Chlorine in PDB 4r6h: Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation
Protein crystallography data
The structure of Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation, PDB code: 4r6h
was solved by
Y.Patskovsky,
R.Toro,
R.Bhosle,
N.Al Obaidi,
S.Chamala,
J.D.Attonito,
A.Scott Glenn,
S.Chowdhury,
J.Lafleur,
R.D.Siedel,
B.Hillerich,
J.Love,
K.L.Whalen,
J.A.Gerlt,
S.C.Almo,
Enzyme Function Initiative (Efi),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
57.35 /
1.50
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
55.736,
61.920,
114.708,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.8 /
20.5
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation
(pdb code 4r6h). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation, PDB code: 4r6h:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 4r6h
Go back to
Chlorine Binding Sites List in 4r6h
Chlorine binding site 1 out
of 5 in the Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl501
b:24.4
occ:1.00
|
OH
|
A:TYR81
|
2.9
|
28.8
|
1.0
|
NE2
|
A:HIS74
|
3.1
|
22.5
|
1.0
|
O
|
A:HOH734
|
3.2
|
25.9
|
1.0
|
NH1
|
A:ARG80
|
3.3
|
26.4
|
1.0
|
CD
|
A:ARG80
|
3.8
|
26.6
|
1.0
|
CZ
|
A:TYR81
|
3.8
|
26.7
|
1.0
|
CE1
|
A:TYR54
|
3.9
|
18.2
|
1.0
|
CE1
|
A:HIS74
|
3.9
|
26.5
|
1.0
|
CD1
|
A:TYR54
|
3.9
|
16.6
|
1.0
|
CA
|
A:GLU55
|
3.9
|
19.2
|
1.0
|
CE2
|
A:TYR81
|
4.0
|
23.3
|
1.0
|
CD2
|
A:HIS74
|
4.1
|
20.0
|
1.0
|
CG
|
A:GLU55
|
4.2
|
38.5
|
1.0
|
CB
|
A:MET58
|
4.2
|
20.8
|
1.0
|
CZ
|
A:ARG80
|
4.3
|
26.0
|
1.0
|
CB
|
A:GLU55
|
4.3
|
22.1
|
1.0
|
NE
|
A:ARG80
|
4.5
|
27.1
|
1.0
|
O
|
A:HOH1031
|
4.6
|
47.0
|
1.0
|
O
|
A:HOH939
|
4.6
|
41.4
|
1.0
|
N
|
A:GLU55
|
4.6
|
19.9
|
1.0
|
CG
|
A:MET58
|
4.7
|
20.7
|
1.0
|
O
|
A:GLU55
|
4.7
|
20.1
|
1.0
|
O
|
A:TYR54
|
4.8
|
19.0
|
1.0
|
C
|
A:GLU55
|
4.9
|
19.1
|
1.0
|
CG
|
A:ARG80
|
5.0
|
26.6
|
1.0
|
C
|
A:TYR54
|
5.0
|
20.3
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 4r6h
Go back to
Chlorine Binding Sites List in 4r6h
Chlorine binding site 2 out
of 5 in the Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl502
b:25.0
occ:1.00
|
O
|
A:HOH665
|
3.1
|
23.9
|
1.0
|
NZ
|
A:LYS232
|
3.2
|
30.9
|
1.0
|
N
|
A:LYS232
|
3.2
|
21.8
|
1.0
|
O
|
A:HOH1049
|
3.3
|
51.6
|
1.0
|
CA
|
A:LYS231
|
3.7
|
17.7
|
1.0
|
CG
|
A:LYS232
|
3.9
|
24.5
|
1.0
|
CB
|
A:LYS231
|
3.9
|
22.3
|
1.0
|
CB
|
A:ASP169
|
3.9
|
22.0
|
1.0
|
CB
|
A:LYS232
|
4.0
|
21.4
|
1.0
|
C
|
A:LYS231
|
4.0
|
20.2
|
1.0
|
CD2
|
A:TYR168
|
4.0
|
23.3
|
1.0
|
CG
|
A:LYS231
|
4.1
|
26.4
|
1.0
|
CA
|
A:LYS232
|
4.2
|
21.2
|
1.0
|
CE
|
A:LYS232
|
4.3
|
29.9
|
1.0
|
N
|
A:ASP169
|
4.3
|
19.2
|
1.0
|
CB
|
A:TYR168
|
4.4
|
19.8
|
1.0
|
CD
|
A:LYS232
|
4.5
|
28.9
|
1.0
|
CA
|
A:ASP169
|
4.6
|
19.2
|
1.0
|
CG
|
A:TYR168
|
4.6
|
20.3
|
1.0
|
OD2
|
A:ASP169
|
4.7
|
34.0
|
1.0
|
CD
|
A:LYS231
|
4.8
|
35.7
|
1.0
|
CG
|
A:ASP169
|
4.8
|
30.5
|
1.0
|
C
|
A:TYR168
|
4.9
|
19.5
|
1.0
|
O
|
A:ALA230
|
4.9
|
20.3
|
1.0
|
CE2
|
A:TYR168
|
4.9
|
28.3
|
1.0
|
N
|
A:LYS231
|
5.0
|
20.8
|
1.0
|
O
|
A:HOH927
|
5.0
|
39.1
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 4r6h
Go back to
Chlorine Binding Sites List in 4r6h
Chlorine binding site 3 out
of 5 in the Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl503
b:29.8
occ:1.00
|
N
|
A:GLY251
|
2.8
|
34.6
|
1.0
|
OH
|
A:TYR337
|
3.0
|
20.9
|
1.0
|
N
|
A:GLY250
|
3.3
|
45.5
|
1.0
|
CA
|
A:GLY251
|
3.5
|
31.1
|
1.0
|
N
|
A:LEU253
|
3.5
|
19.4
|
1.0
|
CB
|
A:LEU253
|
3.5
|
19.8
|
1.0
|
CG
|
A:GLN249
|
3.6
|
35.3
|
1.0
|
C
|
A:GLY251
|
3.7
|
20.2
|
1.0
|
CE2
|
A:TYR337
|
3.8
|
17.4
|
1.0
|
CZ
|
A:TYR337
|
3.8
|
18.1
|
1.0
|
N
|
A:THR252
|
3.8
|
23.7
|
1.0
|
C
|
A:GLY250
|
3.8
|
59.0
|
1.0
|
CA
|
A:GLY250
|
4.0
|
35.3
|
1.0
|
CA
|
A:LEU253
|
4.1
|
19.0
|
1.0
|
CA
|
A:GLN249
|
4.2
|
30.0
|
1.0
|
C
|
A:GLN249
|
4.2
|
37.6
|
1.0
|
CB
|
A:ALA125
|
4.2
|
17.2
|
1.0
|
O
|
A:GLY251
|
4.3
|
21.6
|
1.0
|
CB
|
A:GLN249
|
4.5
|
54.9
|
1.0
|
C
|
A:THR252
|
4.6
|
19.8
|
1.0
|
O
|
A:HOH694
|
4.6
|
32.0
|
1.0
|
O
|
A:HOH1000
|
4.7
|
40.8
|
1.0
|
CG2
|
A:ILE268
|
4.7
|
17.6
|
1.0
|
CD
|
A:GLN249
|
4.7
|
29.3
|
1.0
|
CA
|
A:THR252
|
4.7
|
22.4
|
1.0
|
N
|
A:GLY254
|
4.7
|
20.1
|
1.0
|
CG
|
A:LEU253
|
4.8
|
16.9
|
1.0
|
CD2
|
A:LEU253
|
4.9
|
21.3
|
1.0
|
O
|
A:GLY250
|
4.9
|
42.0
|
1.0
|
NE2
|
A:GLN249
|
5.0
|
28.6
|
1.0
|
C
|
A:LEU253
|
5.0
|
18.4
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 4r6h
Go back to
Chlorine Binding Sites List in 4r6h
Chlorine binding site 4 out
of 5 in the Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl504
b:31.2
occ:1.00
|
O
|
A:VAL331
|
2.8
|
30.5
|
1.0
|
O
|
A:HOH670
|
2.9
|
25.6
|
1.0
|
O
|
A:HOH720
|
3.0
|
29.5
|
1.0
|
N
|
A:SER326
|
3.1
|
19.0
|
1.0
|
N
|
A:ALA333
|
3.1
|
20.1
|
1.0
|
O
|
A:HOH795
|
3.3
|
35.8
|
1.0
|
CA
|
A:PRO325
|
3.7
|
17.0
|
1.0
|
CB
|
A:SER326
|
3.7
|
20.4
|
1.0
|
CA
|
A:LYS332
|
3.7
|
21.7
|
1.0
|
C
|
A:VAL331
|
3.7
|
27.6
|
1.0
|
CB
|
A:ALA333
|
3.8
|
21.7
|
1.0
|
CB
|
A:PRO325
|
3.8
|
18.9
|
1.0
|
C
|
A:PRO325
|
3.9
|
16.6
|
1.0
|
CA
|
A:SER326
|
3.9
|
16.1
|
1.0
|
C
|
A:LYS332
|
3.9
|
21.9
|
1.0
|
CA
|
A:ALA333
|
4.0
|
18.7
|
1.0
|
N
|
A:LYS332
|
4.2
|
22.6
|
1.0
|
O
|
A:SER326
|
4.2
|
19.6
|
1.0
|
O
|
A:HOH719
|
4.3
|
38.5
|
1.0
|
C
|
A:SER326
|
4.5
|
17.0
|
1.0
|
CG1
|
A:VAL331
|
4.6
|
28.3
|
1.0
|
O
|
A:ALA333
|
4.6
|
20.2
|
1.0
|
CB
|
A:VAL331
|
4.8
|
23.5
|
1.0
|
O
|
A:LEU328
|
4.8
|
22.9
|
1.0
|
CD
|
A:LYS332
|
4.8
|
47.1
|
1.0
|
OG
|
A:SER326
|
4.8
|
28.1
|
1.0
|
O
|
A:HOH802
|
4.9
|
21.9
|
1.0
|
C
|
A:ALA333
|
4.9
|
17.7
|
1.0
|
CA
|
A:VAL331
|
4.9
|
26.7
|
1.0
|
CB
|
A:LYS332
|
5.0
|
29.3
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 4r6h
Go back to
Chlorine Binding Sites List in 4r6h
Chlorine binding site 5 out
of 5 in the Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl505
b:38.1
occ:1.00
|
N
|
A:ASP364
|
3.2
|
23.6
|
1.0
|
O
|
A:HOH967
|
3.3
|
46.1
|
1.0
|
CG
|
A:ASP364
|
3.4
|
37.1
|
0.5
|
OD2
|
A:ASP364
|
3.5
|
43.2
|
0.5
|
O
|
A:GLY361
|
3.5
|
24.3
|
1.0
|
CA
|
A:GLY361
|
3.6
|
25.8
|
1.0
|
CB
|
A:ASP364
|
3.6
|
28.0
|
0.5
|
C
|
A:GLY361
|
3.6
|
24.9
|
1.0
|
CB
|
A:ASP364
|
3.6
|
28.9
|
0.5
|
CB
|
A:TRP363
|
3.7
|
22.2
|
1.0
|
O
|
A:HOH730
|
3.8
|
30.1
|
1.0
|
N
|
A:TRP363
|
3.8
|
22.8
|
1.0
|
OD1
|
A:ASP364
|
3.9
|
28.3
|
0.5
|
CA
|
A:ASP364
|
3.9
|
25.3
|
0.5
|
CA
|
A:ASP364
|
4.0
|
24.1
|
0.5
|
CA
|
A:TRP363
|
4.0
|
19.9
|
1.0
|
C
|
A:TRP363
|
4.0
|
20.2
|
1.0
|
N
|
A:GLY361
|
4.1
|
26.6
|
1.0
|
O
|
A:HOH1014
|
4.2
|
44.7
|
1.0
|
CD1
|
A:TRP363
|
4.3
|
28.2
|
1.0
|
N
|
A:MET362
|
4.3
|
22.8
|
1.0
|
CG
|
A:TRP363
|
4.4
|
25.7
|
1.0
|
O
|
A:HOH1023
|
4.5
|
39.5
|
1.0
|
C
|
A:MET362
|
4.7
|
22.1
|
1.0
|
CG
|
A:ASP364
|
5.0
|
34.3
|
0.5
|
|
Reference:
Y.Patskovsky,
R.Toro,
R.Bhosle,
N.Al Obaidi,
S.Chamala,
A.Scott Glenn,
J.D.Attonito,
S.Chowdhury,
J.Lafleur,
R.D.Siedel,
B.Hillerich,
J.Love,
K.L.Whalen,
J.A.Gerlt,
S.C.Almo,
Enzyme Function Initiative (Efi).
Crystal Structure of Transporter Msme From Bacillus Subtilis, Target Efi-510764 To Be Published.
Page generated: Fri Jul 26 01:09:26 2024
|