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Chlorine in PDB 4r6h: Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation

Protein crystallography data

The structure of Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation, PDB code: 4r6h was solved by Y.Patskovsky, R.Toro, R.Bhosle, N.Al Obaidi, S.Chamala, J.D.Attonito, A.Scott Glenn, S.Chowdhury, J.Lafleur, R.D.Siedel, B.Hillerich, J.Love, K.L.Whalen, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 57.35 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.736, 61.920, 114.708, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 20.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation (pdb code 4r6h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation, PDB code: 4r6h:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 4r6h

Go back to Chlorine Binding Sites List in 4r6h
Chlorine binding site 1 out of 5 in the Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:24.4
occ:1.00
OH A:TYR81 2.9 28.8 1.0
NE2 A:HIS74 3.1 22.5 1.0
O A:HOH734 3.2 25.9 1.0
NH1 A:ARG80 3.3 26.4 1.0
CD A:ARG80 3.8 26.6 1.0
CZ A:TYR81 3.8 26.7 1.0
CE1 A:TYR54 3.9 18.2 1.0
CE1 A:HIS74 3.9 26.5 1.0
CD1 A:TYR54 3.9 16.6 1.0
CA A:GLU55 3.9 19.2 1.0
CE2 A:TYR81 4.0 23.3 1.0
CD2 A:HIS74 4.1 20.0 1.0
CG A:GLU55 4.2 38.5 1.0
CB A:MET58 4.2 20.8 1.0
CZ A:ARG80 4.3 26.0 1.0
CB A:GLU55 4.3 22.1 1.0
NE A:ARG80 4.5 27.1 1.0
O A:HOH1031 4.6 47.0 1.0
O A:HOH939 4.6 41.4 1.0
N A:GLU55 4.6 19.9 1.0
CG A:MET58 4.7 20.7 1.0
O A:GLU55 4.7 20.1 1.0
O A:TYR54 4.8 19.0 1.0
C A:GLU55 4.9 19.1 1.0
CG A:ARG80 5.0 26.6 1.0
C A:TYR54 5.0 20.3 1.0

Chlorine binding site 2 out of 5 in 4r6h

Go back to Chlorine Binding Sites List in 4r6h
Chlorine binding site 2 out of 5 in the Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:25.0
occ:1.00
O A:HOH665 3.1 23.9 1.0
NZ A:LYS232 3.2 30.9 1.0
N A:LYS232 3.2 21.8 1.0
O A:HOH1049 3.3 51.6 1.0
CA A:LYS231 3.7 17.7 1.0
CG A:LYS232 3.9 24.5 1.0
CB A:LYS231 3.9 22.3 1.0
CB A:ASP169 3.9 22.0 1.0
CB A:LYS232 4.0 21.4 1.0
C A:LYS231 4.0 20.2 1.0
CD2 A:TYR168 4.0 23.3 1.0
CG A:LYS231 4.1 26.4 1.0
CA A:LYS232 4.2 21.2 1.0
CE A:LYS232 4.3 29.9 1.0
N A:ASP169 4.3 19.2 1.0
CB A:TYR168 4.4 19.8 1.0
CD A:LYS232 4.5 28.9 1.0
CA A:ASP169 4.6 19.2 1.0
CG A:TYR168 4.6 20.3 1.0
OD2 A:ASP169 4.7 34.0 1.0
CD A:LYS231 4.8 35.7 1.0
CG A:ASP169 4.8 30.5 1.0
C A:TYR168 4.9 19.5 1.0
O A:ALA230 4.9 20.3 1.0
CE2 A:TYR168 4.9 28.3 1.0
N A:LYS231 5.0 20.8 1.0
O A:HOH927 5.0 39.1 1.0

Chlorine binding site 3 out of 5 in 4r6h

Go back to Chlorine Binding Sites List in 4r6h
Chlorine binding site 3 out of 5 in the Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl503

b:29.8
occ:1.00
N A:GLY251 2.8 34.6 1.0
OH A:TYR337 3.0 20.9 1.0
N A:GLY250 3.3 45.5 1.0
CA A:GLY251 3.5 31.1 1.0
N A:LEU253 3.5 19.4 1.0
CB A:LEU253 3.5 19.8 1.0
CG A:GLN249 3.6 35.3 1.0
C A:GLY251 3.7 20.2 1.0
CE2 A:TYR337 3.8 17.4 1.0
CZ A:TYR337 3.8 18.1 1.0
N A:THR252 3.8 23.7 1.0
C A:GLY250 3.8 59.0 1.0
CA A:GLY250 4.0 35.3 1.0
CA A:LEU253 4.1 19.0 1.0
CA A:GLN249 4.2 30.0 1.0
C A:GLN249 4.2 37.6 1.0
CB A:ALA125 4.2 17.2 1.0
O A:GLY251 4.3 21.6 1.0
CB A:GLN249 4.5 54.9 1.0
C A:THR252 4.6 19.8 1.0
O A:HOH694 4.6 32.0 1.0
O A:HOH1000 4.7 40.8 1.0
CG2 A:ILE268 4.7 17.6 1.0
CD A:GLN249 4.7 29.3 1.0
CA A:THR252 4.7 22.4 1.0
N A:GLY254 4.7 20.1 1.0
CG A:LEU253 4.8 16.9 1.0
CD2 A:LEU253 4.9 21.3 1.0
O A:GLY250 4.9 42.0 1.0
NE2 A:GLN249 5.0 28.6 1.0
C A:LEU253 5.0 18.4 1.0

Chlorine binding site 4 out of 5 in 4r6h

Go back to Chlorine Binding Sites List in 4r6h
Chlorine binding site 4 out of 5 in the Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:31.2
occ:1.00
O A:VAL331 2.8 30.5 1.0
O A:HOH670 2.9 25.6 1.0
O A:HOH720 3.0 29.5 1.0
N A:SER326 3.1 19.0 1.0
N A:ALA333 3.1 20.1 1.0
O A:HOH795 3.3 35.8 1.0
CA A:PRO325 3.7 17.0 1.0
CB A:SER326 3.7 20.4 1.0
CA A:LYS332 3.7 21.7 1.0
C A:VAL331 3.7 27.6 1.0
CB A:ALA333 3.8 21.7 1.0
CB A:PRO325 3.8 18.9 1.0
C A:PRO325 3.9 16.6 1.0
CA A:SER326 3.9 16.1 1.0
C A:LYS332 3.9 21.9 1.0
CA A:ALA333 4.0 18.7 1.0
N A:LYS332 4.2 22.6 1.0
O A:SER326 4.2 19.6 1.0
O A:HOH719 4.3 38.5 1.0
C A:SER326 4.5 17.0 1.0
CG1 A:VAL331 4.6 28.3 1.0
O A:ALA333 4.6 20.2 1.0
CB A:VAL331 4.8 23.5 1.0
O A:LEU328 4.8 22.9 1.0
CD A:LYS332 4.8 47.1 1.0
OG A:SER326 4.8 28.1 1.0
O A:HOH802 4.9 21.9 1.0
C A:ALA333 4.9 17.7 1.0
CA A:VAL331 4.9 26.7 1.0
CB A:LYS332 5.0 29.3 1.0

Chlorine binding site 5 out of 5 in 4r6h

Go back to Chlorine Binding Sites List in 4r6h
Chlorine binding site 5 out of 5 in the Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Putative Binding Protein Msme From Bacillus Subtilis Subsp. Subtilis Str. 168, Target Efi-510764, An Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl505

b:38.1
occ:1.00
N A:ASP364 3.2 23.6 1.0
O A:HOH967 3.3 46.1 1.0
CG A:ASP364 3.4 37.1 0.5
OD2 A:ASP364 3.5 43.2 0.5
O A:GLY361 3.5 24.3 1.0
CA A:GLY361 3.6 25.8 1.0
CB A:ASP364 3.6 28.0 0.5
C A:GLY361 3.6 24.9 1.0
CB A:ASP364 3.6 28.9 0.5
CB A:TRP363 3.7 22.2 1.0
O A:HOH730 3.8 30.1 1.0
N A:TRP363 3.8 22.8 1.0
OD1 A:ASP364 3.9 28.3 0.5
CA A:ASP364 3.9 25.3 0.5
CA A:ASP364 4.0 24.1 0.5
CA A:TRP363 4.0 19.9 1.0
C A:TRP363 4.0 20.2 1.0
N A:GLY361 4.1 26.6 1.0
O A:HOH1014 4.2 44.7 1.0
CD1 A:TRP363 4.3 28.2 1.0
N A:MET362 4.3 22.8 1.0
CG A:TRP363 4.4 25.7 1.0
O A:HOH1023 4.5 39.5 1.0
C A:MET362 4.7 22.1 1.0
CG A:ASP364 5.0 34.3 0.5

Reference:

Y.Patskovsky, R.Toro, R.Bhosle, N.Al Obaidi, S.Chamala, A.Scott Glenn, J.D.Attonito, S.Chowdhury, J.Lafleur, R.D.Siedel, B.Hillerich, J.Love, K.L.Whalen, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of Transporter Msme From Bacillus Subtilis, Target Efi-510764 To Be Published.
Page generated: Fri Jul 26 01:09:26 2024

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