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Chlorine in PDB 4wva: Crystal Structure of GH63 Mannosylglycerate Hydrolase From Thermus Thermophilus HB8 in Complex with Tris

Protein crystallography data

The structure of Crystal Structure of GH63 Mannosylglycerate Hydrolase From Thermus Thermophilus HB8 in Complex with Tris, PDB code: 4wva was solved by T.Miyazaki, M.Ichikawa, A.Nishikawa, T.Tonozuka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.00 / 1.67
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 92.010, 92.010, 267.235, 90.00, 90.00, 120.00
R / Rfree (%) 14.6 / 17.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of GH63 Mannosylglycerate Hydrolase From Thermus Thermophilus HB8 in Complex with Tris (pdb code 4wva). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of GH63 Mannosylglycerate Hydrolase From Thermus Thermophilus HB8 in Complex with Tris, PDB code: 4wva:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 4wva

Go back to Chlorine Binding Sites List in 4wva
Chlorine binding site 1 out of 2 in the Crystal Structure of GH63 Mannosylglycerate Hydrolase From Thermus Thermophilus HB8 in Complex with Tris


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of GH63 Mannosylglycerate Hydrolase From Thermus Thermophilus HB8 in Complex with Tris within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl500

b:13.9
occ:0.33
O A:HOH735 2.8 13.3 0.3
N A:GLN313 3.3 14.6 1.0
CB A:HIS312 3.6 15.0 1.0
CA A:HIS312 3.8 14.2 1.0
CB A:GLN313 3.8 18.7 1.0
C A:HIS312 4.0 14.1 1.0
CA A:GLN313 4.2 16.8 1.0
CG A:HIS312 4.9 16.2 1.0

Chlorine binding site 2 out of 2 in 4wva

Go back to Chlorine Binding Sites List in 4wva
Chlorine binding site 2 out of 2 in the Crystal Structure of GH63 Mannosylglycerate Hydrolase From Thermus Thermophilus HB8 in Complex with Tris


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of GH63 Mannosylglycerate Hydrolase From Thermus Thermophilus HB8 in Complex with Tris within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl500

b:12.7
occ:0.33
O B:HOH687 2.7 12.6 0.3
N B:GLN313 3.2 14.7 1.0
CB B:HIS312 3.6 15.0 1.0
CB B:GLN313 3.7 18.2 1.0
CA B:HIS312 3.8 14.3 1.0
C B:HIS312 4.0 14.0 1.0
CA B:GLN313 4.1 16.4 1.0
CG B:HIS312 4.9 16.8 1.0

Reference:

T.Miyazaki, M.Ichikawa, H.Iino, A.Nishikawa, T.Tonozuka. Crystal Structure and Substrate-Binding Mode of GH63 Mannosylglycerate Hydrolase From Thermus Thermophilus HB8. J.Struct.Biol. 2015.
ISSN: ESSN 1095-8657
PubMed: 25712767
DOI: 10.1016/J.JSB.2015.02.006
Page generated: Sat Dec 12 11:19:03 2020

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