Chlorine in PDB 4qrn: High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid
Protein crystallography data
The structure of High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid, PDB code: 4qrn
was solved by
Y.Patskovsky,
A.Vladimirova,
R.Toro,
R.Bhosle,
J.A.Gerlt,
F.M.Raushel,
S.C.Almo,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
28.14 /
1.07
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
92.723,
60.747,
130.517,
90.00,
103.33,
90.00
|
R / Rfree (%)
|
13.5 /
15.5
|
Other elements in 4qrn:
The structure of High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid
(pdb code 4qrn). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the
High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid, PDB code: 4qrn:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Chlorine binding site 1 out
of 8 in 4qrn
Go back to
Chlorine Binding Sites List in 4qrn
Chlorine binding site 1 out
of 8 in the High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl405
b:19.5
occ:0.88
|
HG
|
A:SER234
|
2.1
|
15.2
|
1.0
|
H
|
A:SER234
|
2.3
|
12.1
|
1.0
|
O
|
A:HOH815
|
2.7
|
28.0
|
1.0
|
HG11
|
A:VAL179
|
2.7
|
15.8
|
1.0
|
HD2
|
A:PRO233
|
2.8
|
13.5
|
1.0
|
OG
|
A:SER234
|
2.9
|
12.7
|
1.0
|
HA
|
A:TYR232
|
2.9
|
11.7
|
1.0
|
O
|
A:HOH961
|
3.1
|
31.0
|
1.0
|
N
|
A:SER234
|
3.1
|
10.1
|
1.0
|
HB3
|
A:SER234
|
3.3
|
14.1
|
1.0
|
N
|
A:PRO233
|
3.4
|
10.1
|
1.0
|
C
|
A:TYR232
|
3.4
|
9.3
|
1.0
|
HG22
|
A:VAL179
|
3.5
|
14.8
|
1.0
|
CD
|
A:PRO233
|
3.5
|
11.3
|
1.0
|
CB
|
A:SER234
|
3.5
|
11.8
|
1.0
|
CA
|
A:TYR232
|
3.5
|
9.8
|
1.0
|
HB3
|
A:TYR232
|
3.5
|
12.2
|
1.0
|
HD1
|
A:TYR232
|
3.7
|
14.7
|
1.0
|
CG1
|
A:VAL179
|
3.7
|
13.2
|
1.0
|
HG21
|
A:VAL179
|
3.7
|
14.8
|
1.0
|
CA
|
A:SER234
|
3.9
|
10.0
|
1.0
|
H
|
A:LEU235
|
4.0
|
10.7
|
1.0
|
CG2
|
A:VAL179
|
4.0
|
12.3
|
1.0
|
HG13
|
A:VAL179
|
4.0
|
15.8
|
1.0
|
HD3
|
A:PRO233
|
4.0
|
13.5
|
1.0
|
CB
|
A:TYR232
|
4.1
|
10.2
|
1.0
|
O
|
A:TYR232
|
4.1
|
9.6
|
1.0
|
C
|
A:PRO233
|
4.1
|
10.4
|
1.0
|
O
|
A:HOH1033
|
4.2
|
34.0
|
1.0
|
HG12
|
A:VAL179
|
4.2
|
15.8
|
1.0
|
CA
|
A:PRO233
|
4.2
|
10.7
|
1.0
|
HB2
|
A:SER234
|
4.4
|
14.1
|
1.0
|
HB2
|
A:PRO233
|
4.4
|
15.6
|
1.0
|
N
|
A:LEU235
|
4.5
|
8.9
|
1.0
|
CD1
|
A:TYR232
|
4.5
|
12.3
|
1.0
|
CB
|
A:VAL179
|
4.5
|
11.6
|
1.0
|
CG
|
A:PRO233
|
4.6
|
14.2
|
1.0
|
C
|
A:SER234
|
4.6
|
9.7
|
1.0
|
HA
|
A:SER234
|
4.6
|
12.0
|
1.0
|
CB
|
A:PRO233
|
4.7
|
13.0
|
1.0
|
HG2
|
A:PRO233
|
4.8
|
17.1
|
1.0
|
CG
|
A:TYR232
|
4.8
|
10.4
|
1.0
|
N
|
A:TYR232
|
4.8
|
9.3
|
1.0
|
HB2
|
A:TYR232
|
4.8
|
12.2
|
1.0
|
HG23
|
A:VAL179
|
4.9
|
14.8
|
1.0
|
O
|
A:LYS231
|
4.9
|
11.5
|
1.0
|
O
|
A:HOH830
|
5.0
|
33.1
|
1.0
|
|
Chlorine binding site 2 out
of 8 in 4qrn
Go back to
Chlorine Binding Sites List in 4qrn
Chlorine binding site 2 out
of 8 in the High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl406
b:27.2
occ:0.93
|
H
|
A:SER195
|
2.4
|
11.3
|
1.0
|
O
|
A:HOH768
|
2.6
|
25.3
|
1.0
|
HB2
|
A:PRO193
|
2.8
|
11.4
|
1.0
|
O3
|
A:GOL403
|
2.8
|
18.8
|
0.6
|
HB3
|
A:SER195
|
2.9
|
15.1
|
1.0
|
O
|
B:HOH707
|
3.0
|
34.7
|
1.0
|
HG
|
A:SER195
|
3.1
|
16.3
|
1.0
|
HB2
|
A:ASP194
|
3.1
|
11.5
|
1.0
|
N
|
A:SER195
|
3.1
|
9.4
|
1.0
|
H
|
A:ASP194
|
3.2
|
9.9
|
1.0
|
N
|
A:ASP194
|
3.5
|
8.2
|
1.0
|
CB
|
A:SER195
|
3.6
|
12.5
|
1.0
|
C1
|
A:GOL403
|
3.6
|
9.9
|
0.5
|
O
|
A:HOH916
|
3.6
|
38.7
|
1.0
|
OG
|
A:SER195
|
3.6
|
13.6
|
1.0
|
CB
|
A:PRO193
|
3.7
|
9.5
|
1.0
|
HA3
|
A:GLY163
|
3.7
|
10.5
|
1.0
|
C1
|
A:GOL403
|
3.8
|
14.0
|
0.6
|
O
|
A:HOH655
|
3.8
|
18.0
|
1.0
|
CB
|
A:ASP194
|
3.9
|
9.6
|
1.0
|
C
|
A:ASP194
|
3.9
|
8.5
|
1.0
|
CA
|
A:SER195
|
3.9
|
10.4
|
1.0
|
O1
|
A:GOL403
|
3.9
|
8.4
|
0.5
|
CA
|
A:ASP194
|
3.9
|
8.3
|
1.0
|
O1
|
A:GOL403
|
4.0
|
12.2
|
0.6
|
HB3
|
A:PRO193
|
4.1
|
11.4
|
1.0
|
C3
|
A:GOL403
|
4.1
|
18.2
|
0.6
|
C
|
A:PRO193
|
4.1
|
7.6
|
1.0
|
HA
|
A:SER195
|
4.2
|
12.5
|
1.0
|
HB3
|
A:ASP194
|
4.3
|
11.5
|
1.0
|
C3
|
A:GOL403
|
4.4
|
13.6
|
0.5
|
HG2
|
A:PRO193
|
4.4
|
11.3
|
1.0
|
CA
|
A:PRO193
|
4.4
|
7.8
|
1.0
|
HB2
|
A:SER195
|
4.4
|
15.1
|
1.0
|
C2
|
A:GOL403
|
4.5
|
12.7
|
0.5
|
HA2
|
A:GLY163
|
4.5
|
10.5
|
1.0
|
O
|
B:HOH894
|
4.5
|
38.7
|
1.0
|
O
|
A:HOH857
|
4.5
|
32.7
|
1.0
|
C2
|
A:GOL403
|
4.5
|
16.8
|
0.6
|
CA
|
A:GLY163
|
4.5
|
8.8
|
1.0
|
CG
|
A:PRO193
|
4.6
|
9.4
|
1.0
|
HA
|
A:PRO193
|
4.7
|
9.4
|
1.0
|
O2
|
A:GOL403
|
4.8
|
14.0
|
0.5
|
HA
|
A:ASP194
|
4.9
|
9.9
|
1.0
|
HG3
|
A:PRO193
|
4.9
|
11.3
|
1.0
|
O
|
A:PRO193
|
4.9
|
7.6
|
1.0
|
O
|
A:ASP194
|
5.0
|
9.3
|
1.0
|
|
Chlorine binding site 3 out
of 8 in 4qrn
Go back to
Chlorine Binding Sites List in 4qrn
Chlorine binding site 3 out
of 8 in the High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl407
b:22.4
occ:1.00
|
H
|
A:ASP123
|
2.5
|
14.7
|
1.0
|
HA
|
A:TYR121
|
2.8
|
14.5
|
1.0
|
HD2
|
A:PRO122
|
2.9
|
16.9
|
1.0
|
O
|
A:HOH843
|
2.9
|
38.6
|
1.0
|
HB3
|
A:ASP123
|
2.9
|
14.9
|
0.3
|
HB2
|
A:ASP123
|
2.9
|
21.4
|
0.7
|
HG2
|
A:ARG124
|
2.9
|
11.3
|
1.0
|
O
|
A:HOH931
|
3.2
|
35.0
|
1.0
|
N
|
A:ASP123
|
3.3
|
12.2
|
1.0
|
C
|
A:TYR121
|
3.4
|
11.4
|
1.0
|
HB2
|
A:ASP123
|
3.5
|
14.9
|
0.3
|
CA
|
A:TYR121
|
3.5
|
12.1
|
1.0
|
N
|
A:PRO122
|
3.5
|
12.5
|
1.0
|
CB
|
A:ASP123
|
3.5
|
12.4
|
0.3
|
CD
|
A:PRO122
|
3.6
|
14.1
|
1.0
|
HB3
|
A:TYR121
|
3.6
|
15.2
|
1.0
|
CB
|
A:ASP123
|
3.7
|
17.9
|
0.7
|
H
|
A:ARG124
|
3.7
|
11.7
|
1.0
|
HG2
|
A:PRO122
|
3.8
|
19.0
|
1.0
|
CG
|
A:ARG124
|
3.9
|
9.4
|
1.0
|
CA
|
A:ASP123
|
3.9
|
11.7
|
0.3
|
CA
|
A:ASP123
|
4.0
|
13.4
|
0.7
|
O
|
A:TYR121
|
4.0
|
10.8
|
1.0
|
HD1
|
A:TYR121
|
4.0
|
19.2
|
1.0
|
CB
|
A:TYR121
|
4.1
|
12.6
|
1.0
|
N
|
A:ARG124
|
4.1
|
9.7
|
1.0
|
HG3
|
A:ARG124
|
4.2
|
11.3
|
1.0
|
CG
|
A:PRO122
|
4.2
|
15.8
|
1.0
|
C
|
A:PRO122
|
4.3
|
13.5
|
1.0
|
OD2
|
A:ASP123
|
4.3
|
25.0
|
0.7
|
CG
|
A:ASP123
|
4.3
|
22.5
|
0.7
|
HD3
|
A:PRO122
|
4.4
|
16.9
|
1.0
|
C
|
A:ASP123
|
4.4
|
11.2
|
1.0
|
CA
|
A:PRO122
|
4.4
|
13.6
|
1.0
|
HB3
|
A:ASP123
|
4.5
|
21.4
|
0.7
|
HD3
|
A:ARG124
|
4.5
|
11.8
|
1.0
|
HB2
|
A:ARG124
|
4.5
|
10.8
|
1.0
|
O
|
A:HOH649
|
4.6
|
22.3
|
1.0
|
O
|
A:LYS120
|
4.6
|
15.4
|
1.0
|
CD
|
A:ARG124
|
4.7
|
9.8
|
1.0
|
HD2
|
A:ARG124
|
4.7
|
11.8
|
1.0
|
N
|
A:TYR121
|
4.7
|
12.5
|
1.0
|
CB
|
A:ARG124
|
4.7
|
9.0
|
1.0
|
CD1
|
A:TYR121
|
4.7
|
16.0
|
1.0
|
HA
|
A:ASP123
|
4.8
|
14.0
|
0.3
|
HA
|
A:ASP123
|
4.9
|
16.1
|
0.7
|
CG
|
A:ASP123
|
4.9
|
14.4
|
0.3
|
HB2
|
A:TYR121
|
4.9
|
15.2
|
1.0
|
CG
|
A:TYR121
|
4.9
|
13.6
|
1.0
|
O
|
A:HOH771
|
5.0
|
32.0
|
1.0
|
HG3
|
A:PRO122
|
5.0
|
19.0
|
1.0
|
|
Chlorine binding site 4 out
of 8 in 4qrn
Go back to
Chlorine Binding Sites List in 4qrn
Chlorine binding site 4 out
of 8 in the High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl404
b:21.6
occ:0.68
|
H
|
B:ARG58
|
2.4
|
16.2
|
1.0
|
HB2
|
B:SER56
|
2.9
|
19.4
|
1.0
|
O
|
B:HOH880
|
2.9
|
32.3
|
1.0
|
HB3
|
A:SER263
|
3.0
|
21.0
|
1.0
|
O
|
A:HOH664
|
3.0
|
16.4
|
1.0
|
HB2
|
B:ARG58
|
3.1
|
13.9
|
1.0
|
HA
|
A:SER263
|
3.1
|
20.2
|
1.0
|
N
|
B:ARG58
|
3.2
|
13.5
|
1.0
|
HB3
|
B:GLU57
|
3.2
|
49.7
|
1.0
|
O
|
B:HOH674
|
3.3
|
28.5
|
1.0
|
HB3
|
B:ARG58
|
3.3
|
13.9
|
1.0
|
H
|
B:GLU57
|
3.4
|
23.5
|
1.0
|
CB
|
B:ARG58
|
3.5
|
11.6
|
1.0
|
CB
|
A:SER263
|
3.6
|
17.5
|
1.0
|
CA
|
A:SER263
|
3.7
|
16.9
|
1.0
|
O
|
A:ARG262
|
3.7
|
19.6
|
1.0
|
N
|
B:GLU57
|
3.8
|
19.6
|
1.0
|
HB2
|
A:SER263
|
3.8
|
21.0
|
1.0
|
CB
|
B:SER56
|
3.8
|
16.2
|
1.0
|
CA
|
B:ARG58
|
4.0
|
12.0
|
1.0
|
C
|
A:ARG262
|
4.0
|
16.7
|
1.0
|
N
|
A:SER263
|
4.0
|
15.9
|
1.0
|
CB
|
B:GLU57
|
4.1
|
41.4
|
1.0
|
C
|
B:GLU57
|
4.2
|
17.4
|
1.0
|
HB3
|
A:ARG262
|
4.2
|
19.2
|
1.0
|
CA
|
B:GLU57
|
4.2
|
25.4
|
1.0
|
OG
|
B:SER56
|
4.2
|
15.8
|
1.0
|
O
|
A:HOH990
|
4.3
|
28.0
|
1.0
|
HB3
|
B:SER56
|
4.4
|
19.4
|
1.0
|
C
|
B:SER56
|
4.4
|
16.8
|
1.0
|
HA
|
B:ARG58
|
4.5
|
14.4
|
1.0
|
HB2
|
B:GLU57
|
4.5
|
49.7
|
1.0
|
HA
|
B:SER56
|
4.5
|
19.6
|
1.0
|
CA
|
B:SER56
|
4.6
|
16.4
|
1.0
|
H
|
A:SER263
|
4.6
|
19.1
|
1.0
|
HB2
|
A:ARG262
|
4.6
|
19.2
|
1.0
|
H
|
B:ALA59
|
4.7
|
12.4
|
1.0
|
O
|
A:HOH726
|
4.7
|
25.0
|
1.0
|
CB
|
A:ARG262
|
4.8
|
16.0
|
1.0
|
OG
|
A:SER263
|
4.9
|
18.2
|
1.0
|
CG
|
B:ARG58
|
5.0
|
11.1
|
1.0
|
|
Chlorine binding site 5 out
of 8 in 4qrn
Go back to
Chlorine Binding Sites List in 4qrn
Chlorine binding site 5 out
of 8 in the High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl405
b:30.7
occ:1.00
|
H
|
C:ARG58
|
2.4
|
22.1
|
1.0
|
HB3
|
D:SER263
|
3.0
|
25.0
|
1.0
|
HB2
|
C:SER56
|
3.0
|
26.3
|
1.0
|
HA
|
D:SER263
|
3.0
|
24.3
|
1.0
|
O
|
D:HOH674
|
3.1
|
23.1
|
1.0
|
HB2
|
C:ARG58
|
3.1
|
18.6
|
1.0
|
N
|
C:ARG58
|
3.2
|
18.4
|
1.0
|
HB3
|
C:GLU57
|
3.3
|
61.9
|
1.0
|
HB3
|
C:ARG58
|
3.3
|
18.6
|
1.0
|
H
|
C:GLU57
|
3.4
|
32.0
|
1.0
|
O
|
C:HOH968
|
3.5
|
35.3
|
1.0
|
CB
|
C:ARG58
|
3.6
|
15.5
|
1.0
|
CB
|
D:SER263
|
3.6
|
20.9
|
1.0
|
CA
|
D:SER263
|
3.6
|
20.3
|
1.0
|
N
|
C:GLU57
|
3.8
|
26.6
|
1.0
|
HB2
|
D:SER263
|
3.8
|
25.0
|
1.0
|
CB
|
C:SER56
|
3.9
|
21.9
|
1.0
|
O
|
D:ARG262
|
3.9
|
21.7
|
1.0
|
N
|
D:SER263
|
4.0
|
19.2
|
1.0
|
CA
|
C:ARG58
|
4.0
|
15.6
|
1.0
|
CB
|
C:GLU57
|
4.1
|
51.6
|
1.0
|
C
|
D:ARG262
|
4.1
|
19.9
|
1.0
|
OG
|
C:SER56
|
4.2
|
21.3
|
1.0
|
HB3
|
D:ARG262
|
4.2
|
24.0
|
1.0
|
C
|
C:GLU57
|
4.2
|
24.5
|
1.0
|
CA
|
C:GLU57
|
4.2
|
34.1
|
1.0
|
H
|
D:SER263
|
4.4
|
23.0
|
1.0
|
C
|
C:SER56
|
4.4
|
22.9
|
1.0
|
HB2
|
C:GLU57
|
4.5
|
61.9
|
1.0
|
HB3
|
C:SER56
|
4.5
|
26.3
|
1.0
|
HA
|
C:ARG58
|
4.6
|
18.7
|
1.0
|
HA
|
C:SER56
|
4.6
|
26.6
|
1.0
|
CA
|
C:SER56
|
4.6
|
22.1
|
1.0
|
HB2
|
D:ARG262
|
4.6
|
24.0
|
1.0
|
H
|
C:ALA59
|
4.6
|
16.3
|
1.0
|
CB
|
D:ARG262
|
4.8
|
20.0
|
1.0
|
O
|
D:HOH778
|
4.8
|
31.4
|
1.0
|
OG
|
D:SER263
|
4.9
|
21.4
|
1.0
|
CG
|
C:ARG58
|
5.0
|
14.9
|
1.0
|
HG
|
C:SER56
|
5.0
|
25.6
|
1.0
|
|
Chlorine binding site 6 out
of 8 in 4qrn
Go back to
Chlorine Binding Sites List in 4qrn
Chlorine binding site 6 out
of 8 in the High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl406
b:30.2
occ:0.94
|
H
|
C:GLU169
|
2.4
|
13.6
|
1.0
|
HG3
|
C:GLU169
|
2.6
|
36.3
|
1.0
|
HH22
|
C:ARG268
|
2.6
|
22.0
|
1.0
|
HH12
|
C:ARG268
|
2.8
|
20.3
|
1.0
|
HA
|
C:GLU168
|
2.9
|
12.7
|
1.0
|
O
|
C:HOH753
|
2.9
|
27.6
|
1.0
|
N
|
C:GLU169
|
3.2
|
11.3
|
1.0
|
NH2
|
C:ARG268
|
3.4
|
18.3
|
1.0
|
NH1
|
C:ARG268
|
3.5
|
16.9
|
1.0
|
CG
|
C:GLU169
|
3.5
|
30.3
|
1.0
|
HB2
|
C:GLU169
|
3.7
|
24.6
|
1.0
|
CA
|
C:GLU168
|
3.7
|
10.6
|
1.0
|
CZ
|
C:ARG268
|
3.9
|
16.5
|
1.0
|
C
|
C:GLU168
|
4.0
|
10.6
|
1.0
|
CB
|
C:GLU169
|
4.0
|
20.5
|
1.0
|
O
|
C:HOH781
|
4.0
|
31.4
|
1.0
|
O
|
C:ASP167
|
4.0
|
11.1
|
1.0
|
HH21
|
C:ARG268
|
4.1
|
22.0
|
1.0
|
CD
|
C:GLU169
|
4.2
|
38.1
|
1.0
|
HG2
|
C:GLU169
|
4.2
|
36.3
|
1.0
|
HH11
|
C:ARG268
|
4.2
|
20.3
|
1.0
|
CA
|
C:GLU169
|
4.2
|
13.0
|
1.0
|
HB3
|
C:GLU168
|
4.2
|
13.7
|
1.0
|
HG2
|
C:GLU168
|
4.3
|
16.0
|
1.0
|
O
|
C:HOH664
|
4.3
|
20.6
|
1.0
|
O
|
C:HOH754
|
4.3
|
38.1
|
1.0
|
O
|
C:HOH712
|
4.4
|
26.4
|
1.0
|
CB
|
C:GLU168
|
4.5
|
11.4
|
1.0
|
OE2
|
C:GLU169
|
4.6
|
41.6
|
1.0
|
HA
|
C:GLU169
|
4.6
|
15.7
|
1.0
|
OE1
|
C:GLU169
|
4.7
|
41.0
|
1.0
|
N
|
C:GLU168
|
4.7
|
9.4
|
1.0
|
C
|
C:ASP167
|
4.8
|
9.3
|
1.0
|
CG
|
C:GLU168
|
4.9
|
13.3
|
1.0
|
HB3
|
C:GLU169
|
4.9
|
24.6
|
1.0
|
|
Chlorine binding site 7 out
of 8 in 4qrn
Go back to
Chlorine Binding Sites List in 4qrn
Chlorine binding site 7 out
of 8 in the High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl404
b:25.7
occ:1.00
|
H
|
D:ASP123
|
2.4
|
19.2
|
1.0
|
HA
|
D:TYR121
|
2.8
|
17.0
|
1.0
|
HB2
|
D:ASP123
|
2.9
|
40.2
|
1.0
|
HD2
|
D:PRO122
|
2.9
|
18.6
|
1.0
|
HG2
|
D:ARG124
|
3.0
|
13.4
|
1.0
|
N
|
D:ASP123
|
3.3
|
16.0
|
1.0
|
O
|
D:HOH929
|
3.4
|
47.5
|
1.0
|
C
|
D:TYR121
|
3.4
|
13.2
|
1.0
|
N
|
D:PRO122
|
3.5
|
14.6
|
1.0
|
CA
|
D:TYR121
|
3.5
|
14.2
|
1.0
|
CD
|
D:PRO122
|
3.6
|
15.5
|
1.0
|
HB3
|
D:TYR121
|
3.6
|
17.4
|
1.0
|
CB
|
D:ASP123
|
3.7
|
33.5
|
1.0
|
HG2
|
D:PRO122
|
3.7
|
19.9
|
1.0
|
H
|
D:ARG124
|
3.7
|
13.6
|
1.0
|
CA
|
D:ASP123
|
3.9
|
20.2
|
1.0
|
CG
|
D:ARG124
|
3.9
|
11.2
|
1.0
|
O
|
D:TYR121
|
3.9
|
12.5
|
1.0
|
HD1
|
D:TYR121
|
4.0
|
20.9
|
1.0
|
CB
|
D:TYR121
|
4.1
|
14.5
|
1.0
|
N
|
D:ARG124
|
4.1
|
11.3
|
1.0
|
CG
|
D:PRO122
|
4.2
|
16.6
|
1.0
|
HG3
|
D:ARG124
|
4.2
|
13.4
|
1.0
|
C
|
D:PRO122
|
4.3
|
16.2
|
1.0
|
C
|
D:ASP123
|
4.3
|
14.1
|
1.0
|
CG
|
D:ASP123
|
4.4
|
45.9
|
1.0
|
HD3
|
D:PRO122
|
4.4
|
18.6
|
1.0
|
OD2
|
D:ASP123
|
4.4
|
54.2
|
1.0
|
CA
|
D:PRO122
|
4.4
|
15.8
|
1.0
|
HB3
|
D:ASP123
|
4.4
|
40.2
|
1.0
|
HB2
|
D:ARG124
|
4.5
|
12.7
|
1.0
|
HD3
|
D:ARG124
|
4.5
|
13.3
|
1.0
|
O
|
D:LYS120
|
4.6
|
17.0
|
1.0
|
O
|
D:HOH625
|
4.6
|
23.2
|
1.0
|
CD
|
D:ARG124
|
4.7
|
11.1
|
1.0
|
CB
|
D:ARG124
|
4.7
|
10.6
|
1.0
|
N
|
D:TYR121
|
4.7
|
14.2
|
1.0
|
HD2
|
D:ARG124
|
4.7
|
13.3
|
1.0
|
CD1
|
D:TYR121
|
4.7
|
17.4
|
1.0
|
HA
|
D:ASP123
|
4.8
|
24.2
|
1.0
|
HB2
|
D:TYR121
|
4.8
|
17.4
|
1.0
|
CG
|
D:TYR121
|
4.9
|
15.8
|
1.0
|
HG3
|
D:PRO122
|
4.9
|
19.9
|
1.0
|
O
|
D:HOH928
|
4.9
|
40.8
|
1.0
|
CB
|
D:PRO122
|
5.0
|
17.0
|
1.0
|
|
Chlorine binding site 8 out
of 8 in 4qrn
Go back to
Chlorine Binding Sites List in 4qrn
Chlorine binding site 8 out
of 8 in the High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of High-Resolution Crystal Structure of 5-Carboxyvanillate Decarboxylase (Target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 Complexed with Manganese and 4-Hydroxy-3-Methoxy-5-Nitrobenzoic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl405
b:24.7
occ:1.00
|
HG
|
D:SER234
|
2.2
|
19.0
|
1.0
|
H
|
D:SER234
|
2.4
|
17.5
|
1.0
|
HD2
|
D:PRO233
|
2.8
|
19.1
|
1.0
|
HA
|
D:TYR232
|
2.9
|
17.9
|
1.0
|
HG12
|
D:VAL179
|
2.9
|
21.6
|
1.0
|
HG23
|
D:VAL179
|
2.9
|
19.8
|
1.0
|
OG
|
D:SER234
|
3.0
|
15.8
|
1.0
|
HG13
|
D:VAL179
|
3.2
|
21.6
|
1.0
|
N
|
D:SER234
|
3.2
|
14.6
|
1.0
|
HB3
|
D:SER234
|
3.4
|
17.7
|
1.0
|
HB3
|
D:TYR232
|
3.5
|
18.8
|
1.0
|
HD1
|
D:TYR232
|
3.5
|
20.6
|
1.0
|
CG1
|
D:VAL179
|
3.5
|
18.0
|
1.0
|
N
|
D:PRO233
|
3.5
|
15.0
|
1.0
|
C
|
D:TYR232
|
3.5
|
14.3
|
1.0
|
CA
|
D:TYR232
|
3.5
|
14.9
|
1.0
|
CD
|
D:PRO233
|
3.6
|
15.9
|
1.0
|
CB
|
D:SER234
|
3.6
|
14.7
|
1.0
|
CG2
|
D:VAL179
|
3.9
|
16.5
|
1.0
|
CA
|
D:SER234
|
3.9
|
14.1
|
1.0
|
CB
|
D:TYR232
|
4.0
|
15.7
|
1.0
|
H
|
D:LEU235
|
4.0
|
15.2
|
1.0
|
O
|
D:HOH930
|
4.0
|
42.7
|
1.0
|
HD3
|
D:PRO233
|
4.1
|
19.1
|
1.0
|
O
|
D:TYR232
|
4.2
|
14.3
|
1.0
|
HG21
|
D:VAL179
|
4.2
|
19.8
|
1.0
|
C
|
D:PRO233
|
4.2
|
14.6
|
1.0
|
HG11
|
D:VAL179
|
4.2
|
21.6
|
1.0
|
CB
|
D:VAL179
|
4.3
|
16.3
|
1.0
|
CD1
|
D:TYR232
|
4.3
|
17.2
|
1.0
|
CA
|
D:PRO233
|
4.4
|
15.4
|
1.0
|
N
|
D:LEU235
|
4.5
|
12.6
|
1.0
|
HG22
|
D:VAL179
|
4.5
|
19.8
|
1.0
|
HB2
|
D:SER234
|
4.5
|
17.7
|
1.0
|
HB2
|
D:PRO233
|
4.6
|
20.0
|
1.0
|
C
|
D:SER234
|
4.6
|
13.4
|
1.0
|
CG
|
D:PRO233
|
4.6
|
18.0
|
1.0
|
CG
|
D:TYR232
|
4.7
|
16.3
|
1.0
|
HG2
|
D:PRO233
|
4.8
|
21.6
|
1.0
|
HA
|
D:SER234
|
4.8
|
17.0
|
1.0
|
HB2
|
D:TYR232
|
4.8
|
18.8
|
1.0
|
CB
|
D:PRO233
|
4.8
|
16.7
|
1.0
|
HB
|
D:VAL179
|
4.8
|
19.5
|
1.0
|
O
|
D:HOH785
|
4.8
|
32.5
|
1.0
|
N
|
D:TYR232
|
4.8
|
15.3
|
1.0
|
O
|
D:LYS231
|
4.8
|
17.8
|
1.0
|
HB2
|
D:LEU235
|
4.9
|
14.2
|
1.0
|
|
Reference:
Y.Patskovsky,
A.Vladimirova,
R.Toro,
R.Bhosle,
F.M.Raushel,
S.C.Almo.
Crystal Structure of 5-Carboxyvanillate Decarboxylase From Novosphingobium Aromaticivorans To Be Published.
Page generated: Fri Jul 26 00:45:36 2024
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