Chlorine in PDB 4s0w: Wild Type T4 Lysozyme Structure
Enzymatic activity of Wild Type T4 Lysozyme Structure
All present enzymatic activity of Wild Type T4 Lysozyme Structure:
3.2.1.17;
Protein crystallography data
The structure of Wild Type T4 Lysozyme Structure, PDB code: 4s0w
was solved by
E.H.Snell,
M.E.Snell,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
33.60 /
2.12
|
Space group
|
P 31
|
Cell size a, b, c (Å), α, β, γ (°)
|
52.630,
52.630,
99.460,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
17 /
21.7
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Wild Type T4 Lysozyme Structure
(pdb code 4s0w). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
Wild Type T4 Lysozyme Structure, PDB code: 4s0w:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 4s0w
Go back to
Chlorine Binding Sites List in 4s0w
Chlorine binding site 1 out
of 3 in the Wild Type T4 Lysozyme Structure
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Wild Type T4 Lysozyme Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl205
b:10.1
occ:1.00
|
HG
|
A:SER36
|
2.2
|
10.8
|
1.0
|
HG
|
B:SER117
|
2.2
|
13.4
|
1.0
|
H
|
B:SER117
|
2.7
|
12.1
|
1.0
|
OG
|
B:SER117
|
2.9
|
11.2
|
1.0
|
HA
|
A:SER36
|
3.0
|
11.2
|
1.0
|
OG
|
A:SER36
|
3.0
|
9.0
|
1.0
|
HB3
|
B:ASN132
|
3.1
|
19.5
|
1.0
|
HB3
|
B:PHE114
|
3.1
|
11.0
|
1.0
|
HD1
|
B:PHE114
|
3.2
|
12.7
|
1.0
|
HA
|
B:PHE114
|
3.2
|
11.0
|
1.0
|
HB2
|
B:SER117
|
3.2
|
11.6
|
1.0
|
O
|
B:HOH312
|
3.2
|
12.3
|
1.0
|
HB3
|
A:SER36
|
3.3
|
11.3
|
1.0
|
HB3
|
B:ASN116
|
3.4
|
13.7
|
1.0
|
HD2
|
A:PRO37
|
3.4
|
15.2
|
1.0
|
CB
|
A:SER36
|
3.5
|
9.4
|
1.0
|
N
|
B:SER117
|
3.5
|
10.1
|
1.0
|
CB
|
B:SER117
|
3.5
|
9.7
|
1.0
|
CA
|
A:SER36
|
3.7
|
9.3
|
1.0
|
H
|
B:ASN116
|
3.7
|
11.4
|
1.0
|
CA
|
B:PHE114
|
3.8
|
9.2
|
1.0
|
CB
|
B:PHE114
|
3.8
|
9.2
|
1.0
|
CD1
|
B:PHE114
|
3.9
|
10.6
|
1.0
|
C
|
B:PHE114
|
3.9
|
8.9
|
1.0
|
CB
|
B:ASN132
|
4.0
|
16.2
|
1.0
|
O
|
B:PHE114
|
4.0
|
8.4
|
1.0
|
HD23
|
B:LEU133
|
4.1
|
12.6
|
1.0
|
HD3
|
A:PRO37
|
4.1
|
15.2
|
1.0
|
CA
|
B:SER117
|
4.1
|
10.3
|
1.0
|
CD
|
A:PRO37
|
4.2
|
12.7
|
1.0
|
HB2
|
B:ASN132
|
4.2
|
19.5
|
1.0
|
CB
|
B:ASN116
|
4.2
|
11.4
|
1.0
|
CG
|
B:PHE114
|
4.3
|
10.2
|
1.0
|
N
|
B:ASN116
|
4.3
|
9.5
|
1.0
|
HB3
|
B:SER117
|
4.4
|
11.6
|
1.0
|
N
|
A:SER36
|
4.4
|
8.4
|
1.0
|
HB2
|
A:SER36
|
4.4
|
11.3
|
1.0
|
OD1
|
B:ASN132
|
4.5
|
22.6
|
1.0
|
C
|
B:ASN116
|
4.5
|
10.2
|
1.0
|
HB2
|
B:ASN116
|
4.5
|
13.7
|
1.0
|
O
|
B:ASN132
|
4.5
|
13.8
|
1.0
|
CA
|
B:ASN116
|
4.6
|
10.3
|
1.0
|
N
|
B:THR115
|
4.6
|
9.3
|
1.0
|
HA
|
B:SER117
|
4.6
|
12.3
|
1.0
|
HB2
|
B:PHE114
|
4.6
|
11.0
|
1.0
|
C
|
B:ASN132
|
4.6
|
13.3
|
1.0
|
HD21
|
B:LEU133
|
4.7
|
12.6
|
1.0
|
H
|
A:SER36
|
4.7
|
10.1
|
1.0
|
HA
|
B:LEU133
|
4.7
|
15.3
|
1.0
|
CG
|
B:ASN132
|
4.7
|
21.2
|
1.0
|
H
|
B:THR115
|
4.7
|
11.2
|
1.0
|
CD2
|
B:LEU133
|
4.8
|
10.5
|
1.0
|
HG
|
B:LEU133
|
4.8
|
13.8
|
1.0
|
C
|
A:SER36
|
4.9
|
10.1
|
1.0
|
N
|
A:PRO37
|
4.9
|
11.1
|
1.0
|
CE1
|
B:PHE114
|
4.9
|
11.3
|
1.0
|
HD22
|
B:ASN116
|
4.9
|
18.7
|
1.0
|
CA
|
B:ASN132
|
5.0
|
14.6
|
1.0
|
C
|
A:LYS35
|
5.0
|
9.3
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 4s0w
Go back to
Chlorine Binding Sites List in 4s0w
Chlorine binding site 2 out
of 3 in the Wild Type T4 Lysozyme Structure
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Wild Type T4 Lysozyme Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl206
b:9.6
occ:1.00
|
HG
|
A:SER117
|
2.1
|
9.6
|
1.0
|
HG
|
B:SER36
|
2.1
|
11.2
|
1.0
|
H
|
A:SER117
|
2.7
|
11.0
|
1.0
|
OG
|
A:SER117
|
2.8
|
8.0
|
1.0
|
OG
|
B:SER36
|
2.9
|
9.3
|
1.0
|
O
|
A:HOH307
|
3.1
|
8.5
|
1.0
|
HA
|
B:SER36
|
3.1
|
12.8
|
1.0
|
HB3
|
A:PHE114
|
3.1
|
10.1
|
1.0
|
HB2
|
A:SER117
|
3.2
|
9.8
|
1.0
|
O
|
A:HOH464
|
3.3
|
12.5
|
1.0
|
HA
|
A:PHE114
|
3.3
|
10.4
|
1.0
|
HD1
|
A:PHE114
|
3.3
|
10.0
|
1.0
|
HB3
|
A:ASN116
|
3.4
|
11.4
|
1.0
|
HB3
|
A:ASN132
|
3.4
|
10.4
|
1.0
|
CB
|
A:SER117
|
3.5
|
8.2
|
1.0
|
HB3
|
B:SER36
|
3.5
|
11.7
|
1.0
|
N
|
A:SER117
|
3.5
|
9.2
|
1.0
|
CB
|
B:SER36
|
3.6
|
9.8
|
1.0
|
HD2
|
B:PRO37
|
3.6
|
14.5
|
1.0
|
CA
|
B:SER36
|
3.8
|
10.7
|
1.0
|
H
|
A:ASN116
|
3.8
|
10.4
|
1.0
|
CB
|
A:PHE114
|
3.8
|
8.4
|
1.0
|
CA
|
A:PHE114
|
3.9
|
8.7
|
1.0
|
HD23
|
A:LEU133
|
4.0
|
9.2
|
1.0
|
C
|
A:PHE114
|
4.1
|
8.5
|
1.0
|
CA
|
A:SER117
|
4.1
|
9.2
|
1.0
|
CD1
|
A:PHE114
|
4.1
|
8.3
|
1.0
|
O
|
A:PHE114
|
4.2
|
8.4
|
1.0
|
CB
|
A:ASN116
|
4.2
|
9.5
|
1.0
|
N
|
A:ASN116
|
4.3
|
8.6
|
1.0
|
HD3
|
B:PRO37
|
4.3
|
14.5
|
1.0
|
HB3
|
A:SER117
|
4.3
|
9.8
|
1.0
|
CD
|
B:PRO37
|
4.4
|
12.1
|
1.0
|
CB
|
A:ASN132
|
4.4
|
8.7
|
1.0
|
CG
|
A:PHE114
|
4.4
|
9.1
|
1.0
|
C
|
A:ASN116
|
4.4
|
9.7
|
1.0
|
HB2
|
A:ASN116
|
4.4
|
11.4
|
1.0
|
N
|
B:SER36
|
4.5
|
10.6
|
1.0
|
HB2
|
B:SER36
|
4.5
|
11.7
|
1.0
|
HA
|
A:SER117
|
4.5
|
11.0
|
1.0
|
CA
|
A:ASN116
|
4.5
|
9.4
|
1.0
|
O
|
A:ASN132
|
4.6
|
9.1
|
1.0
|
HB2
|
A:ASN132
|
4.6
|
10.4
|
1.0
|
HA
|
A:LEU133
|
4.6
|
9.4
|
1.0
|
HB2
|
A:PHE114
|
4.6
|
10.1
|
1.0
|
N
|
A:THR115
|
4.7
|
9.4
|
1.0
|
H
|
B:SER36
|
4.7
|
12.7
|
1.0
|
C
|
A:ASN132
|
4.7
|
8.7
|
1.0
|
HD21
|
A:LEU133
|
4.8
|
9.2
|
1.0
|
H
|
A:THR115
|
4.8
|
11.3
|
1.0
|
CD2
|
A:LEU133
|
4.8
|
7.7
|
1.0
|
C
|
B:SER36
|
5.0
|
11.7
|
1.0
|
H
|
A:LEU118
|
5.0
|
11.3
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 4s0w
Go back to
Chlorine Binding Sites List in 4s0w
Chlorine binding site 3 out
of 3 in the Wild Type T4 Lysozyme Structure
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Wild Type T4 Lysozyme Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl203
b:12.3
occ:1.00
|
HZ1
|
A:LYS35
|
2.5
|
14.8
|
1.0
|
H
|
B:TRP138
|
2.6
|
19.0
|
1.0
|
HZ
|
B:PHE114
|
2.7
|
13.8
|
1.0
|
HB3
|
B:ARG137
|
3.0
|
28.1
|
1.0
|
O
|
A:HOH312
|
3.1
|
12.8
|
1.0
|
HB2
|
B:TRP138
|
3.2
|
16.0
|
1.0
|
HB2
|
B:SER136
|
3.2
|
15.3
|
1.0
|
N
|
B:TRP138
|
3.4
|
15.8
|
1.0
|
H
|
B:ARG137
|
3.4
|
21.0
|
1.0
|
NZ
|
A:LYS35
|
3.4
|
12.3
|
1.0
|
CZ
|
B:PHE114
|
3.4
|
11.5
|
1.0
|
HB3
|
B:TRP138
|
3.5
|
16.0
|
1.0
|
HE1
|
B:PHE114
|
3.5
|
13.5
|
1.0
|
HZ3
|
A:LYS35
|
3.7
|
14.8
|
1.0
|
CB
|
B:TRP138
|
3.7
|
13.3
|
1.0
|
HD2
|
A:LYS35
|
3.8
|
15.3
|
1.0
|
N
|
B:ARG137
|
3.9
|
17.5
|
1.0
|
HZ2
|
A:LYS35
|
3.9
|
14.8
|
1.0
|
CE1
|
B:PHE114
|
3.9
|
11.3
|
1.0
|
HH
|
A:TYR24
|
3.9
|
23.5
|
1.0
|
CB
|
B:ARG137
|
3.9
|
23.5
|
1.0
|
CA
|
B:TRP138
|
4.1
|
14.7
|
1.0
|
HE3
|
A:LYS35
|
4.1
|
15.1
|
1.0
|
CB
|
B:SER136
|
4.2
|
12.7
|
1.0
|
OH
|
A:TYR24
|
4.2
|
19.6
|
1.0
|
CE
|
A:LYS35
|
4.2
|
12.6
|
1.0
|
C
|
B:ARG137
|
4.2
|
17.1
|
1.0
|
CA
|
B:ARG137
|
4.2
|
18.7
|
1.0
|
HA
|
B:TRP138
|
4.3
|
17.6
|
1.0
|
HE1
|
B:MET106
|
4.4
|
14.7
|
1.0
|
HB2
|
B:ARG137
|
4.5
|
28.1
|
1.0
|
CD
|
A:LYS35
|
4.5
|
12.8
|
1.0
|
HD3
|
B:ARG137
|
4.5
|
46.4
|
1.0
|
CE2
|
B:PHE114
|
4.5
|
10.3
|
1.0
|
OG
|
B:SER136
|
4.7
|
12.4
|
1.0
|
HB3
|
B:SER136
|
4.7
|
15.3
|
1.0
|
C
|
B:SER136
|
4.7
|
16.6
|
1.0
|
HE2
|
B:PHE114
|
4.7
|
12.4
|
1.0
|
HG2
|
B:ARG137
|
4.7
|
34.1
|
1.0
|
HA
|
B:SER136
|
4.8
|
17.3
|
1.0
|
CA
|
B:SER136
|
4.8
|
14.4
|
1.0
|
CG
|
B:ARG137
|
4.9
|
28.4
|
1.0
|
HD3
|
A:LYS35
|
4.9
|
15.3
|
1.0
|
|
Reference:
E.H.Snell,
M.E.Snell.
Wild Type T4 Lysozyme Structure To Be Published.
Page generated: Fri Jul 26 01:39:30 2024
|