 1.0
CG A:PRO347 4.6 17.1 1.0
O A:HOH553 4.7 17.4 1.0
CD A:ARG351 4.8 18.9 1.0
O A:PRO347 4.9 16.1 1.0

Chlorine binding site 3 out of 3 in 4qcf

Go back to Chlorine Binding Sites List in 4qcf
Chlorine binding site 3 out of 3 in the Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:25.1
occ:0.50
ND2 A:ASN292 3.3 22.7 1.0
NE2 A:GLN293 3.3 27.5 1.0
CG A:GLN293 3.5 25.6 1.0
O A:ASP289 3.5 19.9 1.0
CD A:GLN293 3.9 26.9 1.0
NH2 A:ARG351 4.0 20.4 1.0
CB A:ASN292 4.1 21.1 1.0
CG A:ASN292 4.2 21.9 1.0
CA A:ASP289 4.2 20.2 1.0
C A:ASP289 4.2 19.7 1.0
CB A:ASP289 4.3 21.6 1.0
OD1 A:ASP289 4.3 23.4 1.0
N A:GLN293 4.6 22.2 1.0
CG A:ASP289 4.7 22.9 1.0
CB A:GLN293 4.8 24.3 1.0
O A:HOH580 4.9 24.1 1.0
CZ A:ARG351 5.0 19.8 1.0

Reference:

P.Mahanta, A.Bhardwaj, K.Kumar, V.S.Reddy, S.Ramakumar. Crystal Structure of N-Terminal Mutant (V1A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 To Be Published.
Page generated: Sat Dec 12 11:05:05 2020

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