Atomistry » Chlorine » PDB 4tsq-4u1a » 4ttt
Atomistry »
  Chlorine »
    PDB 4tsq-4u1a »
      4ttt »

Chlorine in PDB 4ttt: Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State) - 3

Enzymatic activity of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State) - 3

All present enzymatic activity of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State) - 3:
1.12.99.6;

Protein crystallography data

The structure of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State) - 3, PDB code: 4ttt was solved by A.Schmidt, J.Kalms, P.Scheerer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.83 / 1.72
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.774, 95.570, 119.228, 90.00, 90.00, 90.00
R / Rfree (%) 13.4 / 16.5

Other elements in 4ttt:

The structure of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State) - 3 also contains other interesting chemical elements:

Nickel (Ni) 1 atom
Magnesium (Mg) 1 atom
Iron (Fe) 12 atoms
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State) - 3 (pdb code 4ttt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State) - 3, PDB code: 4ttt:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4ttt

Go back to Chlorine Binding Sites List in 4ttt
Chlorine binding site 1 out of 3 in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State) - 3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State) - 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl704

b:34.5
occ:1.00
 O L:HOH962 2.7 21.4 1.0
O L:HOH973 2.7 26.2 1.0
NE L:ARG88 2.9 19.1 1.0
NH1 L:ARG106 3.1 19.7 1.0
CD L:ARG106 3.4 17.7 1.0
NH2 L:ARG88 3.6 19.8 1.0
CG L:ARG88 3.7 18.1 1.0
CZ L:ARG88 3.7 19.2 1.0
CD1 L:ILE98 3.7 21.1 1.0
CD1 L:LEU84 3.8 17.5 1.0
CD L:ARG88 3.9 18.2 1.0
CZ L:ARG106 4.1 18.2 1.0
NE L:ARG106 4.2 17.5 1.0
O L:HOH1047 4.3 26.8 1.0
O L:HOH1102 4.4 32.7 1.0
CB L:ARG106 4.5 18.1 1.0
O L:HOH926 4.5 21.6 1.0
CG L:ARG106 4.6 17.9 1.0
O L:HOH1134 4.6 32.7 1.0
ND1 L:HIS103 4.8 25.7 1.0
OE1 L:GLU91 4.9 19.7 1.0
CG1 L:ILE98 5.0 21.5 1.0
CG L:LEU84 5.0 15.9 1.0

Chlorine binding site 2 out of 3 in 4ttt

Go back to Chlorine Binding Sites List in 4ttt
Chlorine binding site 2 out of 3 in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State) - 3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State) - 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Cl1004

b:28.1
occ:1.00
 O S:HOH1156 3.1 22.9 1.0
N S:CYS120 3.2 17.7 1.0
N S:GLY256 3.2 22.1 1.0
O S:HOH1168 3.3 28.3 1.0
CA S:CYS120 3.5 17.2 1.0
CB S:TRP118 3.6 22.5 1.0
CA S:GLY256 3.9 22.7 1.0
O S:GLU254 4.2 21.6 1.0
CD1 S:PHE257 4.2 20.6 1.0
C S:ASP255 4.2 21.9 1.0
N S:GLY119 4.3 21.0 1.0
N S:PHE257 4.3 19.5 1.0
C S:TRP118 4.3 22.4 1.0
C S:GLY119 4.3 19.3 1.0
CE1 S:PHE257 4.4 19.4 1.0
CA S:ASP255 4.4 21.1 1.0
C S:CYS120 4.4 17.6 1.0
CD1 S:TRP258 4.4 18.2 1.0
O S:CYS120 4.5 18.4 1.0
CB S:CYS120 4.5 17.2 1.0
CB S:SER114 4.5 17.4 1.0
C S:GLY256 4.5 21.1 1.0
O S:SER114 4.6 20.4 1.0
CG S:TRP118 4.6 22.9 1.0
CA S:TRP118 4.6 22.4 1.0
O S:TRP118 4.6 22.1 1.0
CA S:GLY119 4.6 19.9 1.0
OD1 S:ASP255 4.7 25.2 1.0
O S:HOH1196 4.7 24.6 1.0
O S:HOH1238 4.7 36.3 1.0
NE1 S:TRP258 4.8 18.4 1.0
CD1 S:TRP118 4.8 22.9 1.0
C S:GLU254 5.0 21.0 1.0

Chlorine binding site 3 out of 3 in 4ttt

Go back to Chlorine Binding Sites List in 4ttt
Chlorine binding site 3 out of 3 in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State) - 3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State) - 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Cl1005

b:58.1
occ:1.00
 O S:HOH1147 3.0 29.7 1.0
CD2 S:LEU267 3.5 27.9 1.0
CE S:LYS222 3.6 22.4 1.0
CD S:LYS222 3.8 21.3 1.0
CB S:LYS260 3.8 26.0 1.0
CD S:LYS260 3.9 29.2 1.0
O S:LYS260 4.2 31.5 1.0
CG S:LYS222 4.4 20.9 1.0
OG1 S:THR225 4.4 25.9 1.0
CG S:LYS260 4.4 27.3 1.0
O S:HOH1179 4.5 31.4 1.0
O S:HOH1174 4.6 25.0 1.0
CG S:LEU267 4.7 25.2 1.0
O S:HOH1250 4.7 38.3 1.0
O S:HOH1176 4.7 27.9 1.0
O S:HOH1171 4.8 30.1 1.0
O S:HOH1220 4.9 36.8 1.0
NZ S:LYS222 4.9 22.2 1.0
CA S:LYS260 5.0 25.6 1.0
C S:LYS260 5.0 27.2 1.0

Reference:

A.Schmidt, J.Kalms, S.Frielingsdorf, R.Evans, J.Fritsch, F.Armstrong, O.Lenz, P.Scheerer. Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State) - 3 To Be Published.
Page generated: Fri Jul 26 01:55:42 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy