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Chlorine in PDB 4qgb: Crystal Structure of Mutant Ribosomal Protein G219V TTHL1

Protein crystallography data

The structure of Crystal Structure of Mutant Ribosomal Protein G219V TTHL1, PDB code: 4qgb was solved by A.G.Gabdulkhakov, N.A.Nevskaya, S.V.Nikonov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.43 / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.535, 74.749, 87.063, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 25.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Mutant Ribosomal Protein G219V TTHL1 (pdb code 4qgb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Mutant Ribosomal Protein G219V TTHL1, PDB code: 4qgb:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4qgb

Go back to Chlorine Binding Sites List in 4qgb
Chlorine binding site 1 out of 3 in the Crystal Structure of Mutant Ribosomal Protein G219V TTHL1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Mutant Ribosomal Protein G219V TTHL1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:38.8
occ:1.00
NZ A:LYS36 3.0 63.8 1.0
CG2 A:THR34 3.3 44.5 1.0
NZ B:LYS36 3.4 53.2 1.0
CG2 B:THR34 3.4 61.8 1.0
CB A:THR34 3.8 44.0 1.0
CA A:THR34 4.3 42.0 1.0
CE B:LYS36 4.4 50.6 1.0
CE A:LYS36 4.4 53.6 1.0
CA B:THR34 4.6 50.4 1.0
CB B:THR34 4.6 46.4 1.0
O B:ALA33 4.9 54.9 1.0
CD B:LYS36 4.9 41.5 1.0

Chlorine binding site 2 out of 3 in 4qgb

Go back to Chlorine Binding Sites List in 4qgb
Chlorine binding site 2 out of 3 in the Crystal Structure of Mutant Ribosomal Protein G219V TTHL1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Mutant Ribosomal Protein G219V TTHL1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:22.6
occ:1.00
O B:HOH417 3.2 30.0 1.0
CG2 B:THR207 3.3 38.5 1.0
N B:PHE208 3.7 32.8 1.0
CA B:THR207 4.0 43.1 1.0
NZ B:LYS200 4.1 15.5 1.0
CB B:THR207 4.1 42.5 1.0
C B:THR207 4.3 41.1 1.0
N B:LEU209 4.5 33.3 1.0
OG1 B:THR207 4.5 46.8 1.0
CB B:PHE208 4.6 17.6 1.0
CA B:PHE208 4.6 24.5 1.0

Chlorine binding site 3 out of 3 in 4qgb

Go back to Chlorine Binding Sites List in 4qgb
Chlorine binding site 3 out of 3 in the Crystal Structure of Mutant Ribosomal Protein G219V TTHL1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Mutant Ribosomal Protein G219V TTHL1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:62.6
occ:1.00
N B:LYS70 3.0 58.8 1.0
N B:GLN71 3.2 51.5 1.0
CB B:GLN71 3.6 59.4 1.0
CB B:LYS70 3.7 57.3 1.0
CA B:LYS70 3.7 55.0 1.0
C B:GLY69 4.0 76.4 1.0
C B:LYS70 4.0 54.2 1.0
CA B:GLY69 4.0 65.9 1.0
CG B:LYS70 4.0 61.0 1.0
CA B:GLN71 4.1 53.8 1.0
CE1 B:PHE180 4.2 49.2 1.0
CZ B:PHE180 4.6 47.0 1.0
OE1 B:GLN71 4.8 68.7 1.0
CG B:GLN71 4.9 52.5 1.0

Reference:

S.V.Tishchenko, O.S.Kostareva, A.G.Gabdulkhakov, A.Mikhaylina, E.Y.Nikonova, N.A.Nevskaya, A.V.Sarskikh, W.Piendl, M.B.Garber, S.V.Nikonov. Protein-Rna Affinity of Ribosomal Protein L1 Mutants Does Not Correlate with the Number of Intermolecular Interactions Acta Crystallogr.,Sect.D 2015.
ISSN: ESSN 1399-0047
DOI: 10.1107/S1399004714026248
Page generated: Sat Dec 12 11:05:16 2020

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