Atomistry » Chlorine » PDB 4qz0-4r68 » 4r0v
Atomistry »
  Chlorine »
    PDB 4qz0-4r68 »
      4r0v »

Chlorine in PDB 4r0v: [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster

Enzymatic activity of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster

All present enzymatic activity of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster:
1.18.99.1;

Protein crystallography data

The structure of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster, PDB code: 4r0v was solved by S.D.Swanson, M.W.Ratzloff, D.W.Mulder, J.H.Artz, S.Ghose, A.Hoffman, S.White, O.A.Zadvornyy, J.B.Broderick, B.Bothner, P.W.King, J.W.Peters, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.29
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 77.645, 70.964, 94.686, 90.00, 91.91, 90.00
R / Rfree (%) 20.6 / 25.2

Other elements in 4r0v:

The structure of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster also contains other interesting chemical elements:

Arsenic (As) 2 atoms
Iron (Fe) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster (pdb code 4r0v). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster, PDB code: 4r0v:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 4r0v

Go back to Chlorine Binding Sites List in 4r0v
Chlorine binding site 1 out of 4 in the [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl602

b:73.8
occ:1.00
 O A:HOH745 2.9 49.6 1.0
O A:HOH702 2.9 31.9 1.0
O A:HOH737 2.9 34.8 1.0
CB A:ILE174 3.6 31.2 1.0
CD A:ARG234 3.6 40.6 1.0
CG2 A:ILE174 3.7 32.4 1.0
CG1 A:ILE174 3.7 30.9 1.0
CG A:GLU231 3.8 38.2 1.0
NE A:ARG234 3.9 43.4 1.0
CA A:PRO171 4.0 37.7 1.0
CB A:PRO171 4.1 37.1 1.0
CB A:GLU231 4.1 38.0 1.0
OE1 A:GLU231 4.3 46.0 1.0
CA A:GLU231 4.3 38.0 1.0
CZ A:ARG234 4.4 46.8 1.0
CD A:GLU231 4.5 41.4 1.0
O A:HOH723 4.6 37.3 1.0
NH1 A:ARG234 4.6 50.2 1.0
O A:HOH752 4.6 41.9 1.0
N A:PRO171 4.8 36.8 1.0
O A:HOH733 4.8 38.0 1.0
CG A:PRO171 4.9 40.1 1.0
O A:PRO171 4.9 36.8 1.0
C A:PRO171 5.0 38.3 1.0

Chlorine binding site 2 out of 4 in 4r0v

Go back to Chlorine Binding Sites List in 4r0v
Chlorine binding site 2 out of 4 in the [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl603

b:40.1
occ:1.00
 NZ A:LYS228 3.1 32.2 1.0
N A:GLN195 3.2 33.0 1.0
O A:HOH721 3.6 47.6 1.0
CB A:GLN195 3.7 32.6 1.0
CE A:LYS228 3.7 35.5 1.0
CB A:SER193 3.7 32.4 1.0
N A:PRO194 3.7 32.3 1.0
CD A:PRO194 3.8 32.5 1.0
CG A:GLN195 3.8 33.5 1.0
OG A:SER193 3.8 31.0 1.0
CB A:PRO194 3.8 31.5 1.0
CA A:GLN195 4.0 32.3 1.0
C A:PRO194 4.1 33.4 1.0
CA A:PRO194 4.1 32.5 1.0
CG A:PRO194 4.2 31.8 1.0
CD A:LYS228 4.3 35.5 1.0
C A:SER193 4.4 31.8 1.0
SD A:MET223 4.4 38.4 1.0
OE2 A:GLU231 4.6 44.4 1.0
CA A:SER193 4.7 31.6 1.0
CE A:MET223 4.7 39.8 1.0
CD A:GLN195 4.7 31.6 1.0
CG2 A:THR130 4.8 35.2 1.0
SG A:CSO169 4.9 47.2 0.3

Chlorine binding site 3 out of 4 in 4r0v

Go back to Chlorine Binding Sites List in 4r0v
Chlorine binding site 3 out of 4 in the [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl602

b:38.3
occ:1.00
 NZ B:LYS228 3.1 32.0 1.0
N B:GLN195 3.2 32.7 1.0
O B:HOH723 3.6 50.1 1.0
CB B:GLN195 3.7 32.6 1.0
CB B:SER193 3.7 32.8 1.0
CE B:LYS228 3.7 36.3 1.0
N B:PRO194 3.8 32.4 1.0
CD B:PRO194 3.8 32.8 1.0
CG B:GLN195 3.8 33.3 1.0
CB B:PRO194 3.8 31.0 1.0
OG B:SER193 3.9 31.2 1.0
CA B:GLN195 4.0 32.3 1.0
C B:PRO194 4.1 33.6 1.0
CA B:PRO194 4.1 33.1 1.0
CG B:PRO194 4.2 31.3 1.0
CD B:LYS228 4.3 35.6 1.0
C B:SER193 4.4 32.0 1.0
SD B:MET223 4.4 37.6 1.0
CE B:MET223 4.6 40.0 1.0
OE2 B:GLU231 4.6 44.2 1.0
CD B:GLN195 4.7 31.6 1.0
CA B:SER193 4.7 31.7 1.0
CG2 B:THR130 4.8 35.5 1.0

Chlorine binding site 4 out of 4 in 4r0v

Go back to Chlorine Binding Sites List in 4r0v
Chlorine binding site 4 out of 4 in the [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated By the Modification and Degradation of the H Cluster 2FE Subcluster within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl603

b:78.8
occ:1.00
 O B:HOH746 2.8 49.7 1.0
O B:HOH738 2.9 35.2 1.0
O B:HOH702 2.9 31.4 1.0
CB B:ILE174 3.6 31.6 1.0
CG2 B:ILE174 3.7 32.8 1.0
CD B:ARG234 3.7 41.2 1.0
CG1 B:ILE174 3.7 31.2 1.0
CG B:GLU231 3.8 38.5 1.0
NE B:ARG234 3.9 43.8 1.0
CA B:PRO171 4.0 37.6 1.0
CB B:PRO171 4.0 36.9 1.0
CB B:GLU231 4.1 38.2 1.0
OE1 B:GLU231 4.3 45.0 1.0
CA B:GLU231 4.3 37.8 1.0
CZ B:ARG234 4.4 46.9 1.0
CD B:GLU231 4.5 41.4 1.0
O B:HOH724 4.6 37.4 1.0
NH1 B:ARG234 4.6 50.4 1.0
O B:HOH751 4.6 42.4 1.0
N B:PRO171 4.8 36.2 1.0
CG B:PRO171 4.8 39.6 1.0
O B:HOH734 4.9 38.2 1.0
O B:PRO171 4.9 36.9 1.0
C B:PRO171 5.0 38.2 1.0

Reference:

K.D.Swanson, M.W.Ratzloff, D.W.Mulder, J.H.Artz, S.Ghose, A.Hoffman, S.White, O.A.Zadvornyy, J.B.Broderick, B.Bothner, P.W.King, J.W.Peters. [Fefe]-Hydrogenase Oxygen Inactivation Is Initiated at the H Cluster 2FE Subcluster. J.Am.Chem.Soc. 2015.
ISSN: ESSN 1520-5126
PubMed: 25579778
DOI: 10.1021/JA510169S
Page generated: Fri Jul 26 01:01:38 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy