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Chlorine in PDB 4tlc: Crystal Structure of N-Terminal C1 Domain of Kaic

Enzymatic activity of Crystal Structure of N-Terminal C1 Domain of Kaic

All present enzymatic activity of Crystal Structure of N-Terminal C1 Domain of Kaic:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of N-Terminal C1 Domain of Kaic, PDB code: 4tlc was solved by J.Abe, T.B.Hiyama, A.Mukaiyama, S.Son, S.Akiyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.30 / 2.09
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 79.880, 133.378, 149.584, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 21.9

Other elements in 4tlc:

The structure of Crystal Structure of N-Terminal C1 Domain of Kaic also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of N-Terminal C1 Domain of Kaic (pdb code 4tlc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of N-Terminal C1 Domain of Kaic, PDB code: 4tlc:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 4tlc

Go back to Chlorine Binding Sites List in 4tlc
Chlorine binding site 1 out of 6 in the Crystal Structure of N-Terminal C1 Domain of Kaic


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of N-Terminal C1 Domain of Kaic within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:25.2
occ:1.00
 N A:ILE239 3.2 20.4 1.0
O B:HOH437 3.2 22.7 1.0
NE A:ARG218 3.2 24.4 1.0
O A:HOH511 3.6 35.6 1.0
O B:HOH548 3.7 39.4 1.0
CA A:THR238 3.7 30.2 1.0
CD A:ARG218 3.8 21.7 1.0
O A:ILE239 3.8 28.6 1.0
CB A:THR238 3.9 30.7 1.0
C A:THR238 4.0 27.9 1.0
NZ B:LYS232 4.1 25.0 1.0
CA A:ILE239 4.2 20.5 1.0
CZ A:ARG218 4.3 25.2 1.0
CG2 A:THR238 4.3 32.1 1.0
CE B:LYS232 4.3 26.3 1.0
O A:HOH441 4.3 38.7 1.0
CG A:ARG218 4.4 19.4 1.0
CB A:ILE239 4.4 26.1 1.0
C A:ILE239 4.4 28.2 1.0
NH2 A:ARG218 4.5 23.4 1.0
O A:PHE237 4.8 24.0 1.0
CG1 A:ILE239 4.9 21.6 1.0

Chlorine binding site 2 out of 6 in 4tlc

Go back to Chlorine Binding Sites List in 4tlc
Chlorine binding site 2 out of 6 in the Crystal Structure of N-Terminal C1 Domain of Kaic


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of N-Terminal C1 Domain of Kaic within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:24.0
occ:1.00
 O B:HOH430 3.1 20.8 1.0
NE B:ARG218 3.2 18.5 1.0
N B:ILE239 3.2 18.0 1.0
O C:HOH447 3.5 42.0 1.0
O B:HOH478 3.6 46.9 1.0
O B:HOH507 3.6 34.5 1.0
CA B:THR238 3.7 21.4 1.0
CD B:ARG218 3.7 17.2 1.0
O B:ILE239 3.9 26.2 1.0
CB B:THR238 3.9 21.7 1.0
C B:THR238 4.0 25.7 1.0
O B:HOH453 4.0 34.7 1.0
CA B:ILE239 4.1 24.1 1.0
CZ B:ARG218 4.2 24.1 1.0
CB B:ILE239 4.3 18.3 1.0
CE C:LYS232 4.3 30.9 1.0
NZ C:LYS232 4.3 26.9 1.0
CG B:ARG218 4.4 19.5 1.0
NH2 B:ARG218 4.4 17.1 1.0
C B:ILE239 4.4 24.6 1.0
CG2 B:THR238 4.5 18.1 1.0
CG1 B:ILE239 4.7 22.1 1.0
O B:PHE237 4.8 23.5 1.0
N B:THR238 5.0 24.5 1.0

Chlorine binding site 3 out of 6 in 4tlc

Go back to Chlorine Binding Sites List in 4tlc
Chlorine binding site 3 out of 6 in the Crystal Structure of N-Terminal C1 Domain of Kaic


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of N-Terminal C1 Domain of Kaic within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:24.1
occ:1.00
 O D:HOH530 3.0 16.7 1.0
N C:ILE239 3.2 24.2 1.0
NE C:ARG218 3.2 16.7 1.0
CA C:THR238 3.6 21.7 1.0
CD C:ARG218 3.7 15.6 1.0
CB C:THR238 3.7 29.5 1.0
O C:HOH554 3.8 35.3 1.0
O C:ILE239 3.9 23.8 1.0
C C:THR238 3.9 22.2 1.0
CG2 C:THR238 4.1 30.1 1.0
CA C:ILE239 4.1 23.0 1.0
CB C:ILE239 4.3 21.7 1.0
CZ C:ARG218 4.3 18.8 1.0
CG C:ARG218 4.4 15.5 1.0
O C:HOH508 4.4 34.6 1.0
C C:ILE239 4.5 31.9 1.0
NH1 C:ARG218 4.5 18.5 1.0
CE D:LYS232 4.5 53.3 1.0
NZ D:LYS232 4.5 54.1 1.0
CG1 C:ILE239 4.6 17.9 1.0
O C:PHE237 4.8 21.7 1.0
CD D:LYS232 4.9 50.9 1.0
N C:THR238 4.9 19.9 1.0

Chlorine binding site 4 out of 6 in 4tlc

Go back to Chlorine Binding Sites List in 4tlc
Chlorine binding site 4 out of 6 in the Crystal Structure of N-Terminal C1 Domain of Kaic


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of N-Terminal C1 Domain of Kaic within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl302

b:21.9
occ:1.00
 O E:HOH426 3.2 18.7 1.0
N D:ILE239 3.2 16.7 1.0
NE D:ARG218 3.2 17.9 1.0
O D:HOH472 3.6 43.7 1.0
O E:HOH448 3.6 36.9 1.0
CA D:THR238 3.7 24.3 1.0
CD D:ARG218 3.7 15.8 1.0
O D:HOH515 3.7 33.5 1.0
O D:ILE239 3.8 19.0 1.0
CB D:THR238 3.9 21.4 1.0
C D:THR238 3.9 22.2 1.0
NZ E:LYS232 4.1 21.6 1.0
CA D:ILE239 4.2 21.7 1.0
CG D:ARG218 4.3 15.0 1.0
CZ D:ARG218 4.3 15.4 1.0
CB D:ILE239 4.4 17.9 1.0
C D:ILE239 4.4 21.5 1.0
CG2 D:THR238 4.4 22.4 1.0
CE E:LYS232 4.4 24.7 1.0
NH2 D:ARG218 4.5 15.6 1.0
O D:HOH448 4.5 24.1 1.0
O D:PHE237 4.8 15.6 1.0
CG1 D:ILE239 4.9 18.0 1.0
N D:THR238 5.0 18.0 1.0

Chlorine binding site 5 out of 6 in 4tlc

Go back to Chlorine Binding Sites List in 4tlc
Chlorine binding site 5 out of 6 in the Crystal Structure of N-Terminal C1 Domain of Kaic


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of N-Terminal C1 Domain of Kaic within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl302

b:23.3
occ:1.00
 O F:HOH437 3.1 20.3 1.0
NE E:ARG218 3.1 13.8 1.0
N E:ILE239 3.1 17.1 1.0
O E:HOH505 3.5 29.7 1.0
CD E:ARG218 3.7 15.0 1.0
CA E:THR238 3.7 17.9 1.0
O E:HOH537 3.7 44.2 1.0
O E:ILE239 3.8 22.2 1.0
CB E:THR238 3.9 23.2 1.0
C E:THR238 3.9 20.4 1.0
CA E:ILE239 4.1 20.1 1.0
CZ E:ARG218 4.2 24.9 1.0
O E:HOH507 4.3 30.8 1.0
CB E:ILE239 4.3 17.2 1.0
CG E:ARG218 4.3 13.5 1.0
NH2 E:ARG218 4.4 16.6 1.0
NZ F:LYS232 4.4 36.9 1.0
CG2 E:THR238 4.4 34.6 1.0
C E:ILE239 4.4 25.1 1.0
CE F:LYS232 4.4 32.2 1.0
CG1 E:ILE239 4.7 17.3 1.0
O E:HOH455 4.8 40.5 1.0
O E:PHE237 4.8 18.7 1.0
N E:THR238 5.0 18.4 1.0
O E:HOH420 5.0 17.2 1.0

Chlorine binding site 6 out of 6 in 4tlc

Go back to Chlorine Binding Sites List in 4tlc
Chlorine binding site 6 out of 6 in the Crystal Structure of N-Terminal C1 Domain of Kaic


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of N-Terminal C1 Domain of Kaic within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl302

b:22.9
occ:1.00
 NE F:ARG218 3.1 17.5 1.0
O A:HOH477 3.1 29.9 1.0
N F:ILE239 3.2 16.9 1.0
O A:HOH428 3.5 34.9 1.0
O F:HOH480 3.6 52.0 1.0
CA F:THR238 3.7 16.4 1.0
CD F:ARG218 3.7 18.4 1.0
O F:HOH496 3.8 32.9 1.0
CB F:THR238 3.8 26.1 1.0
O F:ILE239 3.8 22.8 1.0
C F:THR238 3.9 20.9 1.0
NZ A:LYS232 4.0 30.6 1.0
CA F:ILE239 4.1 18.7 1.0
CE A:LYS232 4.1 24.5 1.0
CZ F:ARG218 4.2 16.1 1.0
CB F:ILE239 4.2 18.5 1.0
NH1 F:ARG218 4.3 16.4 1.0
CG F:ARG218 4.4 16.6 1.0
C F:ILE239 4.4 25.4 1.0
CG2 F:THR238 4.4 26.0 1.0
O F:HOH495 4.5 25.0 1.0
CG1 F:ILE239 4.8 19.6 1.0
O F:PHE237 4.9 17.3 1.0
CG A:LYS232 4.9 21.8 1.0
N F:THR238 5.0 16.4 1.0

Reference:

J.Abe, T.B.Hiyama, A.Mukaiyama, S.Son, T.Mori, S.Saito, M.Osako, J.Wolanin, E.Yamashita, T.Kondo, S.Akiyama. Atomic-Scale Origins of Slowness in the Cyanobacterial Circadian Clock Science V. 349 312 2015.
ISSN: ESSN 1095-9203
PubMed: 26113637
DOI: 10.1126/SCIENCE.1261040
Page generated: Fri Jul 26 01:45:29 2024

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