Atomistry » Chlorine » PDB 4s27-4tr9 » 4s37
Atomistry »
  Chlorine »
    PDB 4s27-4tr9 »
      4s37 »

Chlorine in PDB 4s37: Crystal Structure of R2 Pyocin Membrane-Piercing Spike

Protein crystallography data

The structure of Crystal Structure of R2 Pyocin Membrane-Piercing Spike, PDB code: 4s37 was solved by C.B.Browning, P.G.Leiman, M.M.Shneider, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.19 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 94.945, 137.471, 164.759, 90.00, 106.56, 90.00
R / Rfree (%) 16.3 / 20.8

Other elements in 4s37:

The structure of Crystal Structure of R2 Pyocin Membrane-Piercing Spike also contains other interesting chemical elements:

Calcium (Ca) 6 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 19;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of R2 Pyocin Membrane-Piercing Spike (pdb code 4s37). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 19 binding sites of Chlorine where determined in the Crystal Structure of R2 Pyocin Membrane-Piercing Spike, PDB code: 4s37:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 19 in 4s37

Go back to Chlorine Binding Sites List in 4s37
Chlorine binding site 1 out of 19 in the Crystal Structure of R2 Pyocin Membrane-Piercing Spike


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of R2 Pyocin Membrane-Piercing Spike within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:0.9
occ:1.00
 N A:GLY36 3.4 57.5 1.0
NH2 A:ARG34 3.7 46.0 0.5
O A:ARG34 3.8 44.8 0.5
O A:ARG34 3.9 44.3 0.5
CA A:SER35 4.0 46.4 1.0
C A:SER35 4.2 51.6 1.0
CZ A:ARG34 4.2 47.0 0.5
O A:HOH425 4.3 60.6 1.0
O A:PRO18 4.3 44.8 1.0
CA A:GLY36 4.3 54.8 1.0
NH1 A:ARG34 4.3 54.0 0.5
C A:ARG34 4.5 42.0 0.5
C A:ARG34 4.5 41.9 0.5
N A:SER35 4.7 43.6 1.0
CG1 A:VAL20 4.7 44.4 1.0
CA A:CYS19 4.7 39.0 1.0
O A:GLY36 4.9 53.7 1.0
C A:PRO18 5.0 44.5 1.0
N A:VAL20 5.0 42.2 1.0

Chlorine binding site 2 out of 19 in 4s37

Go back to Chlorine Binding Sites List in 4s37
Chlorine binding site 2 out of 19 in the Crystal Structure of R2 Pyocin Membrane-Piercing Spike


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of R2 Pyocin Membrane-Piercing Spike within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl204

b:92.1
occ:1.00
 NH2 C:ARG30 2.5 45.9 0.4
O C:ALA28 3.1 40.2 1.0
O C:ALA29 3.2 29.7 1.0
O B:HOH455 3.2 63.7 1.0
NE C:ARG30 3.3 45.7 0.6
CG C:ARG44 3.5 44.5 1.0
O C:HOH388 3.5 53.2 1.0
CZ C:ARG30 3.7 44.8 0.4
CD C:ARG30 3.7 38.8 0.6
CD C:ARG44 3.7 53.4 1.0
O B:HOH448 3.8 63.0 1.0
CB C:ALA29 3.9 31.9 1.0
C C:ALA29 4.0 33.0 1.0
O C:HOH309 4.0 31.2 1.0
CG C:ARG30 4.1 40.8 0.6
CD C:ARG30 4.2 39.3 0.4
CG C:ARG30 4.2 40.5 0.4
C C:ALA28 4.2 40.5 1.0
CZ C:ARG30 4.3 43.7 0.6
NE C:ARG30 4.3 39.8 0.4
CA C:ALA29 4.4 31.6 1.0
NH2 C:ARG30 4.5 31.1 0.6
NH1 C:ARG30 4.6 49.4 0.4
CB C:ARG44 4.7 39.7 1.0
O B:HOH313 4.7 31.9 1.0
CB B:TYR84 4.7 29.1 1.0
N C:ALA29 4.8 35.5 1.0
CD2 B:TYR84 4.8 29.9 1.0
N C:ARG30 4.9 30.5 0.6
N C:ARG30 4.9 31.2 0.4

Chlorine binding site 3 out of 19 in 4s37

Go back to Chlorine Binding Sites List in 4s37
Chlorine binding site 3 out of 19 in the Crystal Structure of R2 Pyocin Membrane-Piercing Spike


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of R2 Pyocin Membrane-Piercing Spike within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl205

b:79.8
occ:1.00
 O D:HOH437 2.7 82.6 1.0
OG D:SER75 3.4 63.5 1.0
N D:SER75 3.4 49.1 1.0
N D:VAL74 3.5 44.1 1.0
CB D:SER75 3.6 53.4 1.0
CA D:GLY73 3.7 48.6 1.0
C D:GLY73 3.7 47.5 1.0
CG2 D:VAL74 4.1 38.4 1.0
CA D:SER75 4.1 46.4 1.0
C D:VAL74 4.4 49.0 1.0
CA D:VAL74 4.4 43.0 1.0
O D:GLY73 4.5 43.1 1.0
O D:GLY72 4.7 51.3 1.0
CB D:VAL74 4.9 43.2 1.0
N D:GLY73 4.9 52.0 1.0

Chlorine binding site 4 out of 19 in 4s37

Go back to Chlorine Binding Sites List in 4s37
Chlorine binding site 4 out of 19 in the Crystal Structure of R2 Pyocin Membrane-Piercing Spike


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of R2 Pyocin Membrane-Piercing Spike within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl206

b:91.4
occ:1.00
 NE D:ARG30 2.7 68.6 1.0
O D:HOH403 2.7 56.0 1.0
NH2 D:ARG30 3.3 79.2 1.0
O D:HOH449 3.3 69.3 1.0
CZ D:ARG30 3.3 71.1 1.0
CG D:ARG44 3.4 40.2 1.0
O D:ALA28 3.5 41.0 1.0
CD D:ARG44 3.6 58.6 1.0
CD D:ARG30 3.6 62.1 1.0
CG D:ARG30 3.7 54.1 1.0
O D:HOH420 3.8 49.3 1.0
O D:ALA29 4.0 31.8 1.0
NH1 D:ARG30 4.5 60.3 1.0
C D:ALA28 4.8 40.7 1.0
CB D:ARG44 4.8 33.8 1.0
C D:ALA29 4.8 37.9 1.0
NE D:ARG44 4.8 60.0 1.0

Chlorine binding site 5 out of 19 in 4s37

Go back to Chlorine Binding Sites List in 4s37
Chlorine binding site 5 out of 19 in the Crystal Structure of R2 Pyocin Membrane-Piercing Spike


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of R2 Pyocin Membrane-Piercing Spike within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl202

b:93.9
occ:1.00
 OG E:SER75 3.4 64.6 1.0
N E:VAL74 3.5 58.4 1.0
CA E:GLY73 3.5 61.5 1.0
N E:SER75 3.6 52.0 1.0
C E:GLY73 3.7 58.2 1.0
CB E:SER75 3.8 56.3 1.0
CG2 E:VAL74 4.1 47.8 1.0
O E:HOH409 4.2 70.2 1.0
CA E:SER75 4.4 51.0 1.0
CA E:VAL74 4.4 58.9 1.0
O E:GLY72 4.4 69.0 1.0
OH J:TYR3 4.5 93.8 1.0
C E:VAL74 4.5 60.2 1.0
O E:GLY73 4.5 51.7 1.0
N E:GLY73 4.7 56.9 1.0
CB E:VAL74 4.9 58.5 1.0

Chlorine binding site 6 out of 19 in 4s37

Go back to Chlorine Binding Sites List in 4s37
Chlorine binding site 6 out of 19 in the Crystal Structure of R2 Pyocin Membrane-Piercing Spike


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of R2 Pyocin Membrane-Piercing Spike within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl203

b:95.9
occ:1.00
 O E:HOH376 2.9 60.1 1.0
NE E:ARG30 3.3 73.6 1.0
CG E:ARG44 3.5 56.8 1.0
CD E:ARG44 3.5 61.8 1.0
O E:ALA28 3.6 51.0 1.0
NH2 E:ARG30 3.6 60.4 1.0
CZ E:ARG30 3.8 73.3 1.0
CG E:ARG30 4.0 49.8 1.0
CD E:ARG30 4.1 66.5 1.0
O D:HOH441 4.2 52.2 1.0
O E:ALA29 4.3 46.6 1.0
CB E:ARG44 4.8 49.1 1.0
C E:ALA28 4.8 56.3 1.0
NH1 E:ARG30 4.9 68.2 1.0
NE E:ARG44 4.9 64.9 1.0
C E:ALA29 5.0 46.3 1.0

Chlorine binding site 7 out of 19 in 4s37

Go back to Chlorine Binding Sites List in 4s37
Chlorine binding site 7 out of 19 in the Crystal Structure of R2 Pyocin Membrane-Piercing Spike


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of R2 Pyocin Membrane-Piercing Spike within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl205

b:88.0
occ:1.00
 NE F:ARG30 2.5 64.9 1.0
O E:HOH423 2.8 49.8 1.0
CD F:ARG30 3.3 50.0 1.0
O F:ALA28 3.4 45.9 1.0
CZ F:ARG30 3.4 84.6 1.0
CG F:ARG44 3.4 43.6 1.0
O F:ALA29 3.4 32.1 1.0
NH2 F:ARG30 3.5 93.2 1.0
O F:HOH376 3.6 58.4 1.0
CD F:ARG44 3.7 51.5 1.0
CG F:ARG30 4.0 43.6 1.0
C F:ALA29 4.2 37.5 1.0
CB F:ALA29 4.4 29.3 1.0
C F:ALA28 4.6 49.3 1.0
NH1 F:ARG30 4.6 85.8 1.0
O F:HOH331 4.7 33.0 1.0
CB F:ARG44 4.7 38.5 1.0
CA F:ALA29 4.8 36.3 1.0
CB E:TYR84 5.0 36.1 1.0

Chlorine binding site 8 out of 19 in 4s37

Go back to Chlorine Binding Sites List in 4s37
Chlorine binding site 8 out of 19 in the Crystal Structure of R2 Pyocin Membrane-Piercing Spike


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of R2 Pyocin Membrane-Piercing Spike within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl204

b:89.7
occ:1.00
 NE G:ARG30 2.5 77.5 1.0
CZ G:ARG30 3.2 81.6 1.0
NH1 G:ARG30 3.2 73.3 1.0
O G:HOH364 3.2 42.6 1.0
O I:HOH386 3.3 54.8 1.0
CG G:ARG44 3.4 33.4 1.0
CD G:ARG30 3.4 63.7 1.0
CG G:ARG30 3.4 40.0 1.0
O G:ALA28 3.7 39.9 1.0
CD G:ARG44 3.8 43.6 1.0
O I:HOH420 3.9 60.9 1.0
O G:ALA29 4.1 28.9 1.0
NH2 G:ARG30 4.3 83.9 1.0
O J:HOH410 4.7 46.7 1.0
O J:HOH402 4.7 46.4 1.0
O G:HOH399 4.8 72.0 1.0
CB G:ARG44 4.8 42.4 1.0
C G:ALA29 4.8 33.5 1.0
CB G:ARG30 4.8 39.0 1.0
C G:ALA28 4.9 39.4 1.0
NE G:ARG44 4.9 41.5 1.0
O J:HOH413 4.9 47.0 1.0

Chlorine binding site 9 out of 19 in 4s37

Go back to Chlorine Binding Sites List in 4s37
Chlorine binding site 9 out of 19 in the Crystal Structure of R2 Pyocin Membrane-Piercing Spike


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of R2 Pyocin Membrane-Piercing Spike within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl205

b:65.3
occ:1.00
 O J:HOH446 2.4 58.5 1.0
O J:HOH447 2.4 76.0 1.0
O J:HOH439 3.4 35.4 1.0
NE1 G:TRP42 3.6 36.4 1.0
NH2 J:ARG32 4.0 39.4 1.0
NH1 J:ARG32 4.0 35.5 1.0
NH1 G:ARG32 4.1 64.3 1.0
CZ J:ARG32 4.5 40.4 1.0
CE2 G:TRP42 4.5 36.9 1.0
CD1 G:TRP42 4.5 36.0 1.0
O G:HOH422 4.7 60.4 1.0
CZ2 G:TRP42 4.7 34.3 1.0
CA J:GLY41 4.7 32.4 1.0
O G:HOH413 4.8 61.5 1.0
O J:HOH422 4.8 69.7 1.0

Chlorine binding site 10 out of 19 in 4s37

Go back to Chlorine Binding Sites List in 4s37
Chlorine binding site 10 out of 19 in the Crystal Structure of R2 Pyocin Membrane-Piercing Spike


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of R2 Pyocin Membrane-Piercing Spike within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl206

b:99.8
occ:1.00
 N H:VAL74 3.2 54.7 1.0
N H:SER75 3.3 51.5 1.0
CA H:GLY73 3.4 51.5 1.0
OG H:SER75 3.4 61.8 1.0
C H:GLY73 3.4 52.6 1.0
CB H:SER75 3.6 52.1 1.0
CG2 H:VAL74 4.1 42.0 1.0
CA H:SER75 4.1 49.7 1.0
O H:GLY73 4.2 47.6 1.0
CA H:VAL74 4.2 46.8 1.0
C H:VAL74 4.2 56.3 1.0
O H:GLY72 4.5 48.0 1.0
N H:GLY73 4.7 53.2 1.0
CB H:VAL74 4.8 46.9 1.0

Reference:

C.B.Browning, P.G.Leiman, M.M.Shneider. Crystal Structure of R2 Pyocin Membrane-Piercing Spike To Be Published.
Page generated: Fri Jul 26 01:43:59 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy