Chlorine in PDB 4x1w: Crystal Structure of Unbound Rhdvb P Domain

The structure of Crystal Structure of Unbound Rhdvb P Domain, PDB code: 4x1w was solved by M.M.Leuthold, G.S.Hansman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.80 / 1.95
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	59.190, 83.130, 118.290, 90.00, 93.21, 90.00
R / Rfree (%)	18 / 21.2

The binding sites of Chlorine atom in the Crystal Structure of Unbound Rhdvb P Domain (pdb code 4x1w). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Unbound Rhdvb P Domain, PDB code: 4x1w:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Crystal Structure of Unbound Rhdvb P Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Unbound Rhdvb P Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl603 b:29.3 occ:1.00 N A:ASP334 3.1 18.9 1.0 O A:HOH759 3.1 19.8 1.0 O A:HOH826 3.3 28.6 1.0 O A:HOH943 3.4 33.7 1.0 CB A:ASP334 3.6 23.2 1.0 CB A:ASN326 3.7 28.0 1.0 CA A:PRO333 3.8 19.8 1.0 CA A:ASP334 3.9 20.9 1.0 C A:PRO333 4.0 18.3 1.0 CG A:ASN326 4.0 25.9 1.0 CA A:ASN326 4.1 30.4 1.0 ND2 A:ASN326 4.1 19.6 1.0 O A:ASP296 4.2 22.3 1.0 CB A:PRO333 4.2 20.3 1.0 O A:HOH859 4.3 30.8 1.0 N A:ASN326 4.4 32.3 1.0 OD1 A:ASN326 4.6 21.9 1.0 C A:ASP325 4.7 35.1 1.0 O A:ASP325 4.7 35.5 1.0 O A:HOH832 4.8 33.6 1.0 O A:ASP334 4.9 19.3 1.0 C A:ASP334 5.0 21.4 1.0 CG A:ASP334 5.0 25.8 1.0

Chlorine binding site 2 out of 3 in the Crystal Structure of Unbound Rhdvb P Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Unbound Rhdvb P Domain within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl603 b:23.9 occ:1.00 O D:HOH761 3.1 33.8 1.0 ND2 D:ASN281 3.3 22.5 1.0 ND2 D:ASN279 3.3 19.1 1.0 OG D:SER283 3.8 26.2 1.0 CB D:ASN281 3.8 22.3 1.0 CB D:SER283 4.0 24.1 1.0 CG D:ASN281 4.0 23.4 1.0 CG D:ASN279 4.2 19.6 1.0 OD1 D:ASN279 4.3 20.5 1.0 O D:ASN281 4.8 24.2 1.0 O D:HOH822 4.8 26.0 1.0 O D:HOH721 4.9 19.0 1.0

Chlorine binding site 3 out of 3 in the Crystal Structure of Unbound Rhdvb P Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Unbound Rhdvb P Domain within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl604 b:23.8 occ:1.00 O D:HOH897 2.8 31.0 1.0 O D:HOH865 3.1 25.5 1.0 N D:ASP334 3.1 19.2 1.0 O D:HOH809 3.2 16.6 1.0 CB D:ASN326 3.6 24.0 1.0 CB D:ASP334 3.6 21.4 1.0 CA D:PRO333 3.8 18.9 1.0 CG D:ASN326 3.8 23.6 1.0 CA D:ASN326 3.9 26.4 1.0 C D:PRO333 4.0 19.0 1.0 CA D:ASP334 4.0 19.7 1.0 ND2 D:ASN326 4.1 21.8 1.0 CB D:PRO333 4.2 18.1 1.0 O D:ASP296 4.2 23.1 1.0 O C:HOH884 4.3 33.2 1.0 N D:ASN326 4.3 26.5 1.0 OD1 D:ASN326 4.4 26.0 1.0 C D:ASP325 4.6 30.4 1.0 O D:ASP325 4.7 31.2 1.0 O D:HOH846 4.7 43.5 1.0 O D:ASP334 4.8 18.3 1.0 C D:ASP334 4.9 18.4 1.0

M.M.Leuthold, K.P.Dalton, G.S.Hansman. Structural Analysis of A Rabbit Hemorrhagic Disease Virus Binding to Histo-Blood Group Antigens. J.Virol. V. 89 2378 2015.
ISSN: ESSN 1098-5514
PubMed: 25505081
DOI: 10.1128/JVI.02832-14