Atomistry » Chlorine » PDB 4r69-4rj7 » 4r8z
Atomistry »
  Chlorine »
    PDB 4r69-4rj7 »
      4r8z »

Chlorine in PDB 4r8z: Crystal Structure of PA4781 Hd-Gyp Domain From Pseudomonas Aeruginosa at 2.2A Resolution Showing A Bi-Metallic Ni Ion Center

Enzymatic activity of Crystal Structure of PA4781 Hd-Gyp Domain From Pseudomonas Aeruginosa at 2.2A Resolution Showing A Bi-Metallic Ni Ion Center

All present enzymatic activity of Crystal Structure of PA4781 Hd-Gyp Domain From Pseudomonas Aeruginosa at 2.2A Resolution Showing A Bi-Metallic Ni Ion Center:
3.1.4.1;

Protein crystallography data

The structure of Crystal Structure of PA4781 Hd-Gyp Domain From Pseudomonas Aeruginosa at 2.2A Resolution Showing A Bi-Metallic Ni Ion Center, PDB code: 4r8z was solved by G.Giardina, F.Cutruzzolaa, S.Rinaldo, V.Stelitano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.99 / 2.20
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 93.984, 93.984, 78.469, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 21.3

Other elements in 4r8z:

The structure of Crystal Structure of PA4781 Hd-Gyp Domain From Pseudomonas Aeruginosa at 2.2A Resolution Showing A Bi-Metallic Ni Ion Center also contains other interesting chemical elements:

Nickel (Ni) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of PA4781 Hd-Gyp Domain From Pseudomonas Aeruginosa at 2.2A Resolution Showing A Bi-Metallic Ni Ion Center (pdb code 4r8z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of PA4781 Hd-Gyp Domain From Pseudomonas Aeruginosa at 2.2A Resolution Showing A Bi-Metallic Ni Ion Center, PDB code: 4r8z:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4r8z

Go back to Chlorine Binding Sites List in 4r8z
Chlorine binding site 1 out of 2 in the Crystal Structure of PA4781 Hd-Gyp Domain From Pseudomonas Aeruginosa at 2.2A Resolution Showing A Bi-Metallic Ni Ion Center


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of PA4781 Hd-Gyp Domain From Pseudomonas Aeruginosa at 2.2A Resolution Showing A Bi-Metallic Ni Ion Center within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:40.2
occ:1.00
 CD A:ARG363 3.4 49.7 1.0
CG2 A:VAL360 3.9 23.6 1.0
CZ A:ARG186 4.1 72.6 1.0
CA A:VAL360 4.1 20.2 1.0
NE A:ARG186 4.2 67.0 1.0
CE1 A:TYR364 4.2 47.3 1.0
NH2 A:ARG186 4.3 89.6 1.0
NE A:ARG363 4.4 62.4 1.0
NH1 A:ARG186 4.4 71.6 1.0
CG A:GLU359 4.4 31.5 1.0
CB A:ARG363 4.5 34.1 1.0
CG A:ARG363 4.5 41.8 1.0
N A:VAL360 4.5 20.4 1.0
CD1 A:TYR364 4.6 38.9 1.0
O A:GLU359 4.6 21.1 1.0
CB A:VAL360 4.6 22.2 1.0
CD A:ARG186 4.6 58.7 1.0
C A:GLU359 4.7 21.7 1.0

Chlorine binding site 2 out of 2 in 4r8z

Go back to Chlorine Binding Sites List in 4r8z
Chlorine binding site 2 out of 2 in the Crystal Structure of PA4781 Hd-Gyp Domain From Pseudomonas Aeruginosa at 2.2A Resolution Showing A Bi-Metallic Ni Ion Center


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of PA4781 Hd-Gyp Domain From Pseudomonas Aeruginosa at 2.2A Resolution Showing A Bi-Metallic Ni Ion Center within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:41.8
occ:1.00
 NE B:ARG363 3.4 53.9 1.0
CD B:ARG363 3.6 43.5 1.0
CG2 B:VAL360 4.1 23.7 1.0
CA B:VAL360 4.1 20.1 1.0
CE2 B:TYR364 4.1 28.2 1.0
CB B:ARG363 4.2 31.4 1.0
CG B:GLU359 4.3 39.7 1.0
O B:GLU359 4.4 23.7 1.0
N B:VAL360 4.4 22.5 1.0
CG B:ARG363 4.4 40.6 1.0
CD2 B:TYR364 4.5 25.9 1.0
C B:GLU359 4.5 25.5 1.0
CZ B:ARG363 4.6 63.5 1.0
CB B:VAL360 4.7 21.5 1.0
CD B:ARG186 4.8 35.5 1.0
NH2 B:ARG363 5.0 59.0 1.0
OE2 B:GLU359 5.0 46.0 1.0

Reference:

S.Rinaldo, A.Paiardini, V.Stelitano, P.Brunotti, L.Cervoni, S.Fernicola, C.Protano, M.Vitali, F.Cutruzzola, G.Giardina. The Structural Basis of Functional Diversification of Hd-Gyp Domain Revealed By the Pseudomonas Aeruginosa PA4781 Protein Displaying An Unselective Bi-Metallic Binding Site. J.Bacteriol. 2015.
ISSN: ESSN 1098-5530
PubMed: 25691523
DOI: 10.1128/JB.02606-14
Page generated: Fri Jul 26 01:10:48 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy