Atomistry » Chlorine » PDB 4r68-4rit » 4r8j
Atomistry »
  Chlorine »
    PDB 4r68-4rit »
      4r8j »

Chlorine in PDB 4r8j: D(Tcggcgccga) with Lambda-[Ru(Tap)2(Dppz)]2+ Soaked in D2O

Protein crystallography data

The structure of D(Tcggcgccga) with Lambda-[Ru(Tap)2(Dppz)]2+ Soaked in D2O, PDB code: 4r8j was solved by J.P.Hall, S.P.Gurung, G.W.Winter, C.J.Cardin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.66 / 1.21
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 42.370, 42.370, 39.420, 90.00, 90.00, 90.00
R / Rfree (%) 10.9 / 12.5

Other elements in 4r8j:

The structure of D(Tcggcgccga) with Lambda-[Ru(Tap)2(Dppz)]2+ Soaked in D2O also contains other interesting chemical elements:

Ruthenium (Ru) 1 atom
Barium (Ba) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the D(Tcggcgccga) with Lambda-[Ru(Tap)2(Dppz)]2+ Soaked in D2O (pdb code 4r8j). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the D(Tcggcgccga) with Lambda-[Ru(Tap)2(Dppz)]2+ Soaked in D2O, PDB code: 4r8j:

Chlorine binding site 1 out of 1 in 4r8j

Go back to Chlorine Binding Sites List in 4r8j
Chlorine binding site 1 out of 1 in the D(Tcggcgccga) with Lambda-[Ru(Tap)2(Dppz)]2+ Soaked in D2O


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of D(Tcggcgccga) with Lambda-[Ru(Tap)2(Dppz)]2+ Soaked in D2O within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl103

b:23.7
occ:0.75
O A:DOD212 2.8 19.1 1.0
C36 A:RKL102 3.2 15.7 1.0
C35 A:RKL102 3.3 17.7 1.0
C28 A:RKL102 3.3 15.6 1.0
N12 A:RKL102 3.4 17.2 1.0
H28 A:RKL102 3.4 15.3 1.0
N11 A:RKL102 3.5 18.8 1.0
C27 A:RKL102 3.5 15.3 1.0
N8 A:RKL102 3.5 15.0 1.0
C37 A:RKL102 3.7 17.7 1.0
C38 A:RKL102 3.7 17.0 1.0
H27 A:RKL102 3.8 15.3 1.0
C29 A:RKL102 3.8 16.2 1.0
C34 A:RKL102 3.9 18.9 1.0
N7 A:RKL102 4.0 14.9 1.0
C26 A:RKL102 4.1 14.8 1.0
C25 A:RKL102 4.3 14.0 1.0
H38 A:RKL102 4.3 17.9 1.0
H37 A:RKL102 4.4 17.9 1.0
C32 A:RKL102 4.4 17.9 1.0
C33 A:RKL102 4.4 19.0 1.0
H34 A:RKL102 4.5 19.4 1.0
N9 A:RKL102 4.5 16.5 1.0
RU A:RKL102 4.6 15.5 1.0
O A:DOD208 4.9 22.4 1.0
O A:DOD213 5.0 31.8 1.0
C19 A:RKL102 5.0 14.4 1.0

Reference:

J.P.Hall, F.E.Poynton, P.M.Keane, S.P.Gurung, J.A.Brazier, D.J.Cardin, G.Winter, T.Gunnlaugsson, I.V.Sazanovich, M.Towrie, C.J.Cardin, J.M.Kelly, S.J.Quinn. Monitoring One-Electron Photo-Oxidation of Guanine in Dna Crystals Using Ultrafast Infrared Spectroscopy. Nat Chem V. 7 961 2015.
ISSN: ESSN 1755-4349
PubMed: 26587711
DOI: 10.1038/NCHEM.2369
Page generated: Sat Dec 12 11:11:04 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy