Chlorine in PDB 4u0y: Crystal Structure of the Dna-Binding Domains of Yvoa in Complex with Palindromic Operator Dna

The structure of Crystal Structure of the Dna-Binding Domains of Yvoa in Complex with Palindromic Operator Dna, PDB code: 4u0y was solved by S.B.Fillenberg, Y.A.Muller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.52 / 1.91
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	48.554, 48.554, 153.941, 90.00, 90.00, 120.00
R / Rfree (%)	17.8 / 22.9

The binding sites of Chlorine atom in the Crystal Structure of the Dna-Binding Domains of Yvoa in Complex with Palindromic Operator Dna (pdb code 4u0y). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Dna-Binding Domains of Yvoa in Complex with Palindromic Operator Dna, PDB code: 4u0y:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of the Dna-Binding Domains of Yvoa in Complex with Palindromic Operator Dna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Dna-Binding Domains of Yvoa in Complex with Palindromic Operator Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl101 b:22.6 occ:1.00 O E:HOH117 3.0 21.9 1.0 O E:HOH116 3.1 20.7 1.0 NH1 A:ARG48 3.2 23.6 1.0 N4 E:DC11 3.3 19.0 1.0 NH2 B:ARG38 3.3 20.1 1.0 NE B:ARG38 3.4 21.5 1.0 NH2 A:ARG48 3.6 22.1 1.0 CZ B:ARG38 3.8 20.4 1.0 CZ A:ARG48 3.8 25.3 1.0 NH1 A:ARG38 3.8 20.4 0.6 O E:HOH120 3.9 24.3 1.0 O A:HOH122 3.9 34.2 1.0 CD A:ARG38 4.0 22.1 0.6 N7 E:DA10 4.1 21.3 1.0 C4 E:DC11 4.3 20.7 1.0 C5 E:DC11 4.4 19.2 1.0 CD A:ARG38 4.5 22.8 0.5 CD B:ARG38 4.6 22.8 1.0 CB A:ARG38 4.7 23.2 0.6 CB A:ARG38 4.7 23.2 0.5 CZ A:ARG38 4.7 25.0 0.6 N6 E:DA10 4.7 18.0 1.0 O E:HOH128 4.8 27.1 1.0 NE A:ARG38 4.8 22.0 0.6 O E:HOH114 4.8 18.1 1.0 CG A:ARG38 4.8 24.0 0.6 C5 E:DA10 4.9 21.2 1.0 C8 E:DA10 4.9 19.2 1.0 O A:HOH112 4.9 21.9 1.0 CG A:ARG38 5.0 23.3 0.5 NH2 B:ARG48 5.0 16.0 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of the Dna-Binding Domains of Yvoa in Complex with Palindromic Operator Dna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Dna-Binding Domains of Yvoa in Complex with Palindromic Operator Dna within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl101 b:23.3 occ:1.00 O F:HOH113 3.0 21.9 1.0 O F:HOH116 3.1 23.1 1.0 NH1 C:ARG48 3.2 22.2 1.0 NH2 D:ARG38 3.3 19.6 1.0 N4 F:DC11 3.3 19.9 1.0 NE D:ARG38 3.4 20.9 1.0 NH2 C:ARG48 3.5 21.0 1.0 CZ C:ARG48 3.8 25.4 1.0 CZ D:ARG38 3.8 21.7 1.0 O F:HOH121 3.9 27.1 1.0 O F:HOH118 3.9 30.0 1.0 NH1 C:ARG38 3.9 21.1 0.5 CD C:ARG38 4.0 22.4 0.5 N7 F:DA10 4.1 20.7 1.0 C4 F:DC11 4.3 20.6 1.0 C5 F:DC11 4.4 22.0 1.0 CD C:ARG38 4.5 20.9 0.5 CB C:ARG38 4.6 23.5 0.5 CD D:ARG38 4.7 22.7 1.0 CB C:ARG38 4.7 23.4 0.5 O F:HOH109 4.7 18.4 1.0 CZ C:ARG38 4.7 24.8 0.5 NE C:ARG38 4.7 25.6 0.5 O F:HOH127 4.8 25.4 1.0 CG C:ARG38 4.8 24.0 0.5 C8 F:DA10 4.8 18.9 1.0 N6 F:DA10 4.8 18.4 1.0 C5 F:DA10 4.9 17.7 1.0 CG C:ARG38 5.0 24.8 0.5

S.B.Fillenberg, F.C.Grau, G.Seidel, Y.A.Muller. Structural Insight Into Operator Dre-Sites Recognition and Effector Binding in the Gntr/Hutc Transcription Regulator Nagr. Nucleic Acids Res. V. 43 1283 2015.
ISSN: ESSN 1362-4962
PubMed: 25564531
DOI: 10.1093/NAR/GKU1374