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Chlorine in PDB 4rqa: Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group)

Enzymatic activity of Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group)

All present enzymatic activity of Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group):
2.4.2.8;

Protein crystallography data

The structure of Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group), PDB code: 4rqa was solved by A.Ghosh, S.C.Almo, New York Structural Genomics Research Consortium(Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.48
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 66.158, 71.919, 103.036, 90.00, 90.00, 90.00
R / Rfree (%) 15 / 19.4

Other elements in 4rqa:

The structure of Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group) also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group) (pdb code 4rqa). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group), PDB code: 4rqa:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 4rqa

Go back to Chlorine Binding Sites List in 4rqa
Chlorine binding site 1 out of 5 in the Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:40.1
occ:0.50
 CL A:CL205 0.0 40.1 0.5
CL A:CL205 1.9 54.6 0.5
N A:VAL158 3.2 25.0 1.0
NZ A:LYS136 3.3 36.8 1.0
CG2 A:VAL158 3.4 32.5 1.0
O A:VAL158 3.5 23.8 1.0
OE2 A:GLU108 3.7 69.4 1.0
CD1 A:PHE157 3.8 45.2 1.0
CA A:PHE157 3.9 30.2 1.0
O A:HOH329 4.0 32.2 1.0
CA A:VAL158 4.1 24.0 1.0
C A:PHE157 4.1 28.6 1.0
O A:GLU156 4.1 30.9 1.0
CE A:LYS136 4.2 25.5 1.0
CE1 A:PHE157 4.2 42.4 1.0
CD1 A:ILE106 4.2 29.3 1.0
C A:VAL158 4.2 21.7 1.0
CG A:PHE157 4.3 39.5 1.0
CB A:VAL158 4.4 25.8 1.0
CB A:PHE157 4.7 37.6 1.0
CD A:GLU108 4.8 41.9 1.0
CZ A:PHE157 4.9 40.5 1.0
N A:PHE157 4.9 33.6 1.0
C A:GLU156 4.9 27.7 1.0

Chlorine binding site 2 out of 5 in 4rqa

Go back to Chlorine Binding Sites List in 4rqa
Chlorine binding site 2 out of 5 in the Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:54.6
occ:0.50
 CL A:CL205 0.0 54.6 0.5
CL A:CL205 1.9 40.1 0.5
OE2 A:GLU108 2.8 69.4 1.0
CD A:GLU108 3.5 41.9 1.0
OE1 A:GLU108 3.6 65.4 1.0
O A:HOH329 3.9 32.2 1.0
CE1 A:PHE157 4.1 42.4 1.0
CD1 A:ILE106 4.2 29.3 1.0
NZ A:LYS136 4.2 36.8 1.0
CD1 A:PHE157 4.2 45.2 1.0
O A:VAL158 4.7 23.8 1.0
CG2 A:ILE106 4.7 24.1 1.0
CD2 A:LEU163 4.9 31.8 1.0
CG A:GLU108 4.9 33.3 1.0
CE A:LYS136 5.0 25.5 1.0

Chlorine binding site 3 out of 5 in 4rqa

Go back to Chlorine Binding Sites List in 4rqa
Chlorine binding site 3 out of 5 in the Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:43.3
occ:0.60
 CL A:CL206 0.0 43.3 0.6
CL A:CL206 1.7 43.1 0.4
OG A:SER66 2.9 22.6 1.0
NZ A:LYS98 3.2 56.7 1.0
O A:LEU41 3.5 20.0 1.0
CB A:SER66 3.6 21.3 1.0
N A:SER66 3.8 18.9 1.0
CG2 A:VAL42 4.0 24.8 1.0
C A:LEU41 4.2 20.7 1.0
CD A:LYS98 4.3 37.3 1.0
CA A:SER66 4.3 19.2 1.0
CE A:LYS98 4.3 45.7 1.0
C A:PRO40 4.4 24.0 1.0
N A:LEU41 4.5 19.7 1.0
C A:LEU65 4.5 20.5 1.0
O A:PRO40 4.6 23.5 1.0
CA A:PRO40 4.7 23.0 1.0
O A:HOH320 4.8 38.3 1.0
N A:VAL42 4.9 20.3 1.0
CA A:LEU65 4.9 19.4 1.0
CB A:PRO40 5.0 27.3 1.0

Chlorine binding site 4 out of 5 in 4rqa

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Chlorine binding site 4 out of 5 in the Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:43.1
occ:0.40
 CL A:CL206 0.0 43.1 0.4
CL A:CL206 1.7 43.3 0.6
CA A:PRO40 3.5 23.0 1.0
NZ A:LYS98 3.7 56.7 1.0
C A:PRO40 3.8 24.0 1.0
CB A:PRO40 3.9 27.3 1.0
N A:LEU41 3.9 19.7 1.0
O A:LEU41 3.9 20.0 1.0
O A:PRO40 4.3 23.5 1.0
C A:LEU41 4.6 20.7 1.0
OG A:SER66 4.6 22.6 1.0
CD A:LYS98 4.7 37.3 1.0
N A:SER66 4.7 18.9 1.0
CE A:LYS98 4.9 45.7 1.0
N A:PRO40 4.9 22.9 1.0
CA A:LEU41 4.9 20.1 1.0
O A:LYS39 5.0 22.5 1.0
CA A:LEU65 5.0 19.4 1.0

Chlorine binding site 5 out of 5 in 4rqa

Go back to Chlorine Binding Sites List in 4rqa
Chlorine binding site 5 out of 5 in the Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:25.6
occ:0.50
 NA A:NA203 2.4 22.9 0.5
CE A:MSE52 2.7 9.7 0.4
O A:MSE52 2.8 20.9 1.0
OG A:SER55 2.9 9.1 0.2
OD2 A:ASP56 3.1 22.2 1.0
OD1 A:ASP56 3.3 20.7 1.0
CG A:ASP56 3.3 22.9 1.0
C A:MSE52 3.5 19.3 1.0
CA A:MSE52 3.7 19.6 0.6
CA A:MSE52 3.7 20.2 0.4
CE1 A:TYR161 3.8 20.4 1.0
SE A:MSE52 3.9 31.0 0.4
CB A:MSE52 4.0 24.1 0.4
CB A:MSE52 4.0 20.7 0.6
OH A:TYR161 4.2 20.1 1.0
CZ A:TYR161 4.2 20.3 1.0
CB A:ASP56 4.3 18.7 1.0
CB A:SER55 4.3 13.6 0.2
N A:ASP56 4.4 18.8 1.0
CB A:SER55 4.5 21.0 0.8
CG A:MSE52 4.6 23.8 0.6
CD1 A:TYR161 4.7 21.1 1.0
N A:PHE53 4.7 17.4 1.0
CG A:MSE52 4.7 26.5 0.4
CA A:ASP56 4.9 18.0 1.0

Reference:

A.Ghosh, A.Ahmed, R.Bhoshle, R.Seidel, M.Stead, R.Toro, V.L.Schramm, S.C.Almo, New York Structural Genomics Research Consortium (Nysgrc). Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group) To Be Published.
Page generated: Sat Dec 12 11:11:57 2020

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