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Chlorine in PDB 4wm1: High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa

Enzymatic activity of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa

All present enzymatic activity of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa:
3.2.1.17;

Protein crystallography data

The structure of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa, PDB code: 4wm1 was solved by H.Yamada, T.Nagae, N.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.34 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.287, 77.287, 37.938, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 20.8

Other elements in 4wm1:

The structure of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa (pdb code 4wm1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa, PDB code: 4wm1:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 4wm1

Go back to Chlorine Binding Sites List in 4wm1
Chlorine binding site 1 out of 6 in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:21.5
occ:1.00
 OH A:TYR23 2.9 11.4 1.0
O A:HOH327 3.1 34.1 1.0
O A:HOH337 3.4 19.5 1.0
CE2 A:TYR23 3.7 10.2 1.0
CZ A:TYR23 3.7 10.5 1.0
CA A:GLY104 4.1 11.6 1.0
O A:ARG21 4.6 15.2 1.0
O A:HOH308 4.7 23.9 1.0
N A:GLY104 4.7 12.6 1.0
CE1 A:TYR23 4.9 10.8 1.0
CD2 A:TYR23 4.9 10.4 1.0

Chlorine binding site 2 out of 6 in 4wm1

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Chlorine binding site 2 out of 6 in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:29.1
occ:1.00
 OG A:SER24 2.9 19.4 1.0
N A:GLY26 3.1 11.2 1.0
CB A:SER24 3.4 16.3 1.0
CA A:GLY26 3.5 10.7 1.0
CA A:GLN121 3.6 23.6 1.0
CD1 A:ILE124 3.9 29.8 1.0
N A:GLN121 4.0 20.2 1.0
CB A:GLN121 4.1 28.8 1.0
CG1 A:ILE124 4.1 26.9 1.0
N A:LEU25 4.1 13.3 1.0
C A:SER24 4.2 14.8 1.0
O A:VAL120 4.2 17.4 1.0
C A:LEU25 4.2 10.3 1.0
C A:VAL120 4.3 18.4 1.0
CG A:GLN121 4.4 37.7 1.0
CA A:SER24 4.4 14.1 1.0
CD A:GLN121 4.4 50.1 1.0
CG2 A:VAL120 4.4 19.7 1.0
C A:GLY26 4.6 10.1 1.0
O A:SER24 4.6 13.1 1.0
CA A:LEU25 4.6 10.9 1.0
N A:ASN27 4.7 9.3 1.0
OE1 A:GLN121 4.7 61.7 1.0
NE2 A:GLN121 4.7 53.8 1.0
C A:GLN121 4.8 18.7 1.0
CB A:LEU25 5.0 12.6 1.0

Chlorine binding site 3 out of 6 in 4wm1

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Chlorine binding site 3 out of 6 in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:32.7
occ:1.00
 O A:HOH367 3.1 39.8 1.0
O A:HOH418 3.2 42.5 1.0
N A:ILE88 3.3 13.8 1.0
O A:HOH323 3.5 44.1 1.0
O A:HOH394 3.6 32.1 1.0
CG1 A:ILE88 3.6 14.6 1.0
NE2 A:HIS15 3.6 23.9 1.0
CA A:ASP87 3.8 17.5 1.0
NH2 A:ARG14 4.0 35.6 1.0
OD1 A:ASP87 4.0 23.3 1.0
C A:ASP87 4.1 15.4 1.0
CB A:ALA11 4.2 16.3 1.0
O A:SER86 4.2 19.3 1.0
CD2 A:HIS15 4.3 22.6 1.0
CA A:ILE88 4.3 12.8 1.0
CZ A:PHE3 4.3 18.3 1.0
CB A:ILE88 4.3 13.9 1.0
CG A:ASP87 4.5 26.3 1.0
CG2 A:ILE88 4.5 17.9 1.0
CD1 A:ILE88 4.7 16.8 1.0
CB A:ASP87 4.7 19.1 1.0
CE1 A:HIS15 4.8 25.2 1.0
N A:ASP87 4.8 16.3 1.0
CE2 A:PHE3 4.9 14.9 1.0
N A:THR89 4.9 15.7 1.0
C A:SER86 4.9 17.5 1.0
C A:ILE88 4.9 15.1 1.0

Chlorine binding site 4 out of 6 in 4wm1

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Chlorine binding site 4 out of 6 in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:45.2
occ:1.00
 CE2 A:PHE38 3.7 14.0 1.0
O A:HOH348 4.0 38.9 1.0
CZ3 A:TRP123 4.0 22.0 1.0
NZ A:LYS33 4.0 33.1 1.0
CB A:ARG5 4.1 15.3 1.0
CD A:ARG5 4.2 17.7 1.0
CD A:LYS33 4.3 21.2 1.0
CZ A:PHE38 4.3 11.9 1.0
CE A:LYS33 4.3 29.3 1.0
CG A:ARG5 4.6 15.7 1.0
NE A:ARG5 4.6 20.6 1.0
CD2 A:PHE38 4.7 14.4 1.0
CH2 A:TRP123 4.8 21.2 1.0
CE3 A:TRP123 4.8 17.2 1.0

Chlorine binding site 5 out of 6 in 4wm1

Go back to Chlorine Binding Sites List in 4wm1
Chlorine binding site 5 out of 6 in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:36.0
occ:1.00
 O A:HOH385 3.1 24.4 1.0
N A:GLU7 3.1 13.9 1.0
CB A:GLU7 3.5 16.8 1.0
N A:CYS6 3.6 16.8 1.0
CA A:GLY4 3.6 16.8 1.0
C A:GLY4 3.7 14.4 1.0
CA A:GLU7 3.9 14.6 1.0
CB A:CYS6 3.9 17.5 1.0
C A:CYS6 3.9 15.4 1.0
CA A:CYS6 3.9 16.4 1.0
N A:ARG5 3.9 16.6 1.0
O A:HOH435 4.0 43.8 1.0
O A:GLY4 4.1 15.3 1.0
N A:GLY4 4.4 16.9 1.0
C A:ARG5 4.4 15.6 1.0
CG A:GLU7 4.8 18.0 1.0
CA A:ARG5 4.8 15.3 1.0
OE1 A:GLU7 4.8 21.4 1.0

Chlorine binding site 6 out of 6 in 4wm1

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Chlorine binding site 6 out of 6 in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:25.9
occ:1.00
 OD2 A:ASP66 2.7 10.6 1.0
OG1 A:THR51 2.7 10.1 1.0
O A:GLY49 2.8 18.7 1.0
NE A:ARG68 3.0 18.9 1.0
OG1 A:THR69 3.1 14.3 1.0
N A:THR51 3.4 10.2 1.0
C A:SER50 3.5 11.3 1.0
CG A:ARG68 3.5 15.5 1.0
CB A:THR51 3.6 9.8 1.0
NH2 A:ARG45 3.6 16.8 0.5
CG A:ASP66 3.6 10.3 1.0
CA A:SER50 3.6 12.3 1.0
CD A:ARG68 3.8 17.8 1.0
OG A:SER60 3.8 11.0 1.0
OD1 A:ASP66 3.8 11.5 1.0
C A:GLY49 3.8 18.1 1.0
CZ A:ARG68 3.9 18.2 1.0
CD A:ARG45 3.9 19.4 0.5
NH2 A:ARG68 3.9 18.7 1.0
O A:SER50 4.0 11.6 1.0
O A:ARG68 4.1 19.7 1.0
CA A:THR51 4.1 9.3 1.0
CZ A:ARG45 4.2 21.5 0.5
N A:SER50 4.2 14.3 1.0
OH A:TYR53 4.3 11.6 1.0
NE A:ARG45 4.3 24.2 0.5
C A:ARG68 4.3 15.5 1.0
CB A:THR69 4.4 15.2 1.0
CB A:ARG68 4.6 15.8 1.0
NE A:ARG45 4.6 28.5 0.5
CD A:ARG45 4.7 19.5 0.5
N A:THR69 4.7 14.8 1.0
CB A:SER60 4.8 12.2 1.0
CG2 A:THR51 4.8 10.2 1.0
CA A:THR69 4.8 14.1 1.0
CB A:SER50 4.9 11.8 1.0
CG2 A:THR69 4.9 15.1 1.0
CB A:ASP66 5.0 10.0 1.0
O A:HOH431 5.0 42.5 1.0

Reference:

H.Yamada, T.Nagae, N.Watanabe. High Pressure Protein Crystallography of Hen Egg White Lysozyme Acta Crystallogr.,Sect.D V. 71 2015.
ISSN: ESSN 1399-0047
DOI: 10.1107/S1399004715000292
Page generated: Fri Jul 26 02:57:33 2024

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