Chlorine in PDB 4uyg: C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A)
Protein crystallography data
The structure of C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A), PDB code: 4uyg
was solved by
C.Chung,
P.Bamborough,
R.Gosmini,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
62.02 /
2.50
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
58.370,
88.332,
87.264,
90.00,
94.74,
90.00
|
R / Rfree (%)
|
19.019 /
23.386
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A)
(pdb code 4uyg). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A), PDB code: 4uyg:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 4uyg
Go back to
Chlorine Binding Sites List in 4uyg
Chlorine binding site 1 out
of 6 in the C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1456
b:35.0
occ:1.00
|
CL1
|
A:73B1456
|
0.0
|
35.0
|
1.0
|
C8
|
A:73B1456
|
1.7
|
31.1
|
1.0
|
C7
|
A:73B1456
|
2.7
|
28.0
|
1.0
|
C9
|
A:73B1456
|
2.7
|
31.0
|
1.0
|
CB
|
A:ASP434
|
3.9
|
42.0
|
1.0
|
CZ2
|
A:TRP370
|
3.9
|
27.3
|
1.0
|
C6
|
A:73B1456
|
4.0
|
31.5
|
1.0
|
C10
|
A:73B1456
|
4.0
|
33.5
|
1.0
|
SD
|
A:MET438
|
4.0
|
33.6
|
1.0
|
OD2
|
A:ASP434
|
4.2
|
48.4
|
1.0
|
CH2
|
A:TRP370
|
4.4
|
27.4
|
1.0
|
CG
|
A:ASP434
|
4.5
|
43.8
|
1.0
|
C5
|
A:73B1456
|
4.5
|
31.2
|
1.0
|
CE
|
A:MET438
|
4.7
|
31.5
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 4uyg
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Chlorine Binding Sites List in 4uyg
Chlorine binding site 2 out
of 6 in the C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1456
b:30.2
occ:1.00
|
CL1
|
B:73B1456
|
0.0
|
30.2
|
1.0
|
C8
|
B:73B1456
|
1.8
|
30.0
|
1.0
|
C7
|
B:73B1456
|
2.7
|
24.4
|
1.0
|
C9
|
B:73B1456
|
2.7
|
28.1
|
1.0
|
CZ2
|
B:TRP370
|
3.9
|
23.8
|
1.0
|
CB
|
B:ASP434
|
4.0
|
29.8
|
1.0
|
SD
|
B:MET438
|
4.0
|
31.8
|
1.0
|
C6
|
B:73B1456
|
4.0
|
24.7
|
1.0
|
C10
|
B:73B1456
|
4.0
|
27.1
|
1.0
|
O
|
B:HOH2042
|
4.2
|
38.6
|
1.0
|
OD2
|
B:ASP434
|
4.3
|
33.2
|
1.0
|
CH2
|
B:TRP370
|
4.4
|
23.9
|
1.0
|
C5
|
B:73B1456
|
4.6
|
25.1
|
1.0
|
CG
|
B:ASP434
|
4.6
|
31.5
|
1.0
|
CE
|
B:MET438
|
4.8
|
28.5
|
1.0
|
CE2
|
B:TRP370
|
5.0
|
23.6
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 4uyg
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Chlorine Binding Sites List in 4uyg
Chlorine binding site 3 out
of 6 in the C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1456
b:35.6
occ:1.00
|
CL1
|
C:73B1456
|
0.0
|
35.6
|
1.0
|
C8
|
C:73B1456
|
1.8
|
31.5
|
1.0
|
C7
|
C:73B1456
|
2.7
|
32.4
|
1.0
|
C9
|
C:73B1456
|
2.7
|
29.5
|
1.0
|
CZ2
|
C:TRP370
|
3.9
|
28.7
|
1.0
|
SD
|
C:MET438
|
4.0
|
32.4
|
1.0
|
C6
|
C:73B1456
|
4.0
|
33.3
|
1.0
|
CB
|
C:ASP434
|
4.0
|
46.2
|
1.0
|
C10
|
C:73B1456
|
4.0
|
29.1
|
1.0
|
OD2
|
C:ASP434
|
4.4
|
61.4
|
1.0
|
CH2
|
C:TRP370
|
4.4
|
29.1
|
1.0
|
C5
|
C:73B1456
|
4.5
|
30.2
|
1.0
|
CG
|
C:ASP434
|
4.6
|
52.7
|
1.0
|
CE
|
C:MET438
|
4.6
|
29.1
|
1.0
|
CE2
|
C:TRP370
|
5.0
|
28.2
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 4uyg
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Chlorine Binding Sites List in 4uyg
Chlorine binding site 4 out
of 6 in the C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl1456
b:51.9
occ:1.00
|
CL1
|
D:73B1456
|
0.0
|
51.9
|
1.0
|
C8
|
D:73B1456
|
1.8
|
45.0
|
1.0
|
C7
|
D:73B1456
|
2.7
|
41.5
|
1.0
|
C9
|
D:73B1456
|
2.7
|
41.6
|
1.0
|
CB
|
D:ASP434
|
3.8
|
53.5
|
1.0
|
OD2
|
D:ASP434
|
3.9
|
60.5
|
1.0
|
C6
|
D:73B1456
|
4.0
|
40.3
|
1.0
|
C10
|
D:73B1456
|
4.0
|
42.2
|
1.0
|
CZ2
|
D:TRP370
|
4.0
|
35.7
|
1.0
|
CG
|
D:ASP434
|
4.2
|
57.2
|
1.0
|
SD
|
D:MET438
|
4.2
|
39.5
|
1.0
|
CH2
|
D:TRP370
|
4.5
|
35.5
|
1.0
|
C5
|
D:73B1456
|
4.6
|
38.7
|
1.0
|
CE
|
D:MET438
|
4.8
|
37.8
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 4uyg
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Chlorine Binding Sites List in 4uyg
Chlorine binding site 5 out
of 6 in the C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl1456
b:47.2
occ:1.00
|
CL1
|
E:73B1456
|
0.0
|
47.2
|
1.0
|
C8
|
E:73B1456
|
1.7
|
48.8
|
1.0
|
C7
|
E:73B1456
|
2.7
|
48.0
|
1.0
|
C9
|
E:73B1456
|
2.7
|
46.4
|
1.0
|
CB
|
E:ASP434
|
3.9
|
65.4
|
1.0
|
OD2
|
E:ASP434
|
3.9
|
67.6
|
1.0
|
C6
|
E:73B1456
|
4.0
|
47.0
|
1.0
|
CZ2
|
E:TRP370
|
4.0
|
56.2
|
1.0
|
C10
|
E:73B1456
|
4.0
|
47.0
|
1.0
|
SD
|
E:MET438
|
4.1
|
57.3
|
1.0
|
CG
|
E:ASP434
|
4.4
|
67.2
|
1.0
|
CE
|
E:MET438
|
4.4
|
55.5
|
1.0
|
C5
|
E:73B1456
|
4.5
|
47.8
|
1.0
|
CH2
|
E:TRP370
|
4.5
|
56.3
|
1.0
|
O
|
E:HOH2008
|
4.8
|
38.3
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 4uyg
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Chlorine Binding Sites List in 4uyg
Chlorine binding site 6 out
of 6 in the C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A)
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of C-Terminal Bromodomain of Human BRD2 with I-BET726 (GSK1324726A) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl1456
b:51.8
occ:1.00
|
CL1
|
F:73B1456
|
0.0
|
51.8
|
1.0
|
C8
|
F:73B1456
|
1.8
|
56.9
|
1.0
|
C7
|
F:73B1456
|
2.7
|
60.0
|
1.0
|
C9
|
F:73B1456
|
2.7
|
59.3
|
1.0
|
CZ2
|
F:TRP370
|
3.7
|
50.9
|
1.0
|
CB
|
F:ASP434
|
4.0
|
71.2
|
1.0
|
C6
|
F:73B1456
|
4.0
|
58.6
|
1.0
|
C10
|
F:73B1456
|
4.0
|
58.7
|
1.0
|
CH2
|
F:TRP370
|
4.3
|
51.3
|
1.0
|
SD
|
F:MET438
|
4.3
|
59.5
|
1.0
|
OD2
|
F:ASP434
|
4.4
|
78.8
|
1.0
|
C5
|
F:73B1456
|
4.5
|
60.0
|
1.0
|
CG
|
F:ASP434
|
4.6
|
78.7
|
1.0
|
CE2
|
F:TRP370
|
4.8
|
49.0
|
1.0
|
CE
|
F:MET438
|
5.0
|
56.6
|
1.0
|
|
Reference:
R.Gosmini,
V.L.Nguyen,
J.Toum,
C.Simon,
J.M.Brusq,
G.Krysa,
O.Mirguet,
A.M.Riou-Eymard,
E.V.Boursier,
L.Trottet,
P.Bamborough,
H.Clark,
C.W.Chung,
L.Cutler,
E.H.Demont,
R.Kaur,
A.J.Lewis,
M.B.Schilling,
P.E.Soden,
S.Taylor,
A.L.Walker,
M.D.Walker,
R.K.Prinjha,
E.Nicodeme.
The Discovery of I-BET726 (GSK1324726A), A Potent Tetrahydroquinoline APOA1 Up-Regulator and Selective Bet Bromodomain Inhibitor. J.Med.Chem. V. 57 8111 2014.
ISSN: ISSN 0022-2623
PubMed: 25249180
DOI: 10.1021/JM5010539
Page generated: Fri Jul 26 02:36:39 2024
|