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Chlorine in PDB 4u1a: Crystal Structure of Human Peroxisomal DELTA3,DELTA2, Enoyl-Coa Isomerase Helix-10 Deletion Mutant (Isob-ECI2)

Enzymatic activity of Crystal Structure of Human Peroxisomal DELTA3,DELTA2, Enoyl-Coa Isomerase Helix-10 Deletion Mutant (Isob-ECI2)

All present enzymatic activity of Crystal Structure of Human Peroxisomal DELTA3,DELTA2, Enoyl-Coa Isomerase Helix-10 Deletion Mutant (Isob-ECI2):
5.3.3.8;

Protein crystallography data

The structure of Crystal Structure of Human Peroxisomal DELTA3,DELTA2, Enoyl-Coa Isomerase Helix-10 Deletion Mutant (Isob-ECI2), PDB code: 4u1a was solved by G.U.Onwukwe, M.K.Koski, R.K.Wierenga, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.85 / 2.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 74.440, 95.340, 129.970, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 23.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Peroxisomal DELTA3,DELTA2, Enoyl-Coa Isomerase Helix-10 Deletion Mutant (Isob-ECI2) (pdb code 4u1a). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Human Peroxisomal DELTA3,DELTA2, Enoyl-Coa Isomerase Helix-10 Deletion Mutant (Isob-ECI2), PDB code: 4u1a:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4u1a

Go back to Chlorine Binding Sites List in 4u1a
Chlorine binding site 1 out of 3 in the Crystal Structure of Human Peroxisomal DELTA3,DELTA2, Enoyl-Coa Isomerase Helix-10 Deletion Mutant (Isob-ECI2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Peroxisomal DELTA3,DELTA2, Enoyl-Coa Isomerase Helix-10 Deletion Mutant (Isob-ECI2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:85.2
occ:1.00
 O A:ASN185 3.7 72.4 1.0
CB A:ASN185 3.9 65.2 1.0
CG A:ASN185 4.1 65.2 1.0
CZ A:TYR134 4.1 48.8 1.0
OH A:TYR134 4.2 47.6 1.0
ND2 A:ASN165 4.2 63.5 1.0
CA A:ASN185 4.2 60.8 1.0
CB A:LEU189 4.2 35.7 1.0
CE2 A:TYR134 4.3 51.2 1.0
CD2 A:LEU188 4.3 48.3 1.0
C A:ASN185 4.3 60.2 1.0
OD1 A:ASN185 4.3 66.2 1.0
ND2 A:ASN185 4.5 63.9 1.0
CE1 A:TYR134 4.5 50.8 1.0
N A:LEU189 4.6 39.9 1.0
CH2 A:TRP340 4.7 64.3 1.0
OD1 A:ASN165 4.7 65.5 1.0
CA A:LEU189 4.7 37.7 1.0
CD1 A:LEU189 4.8 36.4 1.0
CG A:LEU188 4.8 47.0 1.0
CB A:LEU188 4.8 44.1 1.0
CD2 A:TYR134 4.8 50.1 1.0
CG A:ASN165 4.9 62.0 1.0

Chlorine binding site 2 out of 3 in 4u1a

Go back to Chlorine Binding Sites List in 4u1a
Chlorine binding site 2 out of 3 in the Crystal Structure of Human Peroxisomal DELTA3,DELTA2, Enoyl-Coa Isomerase Helix-10 Deletion Mutant (Isob-ECI2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Peroxisomal DELTA3,DELTA2, Enoyl-Coa Isomerase Helix-10 Deletion Mutant (Isob-ECI2) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl401

b:88.7
occ:1.00
 O B:ASN185 3.8 59.5 1.0
CD2 B:LEU188 3.8 48.4 1.0
CG B:ASN185 3.9 70.7 1.0
CB B:ASN185 3.9 66.2 1.0
OD1 B:ASN185 4.1 71.3 1.0
CZ B:TYR134 4.1 68.1 1.0
CA B:ASN185 4.2 59.4 1.0
CE2 B:TYR134 4.2 68.7 1.0
OH B:TYR134 4.3 60.0 1.0
C B:ASN185 4.3 56.6 1.0
ND2 B:ASN185 4.4 79.7 1.0
ND2 B:ASN165 4.4 80.3 1.0
CG B:LEU188 4.5 48.0 1.0
CE1 B:TYR134 4.5 67.8 1.0
N B:LEU189 4.6 42.3 1.0
CB B:LEU189 4.6 43.2 1.0
CB B:LEU188 4.6 43.8 1.0
CD2 B:TYR134 4.7 62.5 1.0
OD1 B:ASN165 4.8 69.3 1.0
CA B:LEU189 4.8 42.9 1.0
CD1 B:TYR134 4.9 63.1 1.0

Chlorine binding site 3 out of 3 in 4u1a

Go back to Chlorine Binding Sites List in 4u1a
Chlorine binding site 3 out of 3 in the Crystal Structure of Human Peroxisomal DELTA3,DELTA2, Enoyl-Coa Isomerase Helix-10 Deletion Mutant (Isob-ECI2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human Peroxisomal DELTA3,DELTA2, Enoyl-Coa Isomerase Helix-10 Deletion Mutant (Isob-ECI2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl401

b:74.3
occ:1.00
 CG C:ASN185 3.9 50.1 1.0
ND2 C:ASN165 3.9 62.2 1.0
OH C:TYR134 4.0 41.4 1.0
CZ C:TYR134 4.0 41.4 1.0
CB C:ASN185 4.0 41.0 1.0
OD1 C:ASN165 4.1 64.2 1.0
OD1 C:ASN185 4.1 52.6 1.0
ND2 C:ASN185 4.1 55.1 1.0
CE2 C:TYR134 4.2 42.4 1.0
O C:ASN185 4.3 41.9 1.0
CG C:ASN165 4.4 57.7 1.0
CA C:ASN185 4.5 38.9 1.0
CE1 C:TYR134 4.6 41.9 1.0
CD2 C:LEU188 4.6 33.3 1.0
ND2 C:ASN169 4.8 77.0 1.0
C C:ASN185 4.8 40.5 1.0
CD2 C:TYR134 4.8 43.8 1.0
CH2 C:TRP340 4.9 50.6 1.0
CB C:LEU189 5.0 31.9 1.0

Reference:

G.U.Onwukwe, P.Kursula, M.K.Koski, W.Schmitz, R.K.Wierenga. Human Delta 3, DELTA2-Enoyl-Coa Isomerase, Type-2: A Structural Enzymology Study on the Catalytic Role of Its Acbp-Domain and Helix-10. Febs J. 2014.
ISSN: ISSN 1742-464X
DOI: 10.1111/FEBS.13179
Page generated: Fri Jul 26 02:03:18 2024

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