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Chlorine in PDB 4wyt: Crystal Structure of Scribble PDZ34 Tandem at 2.6 Angstroms

Protein crystallography data

The structure of Crystal Structure of Scribble PDZ34 Tandem at 2.6 Angstroms, PDB code: 4wyt was solved by J.Q.Ren, W.Feng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.66 / 2.60
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 69.140, 70.850, 92.750, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 28.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Scribble PDZ34 Tandem at 2.6 Angstroms (pdb code 4wyt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Scribble PDZ34 Tandem at 2.6 Angstroms, PDB code: 4wyt:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 4wyt

Go back to Chlorine Binding Sites List in 4wyt
Chlorine binding site 1 out of 3 in the Crystal Structure of Scribble PDZ34 Tandem at 2.6 Angstroms


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Scribble PDZ34 Tandem at 2.6 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:32.3
occ:1.00
N A:GLY122 3.2 26.0 1.0
CA A:GLY122 3.7 26.5 1.0
N A:ILE123 3.8 24.6 1.0
O A:ILE123 4.0 23.3 1.0
N A:LEU121 4.0 36.3 1.0
CB A:ARG120 4.1 55.1 1.0
CG A:ARG120 4.2 61.3 1.0
C A:LEU121 4.2 32.4 1.0
O A:HOH443 4.2 44.9 1.0
C A:GLY122 4.3 25.8 1.0
CB A:LEU121 4.3 30.8 1.0
CA A:LEU121 4.4 32.6 1.0
CD A:ARG120 4.8 67.8 1.0
C A:ARG120 4.8 46.6 1.0
C A:ILE123 4.8 23.6 1.0
CA A:ILE123 4.9 24.1 1.0
CA A:ARG120 5.0 48.0 1.0

Chlorine binding site 2 out of 3 in 4wyt

Go back to Chlorine Binding Sites List in 4wyt
Chlorine binding site 2 out of 3 in the Crystal Structure of Scribble PDZ34 Tandem at 2.6 Angstroms


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Scribble PDZ34 Tandem at 2.6 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:48.0
occ:1.00
N A:ALA20 2.8 38.5 1.0
O A:PRO18 3.1 44.8 1.0
N A:GLY22 3.3 57.3 1.0
NH1 A:ARG19 3.5 35.1 1.0
CA A:ALA20 3.6 42.3 1.0
N A:GLY21 3.7 54.1 1.0
O A:GLY22 3.7 60.3 1.0
CB A:ALA20 3.8 43.2 1.0
C A:ARG19 3.8 38.4 1.0
C A:ALA20 3.8 60.8 1.0
CA A:GLY22 3.8 48.3 1.0
CD2 A:LEU56 3.8 42.8 1.0
CA A:ARG19 3.8 35.0 1.0
C A:PRO18 4.0 38.6 1.0
C A:GLY22 4.1 55.8 1.0
CD1 A:LEU56 4.3 46.8 1.0
N A:ARG19 4.3 33.0 1.0
C A:GLY21 4.3 67.3 1.0
O A:ALA20 4.6 63.9 1.0
CA A:GLY21 4.6 59.3 1.0
CG A:LEU56 4.7 50.7 1.0
CZ A:ARG19 4.7 37.9 1.0
O A:ARG19 4.9 39.1 1.0

Chlorine binding site 3 out of 3 in 4wyt

Go back to Chlorine Binding Sites List in 4wyt
Chlorine binding site 3 out of 3 in the Crystal Structure of Scribble PDZ34 Tandem at 2.6 Angstroms


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Scribble PDZ34 Tandem at 2.6 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:42.8
occ:1.00
N A:GLY21 3.2 54.1 1.0
CB A:ARG19 3.4 34.0 1.0
C A:ARG19 3.6 38.4 1.0
CA A:GLY21 3.6 59.3 1.0
O A:ARG19 3.8 39.1 1.0
CZ A:ARG19 3.8 37.9 1.0
CA A:ARG19 3.8 35.0 1.0
NH2 A:ARG19 3.8 43.2 1.0
N A:ALA20 3.9 38.5 1.0
NH1 A:ARG19 4.1 35.1 1.0
NE A:ARG19 4.1 36.3 1.0
C A:ALA20 4.2 60.8 1.0
C A:GLY21 4.3 67.3 1.0
CA A:ALA20 4.5 42.3 1.0
CG A:ARG19 4.5 31.1 1.0
CD A:ARG19 4.8 31.0 1.0
O A:GLY22 4.8 60.3 1.0
O A:GLY21 4.8 70.5 1.0
N A:GLY22 4.8 57.3 1.0

Reference:

J.Ren, L.Feng, Y.Bai, H.Pei, Z.Yuan, W.Feng. Interdomain Interface-Mediated Target Recognition By the Scribble PDZ34 Supramodule. Biochem.J. V. 468 133 2015.
ISSN: ESSN 1470-8728
PubMed: 25734361
DOI: 10.1042/BJ20141473
Page generated: Sat Dec 12 11:19:19 2020

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