Chlorine in PDB 4tws: Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution
Enzymatic activity of Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution
All present enzymatic activity of Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution:
3.2.1.17;
Protein crystallography data
The structure of Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution, PDB code: 4tws
was solved by
J.M.Holton,
S.Classen,
K.A.Frankel,
J.A.Tainer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.61 /
1.45
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
77.220,
77.220,
38.810,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
13.8 /
16.1
|
Other elements in 4tws:
The structure of Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution also contains other interesting chemical elements:
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
13;
Binding sites:
The binding sites of Chlorine atom in the Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution
(pdb code 4tws). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 13 binding sites of Chlorine where determined in the
Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution, PDB code: 4tws:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 13 in 4tws
Go back to
Chlorine Binding Sites List in 4tws
Chlorine binding site 1 out
of 13 in the Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl207
b:11.4
occ:0.85
|
OH
|
A:TYR23
|
2.9
|
8.2
|
1.0
|
O
|
A:HOH407
|
3.1
|
35.1
|
1.0
|
HE2
|
A:TYR23
|
3.1
|
8.1
|
1.0
|
HA3
|
A:GLY104
|
3.3
|
10.4
|
1.0
|
O
|
A:HOH351
|
3.3
|
47.4
|
1.0
|
NA
|
A:NA220
|
3.3
|
18.4
|
1.0
|
HH
|
A:TYR23
|
3.5
|
9.9
|
1.0
|
CZ
|
A:TYR23
|
3.6
|
6.3
|
1.0
|
CE2
|
A:TYR23
|
3.6
|
6.8
|
1.0
|
HA2
|
A:GLY104
|
4.1
|
10.4
|
1.0
|
CA
|
A:GLY104
|
4.1
|
8.7
|
1.0
|
O
|
A:ARG21
|
4.6
|
10.8
|
1.0
|
H
|
A:MET105
|
4.6
|
8.4
|
1.0
|
HH21
|
A:ARG21
|
4.6
|
44.4
|
1.0
|
N
|
A:GLY104
|
4.8
|
8.6
|
1.0
|
HE
|
A:ARG21
|
4.8
|
43.9
|
1.0
|
CE1
|
A:TYR23
|
4.8
|
6.3
|
1.0
|
HB3
|
A:ARG21
|
4.8
|
17.3
|
1.0
|
CD2
|
A:TYR23
|
4.9
|
6.3
|
1.0
|
O
|
A:HOH338
|
4.9
|
19.5
|
1.0
|
H
|
A:GLY104
|
5.0
|
10.3
|
1.0
|
|
Chlorine binding site 2 out
of 13 in 4tws
Go back to
Chlorine Binding Sites List in 4tws
Chlorine binding site 2 out
of 13 in the Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl208
b:12.5
occ:0.96
|
H
|
A:GLY26
|
2.4
|
7.8
|
1.0
|
HG
|
A:SER24
|
2.7
|
13.1
|
1.0
|
HA
|
A:GLN121
|
2.8
|
10.6
|
1.0
|
HA3
|
A:GLY26
|
3.0
|
7.8
|
1.0
|
HB2
|
A:SER24
|
3.0
|
11.3
|
1.0
|
OG
|
A:SER24
|
3.0
|
10.9
|
1.0
|
O
|
A:HOH508
|
3.1
|
27.9
|
1.0
|
N
|
A:GLY26
|
3.1
|
6.5
|
1.0
|
O
|
A:HOH546
|
3.2
|
27.7
|
1.0
|
HG23
|
A:VAL120
|
3.4
|
13.1
|
1.0
|
HD12
|
A:ILE124
|
3.4
|
22.4
|
1.0
|
O
|
A:HOH450
|
3.5
|
29.4
|
1.0
|
CB
|
A:SER24
|
3.5
|
9.4
|
1.0
|
CA
|
A:GLY26
|
3.5
|
6.5
|
1.0
|
CA
|
A:GLN121
|
3.6
|
8.8
|
1.0
|
HD13
|
A:ILE124
|
3.6
|
22.4
|
1.0
|
HG2
|
A:GLN121
|
3.6
|
16.1
|
1.0
|
HG12
|
A:ILE124
|
3.7
|
18.7
|
1.0
|
HB2
|
A:GLN121
|
3.7
|
14.0
|
1.0
|
CD1
|
A:ILE124
|
3.9
|
18.6
|
1.0
|
N
|
A:GLN121
|
4.0
|
9.3
|
1.0
|
H
|
A:LEU25
|
4.0
|
9.8
|
1.0
|
CB
|
A:GLN121
|
4.1
|
11.7
|
1.0
|
N
|
A:LEU25
|
4.1
|
8.2
|
1.0
|
HA2
|
A:GLY26
|
4.2
|
7.8
|
1.0
|
HB3
|
A:SER24
|
4.2
|
11.3
|
1.0
|
H
|
A:ASN27
|
4.2
|
7.6
|
1.0
|
HB3
|
A:LEU25
|
4.3
|
9.2
|
1.0
|
C
|
A:SER24
|
4.3
|
9.4
|
1.0
|
C
|
A:VAL120
|
4.3
|
9.4
|
1.0
|
CG
|
A:GLN121
|
4.3
|
13.4
|
1.0
|
H
|
A:GLN121
|
4.3
|
11.2
|
1.0
|
O
|
A:VAL120
|
4.3
|
9.6
|
1.0
|
C
|
A:LEU25
|
4.3
|
7.3
|
1.0
|
CG2
|
A:VAL120
|
4.3
|
10.9
|
1.0
|
CG1
|
A:ILE124
|
4.3
|
15.6
|
1.0
|
CA
|
A:SER24
|
4.5
|
8.4
|
1.0
|
HG22
|
A:VAL120
|
4.5
|
13.1
|
1.0
|
HG3
|
A:GLN121
|
4.6
|
16.1
|
1.0
|
C
|
A:GLY26
|
4.6
|
6.1
|
1.0
|
CA
|
A:LEU25
|
4.7
|
7.9
|
1.0
|
N
|
A:ASN27
|
4.7
|
6.4
|
1.0
|
HB
|
A:VAL120
|
4.7
|
12.5
|
1.0
|
O
|
A:SER24
|
4.8
|
9.2
|
1.0
|
HD11
|
A:ILE124
|
4.8
|
22.4
|
1.0
|
C
|
A:GLN121
|
4.8
|
8.8
|
1.0
|
HG13
|
A:ILE124
|
4.8
|
18.7
|
1.0
|
HG21
|
A:VAL120
|
4.9
|
13.1
|
1.0
|
HG23
|
A:ILE124
|
5.0
|
16.6
|
1.0
|
CB
|
A:LEU25
|
5.0
|
7.7
|
1.0
|
HG22
|
A:ILE124
|
5.0
|
16.6
|
1.0
|
O
|
A:HOH433
|
5.0
|
20.2
|
1.0
|
HB3
|
A:GLN121
|
5.0
|
14.0
|
1.0
|
|
Chlorine binding site 3 out
of 13 in 4tws
Go back to
Chlorine Binding Sites List in 4tws
Chlorine binding site 3 out
of 13 in the Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl209
b:15.6
occ:0.96
|
H
|
A:THR69
|
2.4
|
12.9
|
1.0
|
O
|
A:HOH556
|
2.9
|
34.4
|
1.0
|
HA2
|
A:GLY67
|
3.1
|
13.7
|
1.0
|
O
|
A:HOH514
|
3.1
|
10.0
|
1.0
|
H
|
A:GLY67
|
3.1
|
12.3
|
1.0
|
HG
|
A:SER72
|
3.2
|
16.0
|
1.0
|
O
|
A:HOH544
|
3.2
|
28.6
|
1.0
|
N
|
A:THR69
|
3.3
|
10.8
|
1.0
|
O
|
A:THR69
|
3.4
|
11.6
|
1.0
|
H
|
A:ARG68
|
3.4
|
13.6
|
0.3
|
O
|
A:HOH545
|
3.4
|
27.6
|
1.0
|
H
|
A:ARG68
|
3.4
|
13.3
|
0.7
|
CA
|
A:GLY67
|
3.5
|
11.4
|
1.0
|
N
|
A:ARG68
|
3.5
|
11.3
|
0.3
|
N
|
A:ARG68
|
3.5
|
11.1
|
0.7
|
OD1
|
A:ASN65
|
3.5
|
13.5
|
1.0
|
C
|
A:GLY67
|
3.6
|
13.2
|
1.0
|
N
|
A:GLY67
|
3.6
|
10.2
|
1.0
|
C
|
A:THR69
|
3.6
|
11.0
|
1.0
|
HB
|
A:THR69
|
3.7
|
11.6
|
1.0
|
OG
|
A:SER72
|
3.7
|
13.3
|
1.0
|
CA
|
A:THR69
|
3.9
|
11.8
|
1.0
|
O
|
A:HOH521
|
4.0
|
14.3
|
1.0
|
HA
|
A:PRO70
|
4.1
|
20.1
|
1.0
|
H
|
A:ASP66
|
4.1
|
8.9
|
1.0
|
OD1
|
A:ASP66
|
4.2
|
8.1
|
1.0
|
O
|
A:GLY67
|
4.3
|
16.0
|
1.0
|
C
|
A:ARG68
|
4.3
|
11.1
|
0.3
|
CB
|
A:THR69
|
4.3
|
9.6
|
1.0
|
N
|
A:PRO70
|
4.3
|
15.0
|
1.0
|
C
|
A:ARG68
|
4.3
|
11.1
|
0.7
|
CA
|
A:ARG68
|
4.3
|
10.8
|
0.3
|
CA
|
A:ARG68
|
4.4
|
10.9
|
0.7
|
HA
|
A:ARG68
|
4.4
|
13.0
|
0.3
|
HA3
|
A:GLY67
|
4.4
|
13.7
|
1.0
|
HG1
|
A:THR69
|
4.5
|
10.5
|
1.0
|
H
|
A:SER72
|
4.5
|
18.0
|
1.0
|
HA
|
A:ARG68
|
4.5
|
13.1
|
0.7
|
O
|
A:HOH404
|
4.6
|
34.7
|
1.0
|
CA
|
A:PRO70
|
4.6
|
16.7
|
1.0
|
C
|
A:ASP66
|
4.7
|
9.5
|
1.0
|
CG
|
A:ASN65
|
4.7
|
10.8
|
1.0
|
HA
|
A:ASN65
|
4.8
|
10.7
|
1.0
|
N
|
A:ASP66
|
4.8
|
7.4
|
1.0
|
NA
|
A:NA221
|
4.8
|
9.4
|
0.9
|
O
|
A:HOH349
|
4.8
|
26.0
|
1.0
|
O
|
A:HOH561
|
4.8
|
32.3
|
1.0
|
HA
|
A:THR69
|
4.8
|
14.2
|
1.0
|
OG1
|
A:THR69
|
4.9
|
8.7
|
1.0
|
CB
|
A:SER72
|
5.0
|
14.4
|
1.0
|
|
Chlorine binding site 4 out
of 13 in 4tws
Go back to
Chlorine Binding Sites List in 4tws
Chlorine binding site 4 out
of 13 in the Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl210
b:11.9
occ:0.48
|
O
|
A:HOH441
|
1.3
|
18.0
|
1.0
|
H
|
A:ILE88
|
2.5
|
11.9
|
1.0
|
O
|
A:HOH465
|
2.5
|
35.2
|
1.0
|
HG12
|
A:ILE88
|
2.7
|
13.2
|
1.0
|
HZ
|
A:PHE3
|
2.9
|
12.7
|
1.0
|
HA
|
A:ASP87
|
2.9
|
14.6
|
1.0
|
O
|
A:HOH315
|
3.1
|
30.4
|
1.0
|
O
|
A:HOH353
|
3.1
|
21.3
|
1.0
|
O
|
A:HOH420
|
3.2
|
33.1
|
1.0
|
N
|
A:ILE88
|
3.3
|
9.9
|
1.0
|
HG23
|
A:ILE88
|
3.3
|
13.8
|
1.0
|
HB2
|
A:ALA11
|
3.5
|
12.2
|
1.0
|
HH22
|
A:ARG14
|
3.6
|
22.7
|
1.0
|
HE1
|
A:HIS15
|
3.6
|
17.4
|
1.0
|
CG1
|
A:ILE88
|
3.7
|
11.0
|
1.0
|
CZ
|
A:PHE3
|
3.8
|
10.6
|
1.0
|
O
|
A:SER86
|
3.8
|
15.4
|
0.7
|
O
|
A:SER86
|
3.8
|
12.2
|
0.3
|
CA
|
A:ASP87
|
3.8
|
12.2
|
1.0
|
HE2
|
A:PHE3
|
3.9
|
11.8
|
1.0
|
HB1
|
A:ALA11
|
4.1
|
12.2
|
1.0
|
HG13
|
A:ILE88
|
4.1
|
13.2
|
1.0
|
C
|
A:ASP87
|
4.1
|
11.5
|
1.0
|
CG2
|
A:ILE88
|
4.1
|
11.5
|
1.0
|
HH21
|
A:ARG14
|
4.1
|
22.7
|
1.0
|
NH2
|
A:ARG14
|
4.2
|
18.9
|
1.0
|
CB
|
A:ALA11
|
4.2
|
10.2
|
1.0
|
CB
|
A:ILE88
|
4.2
|
10.1
|
1.0
|
OD1
|
A:ASP87
|
4.2
|
15.1
|
1.0
|
CE2
|
A:PHE3
|
4.3
|
9.9
|
1.0
|
CA
|
A:ILE88
|
4.3
|
9.8
|
1.0
|
HG22
|
A:ILE88
|
4.5
|
13.8
|
1.0
|
CE1
|
A:HIS15
|
4.5
|
14.5
|
1.0
|
HD13
|
A:ILE88
|
4.6
|
15.0
|
1.0
|
HZ2
|
A:LYS1
|
4.6
|
26.0
|
1.0
|
CD1
|
A:ILE88
|
4.6
|
12.5
|
1.0
|
HB3
|
A:ALA11
|
4.6
|
12.2
|
1.0
|
HD12
|
A:ILE88
|
4.7
|
15.0
|
1.0
|
C
|
A:SER86
|
4.7
|
10.8
|
0.7
|
C
|
A:SER86
|
4.7
|
10.9
|
0.3
|
CG
|
A:ASP87
|
4.7
|
16.2
|
1.0
|
N
|
A:ASP87
|
4.7
|
10.8
|
1.0
|
CB
|
A:ASP87
|
4.8
|
13.9
|
1.0
|
H
|
A:THR89
|
4.8
|
12.3
|
1.0
|
HG21
|
A:ILE88
|
4.9
|
13.8
|
1.0
|
O
|
A:HOH436
|
4.9
|
27.2
|
1.0
|
HD1
|
A:HIS15
|
4.9
|
21.0
|
1.0
|
CE1
|
A:PHE3
|
4.9
|
10.9
|
1.0
|
HB2
|
A:ASP87
|
5.0
|
16.6
|
1.0
|
|
Chlorine binding site 5 out
of 13 in 4tws
Go back to
Chlorine Binding Sites List in 4tws
Chlorine binding site 5 out
of 13 in the Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl211
b:11.0
occ:0.56
|
HE
|
A:ARG68
|
1.9
|
14.3
|
0.7
|
HG1
|
A:THR51
|
2.0
|
9.7
|
1.0
|
HE
|
A:ARG68
|
2.2
|
8.8
|
0.3
|
NE
|
A:ARG68
|
2.7
|
11.9
|
0.7
|
HG3
|
A:ARG68
|
2.7
|
10.8
|
0.3
|
OG1
|
A:THR51
|
2.7
|
8.1
|
1.0
|
OD2
|
A:ASP66
|
2.7
|
8.3
|
1.0
|
HG3
|
A:ARG68
|
2.8
|
13.7
|
0.7
|
O
|
A:GLY49
|
2.8
|
10.5
|
1.0
|
HA
|
A:SER50
|
3.0
|
9.1
|
1.0
|
HG1
|
A:THR69
|
3.0
|
10.5
|
1.0
|
OG1
|
A:THR69
|
3.0
|
8.7
|
1.0
|
NE
|
A:ARG68
|
3.0
|
7.3
|
0.3
|
HD3
|
A:ARG68
|
3.3
|
14.8
|
0.7
|
HH21
|
A:ARG68
|
3.3
|
10.6
|
0.7
|
HB
|
A:THR51
|
3.3
|
9.4
|
1.0
|
CD
|
A:ARG68
|
3.3
|
12.3
|
0.7
|
H
|
A:THR51
|
3.3
|
8.0
|
1.0
|
N
|
A:THR51
|
3.4
|
6.6
|
1.0
|
HH21
|
A:ARG68
|
3.4
|
8.1
|
0.3
|
CG
|
A:ARG68
|
3.5
|
9.0
|
0.3
|
CB
|
A:THR51
|
3.5
|
7.8
|
1.0
|
C
|
A:SER50
|
3.5
|
7.3
|
1.0
|
CG
|
A:ARG68
|
3.5
|
11.4
|
0.7
|
O
|
A:ARG68
|
3.6
|
9.6
|
0.7
|
HE
|
A:ARG45
|
3.6
|
12.9
|
0.7
|
CG
|
A:ASP66
|
3.6
|
7.7
|
1.0
|
HH
|
A:TYR53
|
3.6
|
10.5
|
1.0
|
CA
|
A:SER50
|
3.6
|
7.6
|
1.0
|
CZ
|
A:ARG68
|
3.7
|
11.3
|
0.7
|
HG2
|
A:ARG68
|
3.7
|
10.8
|
0.3
|
OG
|
A:SER60
|
3.8
|
7.3
|
1.0
|
CD
|
A:ARG68
|
3.8
|
8.3
|
0.3
|
HD2
|
A:ARG45
|
3.8
|
17.6
|
0.3
|
HH21
|
A:ARG45
|
3.8
|
16.1
|
0.7
|
OD1
|
A:ASP66
|
3.8
|
8.1
|
1.0
|
NH2
|
A:ARG68
|
3.8
|
8.8
|
0.7
|
C
|
A:GLY49
|
3.9
|
9.9
|
1.0
|
CZ
|
A:ARG68
|
4.0
|
6.7
|
0.3
|
NH2
|
A:ARG68
|
4.0
|
6.7
|
0.3
|
HG
|
A:SER60
|
4.0
|
8.8
|
1.0
|
NE
|
A:ARG45
|
4.0
|
10.8
|
0.7
|
CA
|
A:THR51
|
4.1
|
6.8
|
1.0
|
O
|
A:ARG68
|
4.1
|
11.7
|
0.3
|
HD2
|
A:ARG68
|
4.1
|
10.0
|
0.3
|
O
|
A:SER50
|
4.1
|
7.9
|
1.0
|
C
|
A:ARG68
|
4.1
|
11.1
|
0.7
|
HG2
|
A:ARG68
|
4.2
|
13.7
|
0.7
|
HD2
|
A:ARG68
|
4.2
|
14.8
|
0.7
|
NH2
|
A:ARG45
|
4.2
|
13.4
|
0.7
|
N
|
A:SER50
|
4.3
|
8.9
|
1.0
|
OH
|
A:TYR53
|
4.3
|
8.7
|
1.0
|
C
|
A:ARG68
|
4.3
|
11.1
|
0.3
|
CB
|
A:THR69
|
4.4
|
9.6
|
1.0
|
HE
|
A:ARG45
|
4.4
|
22.5
|
0.3
|
CZ
|
A:ARG45
|
4.4
|
11.7
|
0.7
|
HB2
|
A:ARG68
|
4.4
|
12.8
|
0.7
|
HD3
|
A:ARG45
|
4.5
|
17.6
|
0.3
|
CD
|
A:ARG45
|
4.5
|
14.7
|
0.3
|
CB
|
A:ARG68
|
4.5
|
10.7
|
0.7
|
HA
|
A:THR69
|
4.6
|
14.2
|
1.0
|
HA
|
A:THR51
|
4.6
|
8.2
|
1.0
|
HG23
|
A:THR69
|
4.6
|
11.4
|
1.0
|
HD3
|
A:ARG68
|
4.6
|
10.0
|
0.3
|
HD3
|
A:ARG45
|
4.6
|
11.5
|
0.7
|
NE
|
A:ARG45
|
4.6
|
18.8
|
0.3
|
N
|
A:THR69
|
4.6
|
10.8
|
1.0
|
HH22
|
A:ARG68
|
4.7
|
10.6
|
0.7
|
HE1
|
A:TYR53
|
4.7
|
8.6
|
1.0
|
CB
|
A:ARG68
|
4.7
|
9.9
|
0.3
|
CB
|
A:SER60
|
4.8
|
7.4
|
1.0
|
HB3
|
A:SER60
|
4.8
|
8.9
|
1.0
|
CA
|
A:THR69
|
4.8
|
11.8
|
1.0
|
CG2
|
A:THR51
|
4.8
|
8.1
|
1.0
|
HH22
|
A:ARG68
|
4.8
|
8.1
|
0.3
|
HH22
|
A:ARG45
|
4.8
|
16.1
|
0.7
|
HB2
|
A:SER60
|
4.9
|
8.9
|
1.0
|
H
|
A:ARG68
|
4.9
|
13.6
|
0.3
|
CD
|
A:ARG45
|
4.9
|
9.6
|
0.7
|
HG22
|
A:THR51
|
4.9
|
9.7
|
1.0
|
HB2
|
A:SER50
|
4.9
|
9.0
|
1.0
|
NH1
|
A:ARG68
|
4.9
|
13.7
|
0.7
|
CA
|
A:ARG68
|
4.9
|
10.9
|
0.7
|
H
|
A:ARG68
|
4.9
|
13.3
|
0.7
|
CB
|
A:SER50
|
4.9
|
7.5
|
1.0
|
CG2
|
A:THR69
|
4.9
|
9.5
|
1.0
|
CB
|
A:ASP66
|
4.9
|
8.1
|
1.0
|
HB2
|
A:ARG68
|
5.0
|
11.9
|
0.3
|
HB2
|
A:ASP66
|
5.0
|
9.7
|
1.0
|
HD2
|
A:ARG45
|
5.0
|
11.5
|
0.7
|
|
Chlorine binding site 6 out
of 13 in 4tws
Go back to
Chlorine Binding Sites List in 4tws
Chlorine binding site 6 out
of 13 in the Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl212
b:14.2
occ:0.63
|
H
|
A:LEU56
|
2.1
|
9.4
|
1.0
|
HG
|
A:SER91
|
2.7
|
10.8
|
1.0
|
HA3
|
A:GLY54
|
2.8
|
8.9
|
1.0
|
O
|
A:TYR53
|
2.8
|
7.8
|
1.0
|
OG
|
A:SER91
|
2.9
|
9.0
|
1.0
|
N
|
A:LEU56
|
3.0
|
7.8
|
1.0
|
HB2
|
A:LEU56
|
3.0
|
10.7
|
1.0
|
HD11
|
A:ILE58
|
3.1
|
13.7
|
1.0
|
H
|
A:ILE55
|
3.2
|
10.2
|
0.6
|
H
|
A:GLN57
|
3.2
|
8.4
|
1.0
|
HB3
|
A:SER91
|
3.2
|
10.2
|
1.0
|
HG13
|
A:ILE55
|
3.2
|
10.2
|
0.4
|
HG13
|
A:ILE58
|
3.2
|
11.5
|
1.0
|
H
|
A:ILE55
|
3.3
|
9.2
|
0.4
|
H
|
A:ILE58
|
3.3
|
9.2
|
1.0
|
N
|
A:ILE55
|
3.3
|
8.5
|
0.6
|
N
|
A:ILE55
|
3.3
|
7.6
|
0.4
|
C
|
A:GLY54
|
3.4
|
7.2
|
1.0
|
HB3
|
A:LEU83
|
3.4
|
11.9
|
1.0
|
CA
|
A:GLY54
|
3.5
|
7.4
|
1.0
|
N
|
A:GLN57
|
3.5
|
7.0
|
1.0
|
HD21
|
A:LEU83
|
3.6
|
15.7
|
1.0
|
CA
|
A:LEU56
|
3.6
|
8.1
|
1.0
|
CB
|
A:SER91
|
3.6
|
8.5
|
1.0
|
HG21
|
A:ILE55
|
3.6
|
14.7
|
0.6
|
HB
|
A:ILE58
|
3.7
|
10.8
|
1.0
|
C
|
A:LEU56
|
3.7
|
8.3
|
1.0
|
HG12
|
A:ILE55
|
3.7
|
10.2
|
0.4
|
CB
|
A:LEU56
|
3.7
|
8.9
|
1.0
|
CD1
|
A:ILE58
|
3.8
|
11.4
|
1.0
|
O
|
A:HOH518
|
3.8
|
13.0
|
1.0
|
CG1
|
A:ILE58
|
3.8
|
9.6
|
1.0
|
C
|
A:TYR53
|
3.8
|
7.7
|
1.0
|
CG1
|
A:ILE55
|
3.9
|
8.5
|
0.4
|
HD12
|
A:ILE58
|
4.0
|
13.7
|
1.0
|
C
|
A:ILE55
|
4.0
|
7.8
|
0.4
|
C
|
A:ILE55
|
4.0
|
8.5
|
0.6
|
N
|
A:ILE58
|
4.0
|
7.7
|
1.0
|
O
|
A:GLY54
|
4.0
|
7.5
|
1.0
|
HA
|
A:SER91
|
4.1
|
9.6
|
1.0
|
CA
|
A:ILE55
|
4.1
|
8.0
|
0.4
|
N
|
A:GLY54
|
4.2
|
7.5
|
1.0
|
CA
|
A:ILE55
|
4.2
|
9.6
|
0.6
|
HD13
|
A:LEU83
|
4.2
|
13.8
|
1.0
|
CB
|
A:ILE58
|
4.2
|
9.0
|
1.0
|
HA2
|
A:GLY54
|
4.3
|
8.9
|
1.0
|
HB2
|
A:SER91
|
4.3
|
10.2
|
1.0
|
O
|
A:LEU83
|
4.3
|
9.3
|
1.0
|
HB3
|
A:LEU56
|
4.3
|
10.7
|
1.0
|
CB
|
A:LEU83
|
4.4
|
9.9
|
1.0
|
CG2
|
A:ILE55
|
4.4
|
12.2
|
0.6
|
CA
|
A:SER91
|
4.5
|
8.0
|
1.0
|
CD2
|
A:LEU83
|
4.5
|
13.0
|
1.0
|
O
|
A:LEU56
|
4.5
|
9.0
|
1.0
|
HA
|
A:LEU56
|
4.5
|
9.8
|
1.0
|
CA
|
A:GLN57
|
4.5
|
7.0
|
1.0
|
HA
|
A:GLN57
|
4.5
|
8.4
|
1.0
|
HG23
|
A:ILE55
|
4.6
|
14.7
|
0.6
|
HD13
|
A:ILE58
|
4.6
|
13.7
|
1.0
|
HG
|
A:LEU56
|
4.7
|
11.3
|
1.0
|
CB
|
A:ILE55
|
4.7
|
8.4
|
0.4
|
HG12
|
A:ILE58
|
4.7
|
11.5
|
1.0
|
HD11
|
A:LEU56
|
4.8
|
11.1
|
1.0
|
C
|
A:GLN57
|
4.8
|
7.8
|
1.0
|
CA
|
A:ILE58
|
4.8
|
7.7
|
1.0
|
HD23
|
A:LEU83
|
4.8
|
15.7
|
1.0
|
CG
|
A:LEU56
|
4.8
|
9.4
|
1.0
|
CB
|
A:ILE55
|
4.8
|
12.3
|
0.6
|
CG
|
A:LEU83
|
4.9
|
11.4
|
1.0
|
HB2
|
A:LEU83
|
4.9
|
11.9
|
1.0
|
HD12
|
A:ILE55
|
4.9
|
11.2
|
0.4
|
HB
|
A:ILE55
|
4.9
|
14.7
|
0.6
|
HA
|
A:LEU83
|
5.0
|
10.9
|
1.0
|
HA
|
A:ILE55
|
5.0
|
11.5
|
0.6
|
CD1
|
A:LEU83
|
5.0
|
11.5
|
1.0
|
H
|
A:GLY54
|
5.0
|
9.1
|
1.0
|
|
Chlorine binding site 7 out
of 13 in 4tws
Go back to
Chlorine Binding Sites List in 4tws
Chlorine binding site 7 out
of 13 in the Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl213
b:12.3
occ:0.57
|
OG1
|
A:THR43
|
2.7
|
13.9
|
1.0
|
H
|
A:THR43
|
2.7
|
11.1
|
1.0
|
O
|
A:GLN41
|
2.7
|
10.7
|
1.0
|
HG23
|
A:THR43
|
2.9
|
12.2
|
1.0
|
HG1
|
A:THR43
|
2.9
|
16.7
|
1.0
|
N
|
A:THR43
|
3.2
|
9.3
|
1.0
|
HA
|
A:ALA42
|
3.4
|
9.5
|
1.0
|
CB
|
A:THR43
|
3.5
|
11.0
|
1.0
|
CG2
|
A:THR43
|
3.5
|
10.2
|
1.0
|
HG22
|
A:THR43
|
3.8
|
12.2
|
1.0
|
C
|
A:ALA42
|
3.8
|
8.4
|
1.0
|
C
|
A:GLN41
|
3.9
|
9.4
|
1.0
|
CA
|
A:THR43
|
3.9
|
10.7
|
1.0
|
CA
|
A:ALA42
|
4.0
|
7.9
|
1.0
|
O
|
A:THR43
|
4.3
|
12.4
|
1.0
|
HB
|
A:THR43
|
4.4
|
13.2
|
1.0
|
N
|
A:ALA42
|
4.4
|
7.5
|
1.0
|
HG21
|
A:THR43
|
4.4
|
12.2
|
1.0
|
HB3
|
A:GLN41
|
4.5
|
9.3
|
1.0
|
C
|
A:THR43
|
4.5
|
10.3
|
1.0
|
O
|
A:ALA42
|
4.7
|
7.0
|
1.0
|
HA
|
A:THR43
|
4.7
|
12.8
|
1.0
|
|
Chlorine binding site 8 out
of 13 in 4tws
Go back to
Chlorine Binding Sites List in 4tws
Chlorine binding site 8 out
of 13 in the Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl214
b:17.0
occ:0.72
|
HD22
|
A:ASN65
|
2.4
|
16.8
|
1.0
|
HB3
|
A:PRO79
|
2.9
|
12.3
|
1.0
|
HB3
|
A:ASN65
|
3.1
|
12.0
|
1.0
|
NA
|
A:NA224
|
3.1
|
21.7
|
1.0
|
HA
|
A:PRO79
|
3.2
|
11.4
|
1.0
|
ND2
|
A:ASN65
|
3.3
|
14.0
|
1.0
|
CB
|
A:PRO79
|
3.6
|
10.2
|
1.0
|
HD3
|
A:PRO79
|
3.7
|
13.5
|
1.0
|
CA
|
A:PRO79
|
3.7
|
9.5
|
1.0
|
HD21
|
A:ASN65
|
3.7
|
16.8
|
1.0
|
N
|
A:PRO79
|
3.9
|
9.6
|
1.0
|
CB
|
A:ASN65
|
4.0
|
10.0
|
1.0
|
CG
|
A:ASN65
|
4.1
|
10.8
|
1.0
|
CD
|
A:PRO79
|
4.2
|
11.2
|
1.0
|
CG
|
A:PRO79
|
4.3
|
11.3
|
1.0
|
O
|
A:ASN65
|
4.4
|
8.9
|
1.0
|
HG3
|
A:PRO79
|
4.4
|
13.6
|
1.0
|
HB2
|
A:PRO79
|
4.4
|
12.3
|
1.0
|
HB2
|
A:ASN65
|
4.4
|
12.0
|
1.0
|
C
|
A:ILE78
|
4.5
|
9.6
|
1.0
|
HD21
|
A:ASN74
|
4.5
|
14.4
|
1.0
|
O
|
A:ILE78
|
4.7
|
9.1
|
1.0
|
HD22
|
A:ASN74
|
4.9
|
14.4
|
1.0
|
H
|
A:ASN65
|
4.9
|
10.4
|
1.0
|
ND2
|
A:ASN74
|
5.0
|
12.0
|
1.0
|
C
|
A:ASN65
|
5.0
|
7.9
|
1.0
|
|
Chlorine binding site 9 out
of 13 in 4tws
Go back to
Chlorine Binding Sites List in 4tws
Chlorine binding site 9 out
of 13 in the Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl215
b:15.2
occ:0.63
|
H
|
A:SER24
|
2.1
|
9.0
|
1.0
|
O
|
A:HOH453
|
2.7
|
26.6
|
1.0
|
HA
|
A:TYR23
|
2.9
|
9.4
|
1.0
|
HB3
|
A:SER24
|
2.9
|
11.3
|
1.0
|
O
|
A:HOH433
|
3.0
|
20.2
|
1.0
|
N
|
A:SER24
|
3.0
|
7.5
|
1.0
|
O
|
A:GLY22
|
3.0
|
9.6
|
1.0
|
HD21
|
A:ASN27
|
3.1
|
9.3
|
1.0
|
HD22
|
A:ASN27
|
3.2
|
9.3
|
1.0
|
ND2
|
A:ASN27
|
3.4
|
7.8
|
1.0
|
OG
|
A:SER24
|
3.5
|
10.9
|
1.0
|
CB
|
A:SER24
|
3.5
|
9.4
|
1.0
|
HG
|
A:SER24
|
3.7
|
13.1
|
1.0
|
CA
|
A:TYR23
|
3.7
|
7.9
|
1.0
|
C
|
A:TYR23
|
3.8
|
7.0
|
1.0
|
CA
|
A:SER24
|
3.8
|
8.4
|
1.0
|
C
|
A:GLY22
|
4.0
|
9.8
|
1.0
|
O
|
A:HOH551
|
4.1
|
30.4
|
1.0
|
O
|
A:HOH350
|
4.2
|
14.4
|
1.0
|
HA
|
A:SER24
|
4.4
|
10.1
|
1.0
|
N
|
A:TYR23
|
4.4
|
7.9
|
1.0
|
HB2
|
A:SER24
|
4.4
|
11.3
|
1.0
|
CG
|
A:ASN27
|
4.7
|
7.0
|
1.0
|
HD1
|
A:TYR23
|
4.7
|
8.0
|
1.0
|
CB
|
A:TYR23
|
4.9
|
7.2
|
1.0
|
O
|
A:HOH403
|
4.9
|
43.8
|
1.0
|
HB3
|
A:TYR23
|
4.9
|
8.6
|
1.0
|
C
|
A:SER24
|
5.0
|
9.4
|
1.0
|
|
Chlorine binding site 10 out
of 13 in 4tws
Go back to
Chlorine Binding Sites List in 4tws
Chlorine binding site 10 out
of 13 in the Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl216
b:20.1
occ:0.76
|
H
|
A:GLU7
|
2.4
|
12.3
|
1.0
|
HA3
|
A:GLY4
|
2.7
|
12.8
|
1.0
|
O
|
A:HOH523
|
2.9
|
14.7
|
1.0
|
HB2
|
A:GLU7
|
2.9
|
13.8
|
1.0
|
H
|
A:CYS6
|
3.1
|
13.5
|
1.0
|
HB2
|
A:CYS6
|
3.1
|
14.0
|
1.0
|
N
|
A:GLU7
|
3.2
|
10.3
|
1.0
|
CA
|
A:GLY4
|
3.5
|
10.7
|
1.0
|
N
|
A:CYS6
|
3.6
|
11.3
|
1.0
|
O
|
A:HOH392
|
3.6
|
33.3
|
1.0
|
C
|
A:GLY4
|
3.6
|
10.0
|
1.0
|
CB
|
A:GLU7
|
3.6
|
11.5
|
1.0
|
HB3
|
A:GLU7
|
3.7
|
13.8
|
1.0
|
N
|
A:ARG5
|
3.9
|
10.7
|
1.0
|
H
|
A:ARG5
|
3.9
|
12.9
|
1.0
|
CB
|
A:CYS6
|
4.0
|
11.6
|
1.0
|
CA
|
A:GLU7
|
4.0
|
10.1
|
1.0
|
CA
|
A:CYS6
|
4.0
|
10.7
|
1.0
|
C
|
A:CYS6
|
4.1
|
10.0
|
1.0
|
O
|
A:GLY4
|
4.1
|
9.4
|
1.0
|
HA2
|
A:GLY4
|
4.1
|
12.8
|
1.0
|
H
|
A:GLY4
|
4.2
|
14.7
|
1.0
|
O
|
A:HOH434
|
4.4
|
34.3
|
1.0
|
HA
|
A:GLU7
|
4.4
|
12.2
|
1.0
|
N
|
A:GLY4
|
4.4
|
12.2
|
1.0
|
C
|
A:ARG5
|
4.4
|
10.8
|
1.0
|
HB3
|
A:CYS6
|
4.6
|
14.0
|
1.0
|
CA
|
A:ARG5
|
4.7
|
11.0
|
1.0
|
OE1
|
A:GLU7
|
4.8
|
15.0
|
1.0
|
HB3
|
A:ARG5
|
4.9
|
16.2
|
1.0
|
H
|
A:LEU8
|
4.9
|
11.1
|
1.0
|
CG
|
A:GLU7
|
4.9
|
12.3
|
1.0
|
|
Reference:
J.M.Holton,
S.Classen,
K.A.Frankel,
J.A.Tainer.
The R-Factor Gap in Macromolecular Crystallography: An Untapped Potential For Insights on Accurate Structures. Febs J. V. 281 4046 2014.
ISSN: ISSN 1742-464X
PubMed: 25040949
DOI: 10.1111/FEBS.12922
Page generated: Fri Jul 26 01:56:43 2024
|