Atomistry » Chlorine » PDB 4qyy-4r66 » 4r0v
Atomistry »
  Chlorine »
    PDB 4qyy-4r66 »
      4r0v »

Chlorine in PDB 4r0v: [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster

Enzymatic activity of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster

All present enzymatic activity of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster:
1.18.99.1;

Protein crystallography data

The structure of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster, PDB code: 4r0v was solved by S.D.Swanson, M.W.Ratzloff, D.W.Mulder, J.H.Artz, S.Ghose, A.Hoffman, S.White, O.A.Zadvornyy, J.B.Broderick, B.Bothner, P.W.King, J.W.Peters, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.29
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 77.645, 70.964, 94.686, 90.00, 91.91, 90.00
R / Rfree (%) 20.6 / 25.2

Other elements in 4r0v:

The structure of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster also contains other interesting chemical elements:

Arsenic (As) 2 atoms
Iron (Fe) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster (pdb code 4r0v). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster, PDB code: 4r0v:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4r0v

Go back to Chlorine Binding Sites List in 4r0v
Chlorine binding site 1 out of 4 in the [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl602

b:73.8
occ:1.00
 O A:HOH745 2.9 49.6 1.0
O A:HOH702 2.9 31.9 1.0
O A:HOH737 2.9 34.8 1.0
CB A:ILE174 3.6 31.2 1.0
CD A:ARG234 3.6 40.6 1.0
CG2 A:ILE174 3.7 32.4 1.0
CG1 A:ILE174 3.7 30.9 1.0
CG A:GLU231 3.8 38.2 1.0
NE A:ARG234 3.9 43.4 1.0
CA A:PRO171 4.0 37.7 1.0
CB A:PRO171 4.1 37.1 1.0
CB A:GLU231 4.1 38.0 1.0
OE1 A:GLU231 4.3 46.0 1.0
CA A:GLU231 4.3 38.0 1.0
CZ A:ARG234 4.4 46.8 1.0
CD A:GLU231 4.5 41.4 1.0
O A:HOH723 4.6 37.3 1.0
NH1 A:ARG234 4.6 50.2 1.0
O A:HOH752 4.6 41.9 1.0
N A:PRO171 4.8 36.8 1.0
O A:HOH733 4.8 38.0 1.0
CG A:PRO171 4.9 40.1 1.0
O A:PRO171 4.9 36.8 1.0
C A:PRO171 5.0 38.3 1.0

Chlorine binding site 2 out of 4 in 4r0v

Go back to Chlorine Binding Sites List in 4r0v
Chlorine binding site 2 out of 4 in the [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl603

b:40.1
occ:1.00
 NZ A:LYS228 3.1 32.2 1.0
N A:GLN195 3.2 33.0 1.0
O A:HOH721 3.6 47.6 1.0
CB A:GLN195 3.7 32.6 1.0
CE A:LYS228 3.7 35.5 1.0
CB A:SER193 3.7 32.4 1.0
N A:PRO194 3.7 32.3 1.0
CD A:PRO194 3.8 32.5 1.0
CG A:GLN195 3.8 33.5 1.0
OG A:SER193 3.8 31.0 1.0
CB A:PRO194 3.8 31.5 1.0
CA A:GLN195 4.0 32.3 1.0
C A:PRO194 4.1 33.4 1.0
CA A:PRO194 4.1 32.5 1.0
CG A:PRO194 4.2 31.8 1.0
CD A:LYS228 4.3 35.5 1.0
C A:SER193 4.4 31.8 1.0
SD A:MET223 4.4 38.4 1.0
OE2 A:GLU231 4.6 44.4 1.0
CA A:SER193 4.7 31.6 1.0
CE A:MET223 4.7 39.8 1.0
CD A:GLN195 4.7 31.6 1.0
CG2 A:THR130 4.8 35.2 1.0
SG A:CSO169 4.9 47.2 0.3

Chlorine binding site 3 out of 4 in 4r0v

Go back to Chlorine Binding Sites List in 4r0v
Chlorine binding site 3 out of 4 in the [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl602

b:38.3
occ:1.00
 NZ B:LYS228 3.1 32.0 1.0
N B:GLN195 3.2 32.7 1.0
O B:HOH723 3.6 50.1 1.0
CB B:GLN195 3.7 32.6 1.0
CB B:SER193 3.7 32.8 1.0
CE B:LYS228 3.7 36.3 1.0
N B:PRO194 3.8 32.4 1.0
CD B:PRO194 3.8 32.8 1.0
CG B:GLN195 3.8 33.3 1.0
CB B:PRO194 3.8 31.0 1.0
OG B:SER193 3.9 31.2 1.0
CA B:GLN195 4.0 32.3 1.0
C B:PRO194 4.1 33.6 1.0
CA B:PRO194 4.1 33.1 1.0
CG B:PRO194 4.2 31.3 1.0
CD B:LYS228 4.3 35.6 1.0
C B:SER193 4.4 32.0 1.0
SD B:MET223 4.4 37.6 1.0
CE B:MET223 4.6 40.0 1.0
OE2 B:GLU231 4.6 44.2 1.0
CD B:GLN195 4.7 31.6 1.0
CA B:SER193 4.7 31.7 1.0
CG2 B:THR130 4.8 35.5 1.0

Chlorine binding site 4 out of 4 in 4r0v

Go back to Chlorine Binding Sites List in 4r0v
Chlorine binding site 4 out of 4 in the [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl603

b:78.8
occ:1.00
 O B:HOH746 2.8 49.7 1.0
O B:HOH738 2.9 35.2 1.0
O B:HOH702 2.9 31.4 1.0
CB B:ILE174 3.6 31.6 1.0
CG2 B:ILE174 3.7 32.8 1.0
CD B:ARG234 3.7 41.2 1.0
CG1 B:ILE174 3.7 31.2 1.0
CG B:GLU231 3.8 38.5 1.0
NE B:ARG234 3.9 43.8 1.0
CA B:PRO171 4.0 37.6 1.0
CB B:PRO171 4.0 36.9 1.0
CB B:GLU231 4.1 38.2 1.0
OE1 B:GLU231 4.3 45.0 1.0
CA B:GLU231 4.3 37.8 1.0
CZ B:ARG234 4.4 46.9 1.0
CD B:GLU231 4.5 41.4 1.0
O B:HOH724 4.6 37.4 1.0
NH1 B:ARG234 4.6 50.4 1.0
O B:HOH751 4.6 42.4 1.0
N B:PRO171 4.8 36.2 1.0
CG B:PRO171 4.8 39.6 1.0
O B:HOH734 4.9 38.2 1.0
O B:PRO171 4.9 36.9 1.0
C B:PRO171 5.0 38.2 1.0

Reference:

K.D.Swanson, M.W.Ratzloff, D.W.Mulder, J.H.Artz, S.Ghose, A.Hoffman, S.White, O.A.Zadvornyy, J.B.Broderick, B.Bothner, P.W.King, J.W.Peters. [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated at the H Cluster 2FE Subcluster. J.Am.Chem.Soc. 2015.
ISSN: ESSN 1520-5126
PubMed: 25579778
DOI: 10.1021/JA510169S
Page generated: Sat Dec 12 11:10:32 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy